Wall clock time and date at job start Mon Mar 30 2020 04:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50707 * 109.47065 * 2 1 4 4 N 1.30521 * 126.34316 * 89.97318 * 3 2 1 5 5 N 1.28598 * 109.67226 * 180.02562 * 4 3 2 6 6 C 1.30525 * 109.67137 * 359.97438 * 5 4 3 7 7 C 1.50703 * 126.34566 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.47220 * 251.24779 * 7 6 5 9 9 C 1.46895 * 110.99613 * 201.86025 * 8 7 6 10 10 C 1.50707 * 109.46937 * 164.35960 * 9 8 7 11 11 H 1.07999 * 119.99716 * 4.69170 * 10 9 8 12 12 C 1.37877 * 119.99774 * 184.69911 * 10 9 8 13 13 N 1.31515 * 120.00237 * 359.97438 * 12 10 9 14 14 Si 1.86808 * 119.99769 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46941 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.46740 * 119.99608 * 14 12 10 17 17 H 1.48494 * 109.47075 * 239.99890 * 14 12 10 18 18 C 1.46892 * 110.99826 * 77.90701 * 8 7 6 19 19 C 1.53008 * 109.47208 * 286.74696 * 18 8 7 20 20 C 1.52999 * 109.47713 * 46.75083 * 18 8 7 21 21 N 1.35488 * 126.34487 * 270.01731 * 3 2 1 22 22 C 1.46498 * 126.98220 * 359.94408 * 21 3 2 23 23 H 1.09003 * 109.46644 * 59.99803 * 1 2 3 24 24 H 1.09001 * 109.47018 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47185 * 299.99939 * 1 2 3 26 26 H 1.08998 * 109.47219 * 240.00499 * 2 1 3 27 27 H 1.09000 * 109.47376 * 120.00221 * 2 1 3 28 28 H 1.08999 * 109.47113 * 11.25111 * 7 6 5 29 29 H 1.08997 * 109.46499 * 131.24738 * 7 6 5 30 30 H 1.09002 * 109.47495 * 284.35722 * 9 8 7 31 31 H 1.09002 * 109.47788 * 44.36073 * 9 8 7 32 32 H 0.96998 * 119.99530 * 180.02562 * 13 12 10 33 33 H 1.09003 * 109.47466 * 166.75404 * 18 8 7 34 34 H 1.09000 * 109.46501 * 70.10157 * 19 18 8 35 35 H 1.09002 * 109.47212 * 190.09849 * 19 18 8 36 36 H 1.08996 * 109.47076 * 310.09950 * 19 18 8 37 37 H 1.09004 * 109.46978 * 51.80848 * 20 18 8 38 38 H 1.08993 * 109.47319 * 171.81343 * 20 18 8 39 39 H 1.09006 * 109.46677 * 291.81629 * 20 18 8 40 40 H 1.08996 * 109.46989 * 90.03013 * 22 21 3 41 41 H 1.09002 * 109.46861 * 210.02038 * 22 21 3 42 42 H 1.08996 * 109.46992 * 330.02040 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2897 2.1503 1.0513 5 7 2.7000 3.3119 0.6824 6 6 2.7235 3.3761 -0.6211 7 6 3.1425 4.5632 -1.4494 8 7 1.9607 5.1541 -2.0914 9 6 2.3414 5.9429 -3.2707 10 6 1.1202 6.2086 -4.1129 11 1 0.1465 5.8955 -3.7660 12 6 1.2461 6.8513 -5.3262 13 7 2.4318 7.2328 -5.7483 14 14 -0.2676 7.1800 -6.3705 15 1 -1.4711 6.6553 -5.6766 16 1 -0.4153 8.6425 -6.5812 17 1 -0.1194 6.5031 -7.6838 18 6 1.1956 5.9684 -1.1379 19 6 0.4602 5.0510 -0.1587 20 6 2.1504 6.8796 -0.3640 21 7 2.2997 2.1780 -1.0913 22 6 2.1603 1.7815 -2.4947 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.6163 5.3055 -0.8070 29 1 3.8488 4.2411 -2.2146 30 1 2.7746 6.8903 -2.9498 31 1 3.0739 5.3887 -3.8576 32 1 2.5202 7.6853 -6.6018 33 1 0.4712 6.5771 -1.6791 34 1 1.1820 4.5753 0.5052 35 1 -0.2436 5.6384 0.4309 36 1 -0.0815 4.2858 -0.7147 37 1 2.7775 7.4290 -1.0663 38 1 1.5742 7.5836 0.2363 39 1 2.7799 6.2752 0.2891 40 1 1.1567 2.0255 -2.8432 41 1 2.8941 2.3161 -3.0979 42 1 2.3263 0.7083 -2.5872 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686606276.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:51 Heat of formation + Delta-G solvation = 62.884365 kcal Electronic energy + Delta-G solvation = -21496.364171 eV Core-core repulsion = 18512.398776 eV Total energy + Delta-G solvation = -2983.965396 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.11629 -39.45613 -36.12847 -35.04848 -34.72568 -32.64987 -31.44404 -29.03861 -28.33990 -28.09779 -26.49211 -24.90215 -23.98450 -22.27387 -21.47773 -20.41736 -18.40750 -17.83981 -17.32034 -16.93681 -16.49488 -15.91541 -15.76361 -15.50227 -14.90559 -14.69239 -14.43814 -14.22050 -14.07113 -13.77046 -13.42636 -13.30725 -13.20233 -12.78222 -12.75074 -12.64219 -12.57017 -12.42979 -12.33630 -12.12774 -12.05358 -11.74500 -11.60556 -11.35919 -11.15025 -10.95632 -10.59142 -9.82197 -9.07706 -8.18094 -6.26066 0.89120 1.40708 1.43159 1.54640 1.67728 1.85225 2.41449 3.09061 3.17439 3.44730 3.59895 3.89189 3.94030 4.08141 4.13158 4.29616 4.32032 4.38326 4.47191 4.49361 4.61803 4.64014 4.72616 4.75034 4.82281 4.96839 4.99671 5.01067 5.05930 5.16574 5.19184 5.23442 5.24899 5.35255 5.45060 5.47739 5.68242 6.01942 6.06566 6.33229 6.55003 6.88339 7.42709 7.81496 8.92288 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.021944 B = 0.005663 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.686871 B = 4942.983158 C = 5433.334566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.031 4.031 3 C 0.172 3.828 4 N -0.336 5.336 5 N -0.326 5.326 6 C 0.200 3.800 7 C 0.126 3.874 8 N -0.524 5.524 9 C 0.210 3.790 10 C -0.513 4.513 11 H 0.056 0.944 12 C 0.009 3.991 13 N -0.931 5.931 14 Si 0.960 3.040 15 H -0.268 1.268 16 H -0.283 1.283 17 H -0.278 1.278 18 C 0.085 3.915 19 C -0.142 4.142 20 C -0.172 4.172 21 N -0.457 5.457 22 C 0.076 3.924 23 H 0.047 0.953 24 H 0.094 0.906 25 H 0.044 0.956 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.090 0.910 30 H -0.026 1.026 31 H 0.016 0.984 32 H 0.263 0.737 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.034 0.966 37 H 0.043 0.957 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.718 -13.719 6.962 15.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.071 4.071 3 C -0.096 4.096 4 N -0.176 5.176 5 N -0.167 5.167 6 C -0.069 4.069 7 C -0.005 4.005 8 N -0.249 5.249 9 C 0.084 3.916 10 C -0.551 4.551 11 H 0.074 0.926 12 C -0.190 4.190 13 N -0.571 5.571 14 Si 0.786 3.214 15 H -0.192 1.192 16 H -0.209 1.209 17 H -0.204 1.204 18 C -0.024 4.024 19 C -0.200 4.200 20 C -0.231 4.231 21 N -0.146 5.146 22 C -0.066 4.066 23 H 0.066 0.934 24 H 0.113 0.887 25 H 0.063 0.937 26 H 0.127 0.873 27 H 0.124 0.876 28 H 0.093 0.907 29 H 0.108 0.892 30 H -0.008 1.008 31 H 0.034 0.966 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.785 -13.619 8.060 15.926 hybrid contribution -0.126 1.064 -1.841 2.130 sum -1.912 -12.555 6.219 14.141 Atomic orbital electron populations 1.21705 0.93166 1.03647 1.01519 1.20194 0.96824 0.84055 1.05980 1.25464 1.02753 0.99012 0.82363 1.74073 1.18501 0.99401 1.25669 1.74028 1.20119 1.13492 1.09063 1.24575 1.01466 0.89071 0.91742 1.20487 0.93131 0.90833 0.96035 1.62199 1.19936 1.35770 1.06993 1.19444 0.95536 0.90172 0.86447 1.21369 0.94123 1.36387 1.03227 0.92553 1.25731 0.98692 0.95605 0.98932 1.70060 1.24186 1.41242 1.21654 0.85470 0.79721 0.77665 0.78562 1.19237 1.20862 1.20350 1.21540 0.95603 0.93242 0.92015 1.22060 1.00424 0.99096 0.98452 1.22317 1.00395 1.00045 1.00332 1.46030 1.47491 1.11151 1.09928 1.22260 1.04707 1.03562 0.76070 0.93391 0.88682 0.93701 0.87340 0.87597 0.90676 0.89166 1.00832 0.96633 0.92763 0.91676 0.90852 0.92395 0.94719 0.93757 0.91301 0.91752 0.90016 0.89506 0.86034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.89 71.98 0.71 -1.54 16 2 C -0.03 -0.52 6.29 29.85 0.19 -0.33 16 3 C 0.17 4.72 7.28 137.98 1.01 5.73 16 4 N -0.34 -11.69 12.21 -50.15 -0.61 -12.30 16 5 N -0.33 -12.10 10.05 -50.15 -0.50 -12.61 16 6 C 0.20 6.84 5.59 137.98 0.77 7.61 16 7 C 0.13 4.47 4.86 85.56 0.42 4.88 16 8 N -0.52 -21.26 4.35 -880.06 -3.83 -25.09 16 9 C 0.21 10.28 4.64 85.56 0.40 10.67 16 10 C -0.51 -27.38 8.44 25.60 0.22 -27.16 16 11 H 0.06 3.03 7.49 -2.91 -0.02 3.01 16 12 C 0.01 0.47 5.46 84.65 0.46 0.93 16 13 N -0.93 -53.27 13.29 21.45 0.28 -52.98 16 14 Si 0.96 42.76 29.54 68.60 2.03 44.79 16 15 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 16 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 17 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 18 C 0.08 3.30 2.76 44.92 0.12 3.43 16 19 C -0.14 -5.15 8.38 71.98 0.60 -4.55 16 20 C -0.17 -6.10 8.10 71.98 0.58 -5.52 16 21 N -0.46 -13.03 3.15 -527.24 -1.66 -14.69 16 22 C 0.08 1.66 10.86 127.77 1.39 3.05 16 23 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 24 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.11 1.18 7.21 -2.39 -0.02 1.17 16 27 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.08 2.69 5.32 -2.39 -0.01 2.67 16 29 H 0.09 3.06 7.36 -2.39 -0.02 3.04 16 30 H -0.03 -1.38 6.61 -2.39 -0.02 -1.40 16 31 H 0.02 0.81 7.67 -2.39 -0.02 0.79 16 32 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 33 H 0.06 2.84 6.94 -2.39 -0.02 2.83 16 34 H 0.07 2.75 4.42 -2.39 -0.01 2.74 16 35 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.04 1.68 6.69 -2.39 -0.02 1.66 16 38 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.06 2.21 6.41 -2.38 -0.02 2.19 16 40 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.09 2.05 7.68 -2.39 -0.02 2.03 16 42 H 0.12 1.61 7.20 -2.39 -0.02 1.60 16 Total: -1.00 -66.02 330.92 3.57 -62.44 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 1.00 Total: 13.25 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 6.87 Total: -2.81 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -6.32 Total: -117.67 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -66.02 3.57 -62.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686606276.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.328 kcal (2) G-P(sol) polarization free energy of solvation -66.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds