Wall clock time and date at job start Mon Mar 30 2020 04:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50707 * 109.47065 * 2 1 4 4 N 1.30521 * 126.34316 * 89.97318 * 3 2 1 5 5 N 1.28598 * 109.67226 * 180.02562 * 4 3 2 6 6 C 1.30525 * 109.67137 * 359.97438 * 5 4 3 7 7 C 1.50703 * 126.34566 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.47220 * 251.24779 * 7 6 5 9 9 C 1.46895 * 110.99613 * 201.86025 * 8 7 6 10 10 C 1.50707 * 109.46937 * 164.35960 * 9 8 7 11 11 H 1.07999 * 119.99716 * 4.69170 * 10 9 8 12 12 C 1.37877 * 119.99774 * 184.69911 * 10 9 8 13 13 N 1.31515 * 120.00237 * 359.97438 * 12 10 9 14 14 Si 1.86808 * 119.99769 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46941 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.46740 * 119.99608 * 14 12 10 17 17 H 1.48494 * 109.47075 * 239.99890 * 14 12 10 18 18 C 1.46892 * 110.99826 * 77.90701 * 8 7 6 19 19 C 1.53008 * 109.47208 * 286.74696 * 18 8 7 20 20 C 1.52999 * 109.47713 * 46.75083 * 18 8 7 21 21 N 1.35488 * 126.34487 * 270.01731 * 3 2 1 22 22 C 1.46498 * 126.98220 * 359.94408 * 21 3 2 23 23 H 1.09003 * 109.46644 * 59.99803 * 1 2 3 24 24 H 1.09001 * 109.47018 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47185 * 299.99939 * 1 2 3 26 26 H 1.08998 * 109.47219 * 240.00499 * 2 1 3 27 27 H 1.09000 * 109.47376 * 120.00221 * 2 1 3 28 28 H 1.08999 * 109.47113 * 11.25111 * 7 6 5 29 29 H 1.08997 * 109.46499 * 131.24738 * 7 6 5 30 30 H 1.09002 * 109.47495 * 284.35722 * 9 8 7 31 31 H 1.09002 * 109.47788 * 44.36073 * 9 8 7 32 32 H 0.96998 * 119.99530 * 180.02562 * 13 12 10 33 33 H 1.09003 * 109.47466 * 166.75404 * 18 8 7 34 34 H 1.09000 * 109.46501 * 70.10157 * 19 18 8 35 35 H 1.09002 * 109.47212 * 190.09849 * 19 18 8 36 36 H 1.08996 * 109.47076 * 310.09950 * 19 18 8 37 37 H 1.09004 * 109.46978 * 51.80848 * 20 18 8 38 38 H 1.08993 * 109.47319 * 171.81343 * 20 18 8 39 39 H 1.09006 * 109.46677 * 291.81629 * 20 18 8 40 40 H 1.08996 * 109.46989 * 90.03013 * 22 21 3 41 41 H 1.09002 * 109.46861 * 210.02038 * 22 21 3 42 42 H 1.08996 * 109.46992 * 330.02040 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2897 2.1503 1.0513 5 7 2.7000 3.3119 0.6824 6 6 2.7235 3.3761 -0.6211 7 6 3.1425 4.5632 -1.4494 8 7 1.9607 5.1541 -2.0914 9 6 2.3414 5.9429 -3.2707 10 6 1.1202 6.2086 -4.1129 11 1 0.1465 5.8955 -3.7660 12 6 1.2461 6.8513 -5.3262 13 7 2.4318 7.2328 -5.7483 14 14 -0.2676 7.1800 -6.3705 15 1 -1.4711 6.6553 -5.6766 16 1 -0.4153 8.6425 -6.5812 17 1 -0.1194 6.5031 -7.6838 18 6 1.1956 5.9684 -1.1379 19 6 0.4602 5.0510 -0.1587 20 6 2.1504 6.8796 -0.3640 21 7 2.2997 2.1780 -1.0913 22 6 2.1603 1.7815 -2.4947 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.6163 5.3055 -0.8070 29 1 3.8488 4.2411 -2.2146 30 1 2.7746 6.8903 -2.9498 31 1 3.0739 5.3887 -3.8576 32 1 2.5202 7.6853 -6.6018 33 1 0.4712 6.5771 -1.6791 34 1 1.1820 4.5753 0.5052 35 1 -0.2436 5.6384 0.4309 36 1 -0.0815 4.2858 -0.7147 37 1 2.7775 7.4290 -1.0663 38 1 1.5742 7.5836 0.2363 39 1 2.7799 6.2752 0.2891 40 1 1.1567 2.0255 -2.8432 41 1 2.8941 2.3161 -3.0979 42 1 2.3263 0.7083 -2.5872 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686606276.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:52 Heat of formation + Delta-G solvation = 81.086042 kcal Electronic energy + Delta-G solvation = -21495.574888 eV Core-core repulsion = 18512.398776 eV Total energy + Delta-G solvation = -2983.176112 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.87527 -37.84791 -35.00439 -33.87620 -32.88930 -31.10451 -30.02914 -27.56480 -27.08982 -26.59417 -24.90977 -23.90522 -22.12501 -20.93947 -20.38193 -18.87977 -16.76092 -16.23184 -16.05656 -15.47160 -14.85091 -14.60498 -14.42414 -14.11414 -13.76487 -13.28897 -13.05424 -12.89261 -12.76983 -12.40894 -12.20019 -11.94302 -11.76740 -11.46893 -11.33461 -11.23792 -11.08626 -10.99321 -10.76947 -10.64165 -10.53261 -10.15469 -10.00188 -9.79539 -9.73220 -9.34128 -8.55844 -8.47561 -7.39132 -6.10833 -4.11916 2.10581 2.79731 3.13751 3.24975 3.33348 3.37765 4.33787 4.38971 4.65477 4.78188 4.86579 5.00391 5.10382 5.25176 5.29328 5.36659 5.43779 5.62837 5.64560 5.67736 5.68035 5.82681 5.91903 6.01220 6.05647 6.10958 6.18628 6.27882 6.39170 6.44497 6.52348 6.59265 6.83802 6.90938 7.15229 7.18544 7.29782 7.71618 7.97095 8.10583 8.41736 8.95622 9.08249 9.52512 10.99670 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.021944 B = 0.005663 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.686871 B = 4942.983158 C = 5433.334566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.031 4.031 3 C 0.157 3.843 4 N -0.299 5.299 5 N -0.304 5.304 6 C 0.213 3.787 7 C 0.120 3.880 8 N -0.527 5.527 9 C 0.192 3.808 10 C -0.503 4.503 11 H 0.063 0.937 12 C 0.057 3.943 13 N -0.898 5.898 14 Si 0.896 3.104 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.284 1.284 18 C 0.085 3.915 19 C -0.157 4.157 20 C -0.183 4.183 21 N -0.457 5.457 22 C 0.080 3.920 23 H 0.055 0.945 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.084 0.916 30 H -0.003 1.003 31 H 0.031 0.969 32 H 0.261 0.739 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.042 0.958 36 H 0.045 0.955 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.754 -11.960 7.059 13.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.071 4.071 3 C -0.111 4.111 4 N -0.140 5.140 5 N -0.145 5.145 6 C -0.055 4.055 7 C -0.011 4.011 8 N -0.252 5.252 9 C 0.068 3.932 10 C -0.542 4.542 11 H 0.081 0.919 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.724 3.276 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.024 4.024 19 C -0.215 4.215 20 C -0.241 4.241 21 N -0.146 5.146 22 C -0.063 4.063 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.112 0.888 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.015 0.985 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.816 -11.847 8.145 14.400 hybrid contribution -0.427 0.586 -1.912 2.045 sum -1.244 -11.261 6.233 12.931 Atomic orbital electron populations 1.21736 0.93794 1.02117 1.02875 1.19892 0.96501 0.86821 1.03859 1.24600 1.05328 0.97816 0.83329 1.74133 1.16601 0.99115 1.24117 1.74122 1.19465 1.12536 1.08351 1.24876 1.00240 0.88390 0.91990 1.20586 0.94017 0.90536 0.95970 1.62313 1.18914 1.36544 1.07383 1.19810 0.96915 0.91089 0.85408 1.21135 0.93728 1.36596 1.02750 0.91927 1.24958 0.95994 0.95818 0.97692 1.69956 1.22252 1.40432 1.21105 0.86475 0.83102 0.77893 0.80160 1.19729 1.21071 1.21054 1.21566 0.95723 0.92997 0.92065 1.22206 1.00592 0.99648 0.99048 1.22431 1.00785 1.00176 1.00717 1.45842 1.48164 1.11882 1.08704 1.22044 1.05366 1.01038 0.77856 0.92538 0.91653 0.91855 0.90410 0.88795 0.90559 0.89750 0.98505 0.95045 0.92932 0.89352 0.90593 0.93843 0.93564 0.92325 0.92980 0.92269 0.89325 0.88766 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.89 37.16 0.37 -1.00 16 2 C -0.03 -0.31 6.29 -27.88 -0.18 -0.48 16 3 C 0.16 2.29 7.28 -154.99 -1.13 1.16 16 4 N -0.30 -5.32 12.21 32.80 0.40 -4.91 16 5 N -0.30 -5.68 10.05 32.80 0.33 -5.35 16 6 C 0.21 3.67 5.59 -154.97 -0.87 2.81 16 7 C 0.12 2.11 4.86 -4.97 -0.02 2.09 16 8 N -0.53 -10.53 4.35 -229.52 -1.00 -11.53 16 9 C 0.19 4.59 4.64 -4.98 -0.02 4.57 16 10 C -0.50 -13.28 8.44 -34.44 -0.29 -13.57 16 11 H 0.06 1.67 7.49 -52.49 -0.39 1.28 16 12 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 13 N -0.90 -25.43 13.29 55.43 0.74 -24.70 16 14 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 15 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 C 0.09 1.65 2.76 -67.71 -0.19 1.46 16 19 C -0.16 -2.87 8.38 37.16 0.31 -2.56 16 20 C -0.18 -3.23 8.10 37.16 0.30 -2.93 16 21 N -0.46 -6.81 3.15 -118.00 -0.37 -7.18 16 22 C 0.08 0.95 10.86 59.85 0.65 1.60 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 0.61 7.21 -51.93 -0.37 0.23 16 27 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.08 1.34 5.32 -51.93 -0.28 1.07 16 29 H 0.08 1.41 7.36 -51.93 -0.38 1.03 16 30 H 0.00 -0.07 6.61 -51.93 -0.34 -0.42 16 31 H 0.03 0.79 7.67 -51.93 -0.40 0.39 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.09 1.90 6.94 -51.93 -0.36 1.54 16 34 H 0.08 1.44 4.42 -51.93 -0.23 1.21 16 35 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 1.09 6.69 -51.93 -0.35 0.75 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 1.02 6.41 -51.93 -0.33 0.69 16 40 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.09 1.16 7.68 -51.93 -0.40 0.76 16 42 H 0.08 0.68 7.20 -51.93 -0.37 0.31 16 LS Contribution 330.92 15.07 4.99 4.99 Total: -1.00 -30.47 330.92 -7.83 -38.30 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.73 Total: -0.05 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -1.16 Total: -5.43 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 0.10 Total: -53.67 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.47 -7.83 -38.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686606276.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.387 kcal (2) G-P(sol) polarization free energy of solvation -30.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds