Wall clock time and date at job start Mon Mar 30 2020 04:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33240 * 125.52842 * 2 1 4 4 C 1.30831 * 109.83360 * 180.13214 * 3 2 1 5 5 C 1.50699 * 125.96556 * 179.87032 * 4 3 2 6 6 N 1.46900 * 109.47076 * 269.69041 * 5 4 3 7 7 C 1.46894 * 111.00112 * 190.00111 * 6 5 4 8 8 C 1.50700 * 109.47401 * 155.64850 * 7 6 5 9 9 H 1.08009 * 119.99708 * 2.97253 * 8 7 6 10 10 C 1.37874 * 120.00249 * 182.96666 * 8 7 6 11 11 N 1.31515 * 120.00257 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 120.00145 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47042 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46835 * 120.00070 * 12 10 8 15 15 H 1.48502 * 109.47028 * 240.00262 * 12 10 8 16 16 C 1.46894 * 111.00298 * 66.04184 * 6 5 4 17 17 C 1.52996 * 109.47334 * 197.44216 * 16 6 5 18 18 C 1.52997 * 109.47091 * 60.96206 * 17 16 6 19 19 C 1.53005 * 109.47132 * 180.95592 * 17 16 6 20 20 N 1.34434 * 108.07438 * 359.60343 * 4 3 2 21 21 C 1.46498 * 126.82473 * 180.27953 * 20 4 3 22 22 N 1.30715 * 125.52630 * 179.68629 * 2 1 3 23 23 H 1.09003 * 109.46800 * 270.29671 * 1 2 3 24 24 H 1.09005 * 109.46828 * 30.28842 * 1 2 3 25 25 H 1.08997 * 109.46885 * 150.28985 * 1 2 3 26 26 H 1.09000 * 109.46870 * 29.69000 * 5 4 3 27 27 H 1.08999 * 109.47275 * 149.69158 * 5 4 3 28 28 H 1.08992 * 109.47207 * 275.65135 * 7 6 5 29 29 H 1.09002 * 109.47259 * 35.64754 * 7 6 5 30 30 H 0.97000 * 120.00492 * 179.97438 * 11 10 8 31 31 H 1.09005 * 109.47240 * 317.44444 * 16 6 5 32 32 H 1.09002 * 109.46895 * 77.43913 * 16 6 5 33 33 H 1.08995 * 109.47233 * 300.95490 * 17 16 6 34 34 H 1.09002 * 109.46963 * 180.02562 * 18 17 16 35 35 H 1.09005 * 109.46714 * 299.99459 * 18 17 16 36 36 H 1.08995 * 109.47667 * 59.99550 * 18 17 16 37 37 H 1.09000 * 109.46924 * 59.99899 * 19 17 16 38 38 H 1.08999 * 109.47302 * 180.02562 * 19 17 16 39 39 H 1.08997 * 109.47486 * 300.00158 * 19 17 16 40 40 H 1.08992 * 109.47234 * 90.00151 * 21 20 4 41 41 H 1.09003 * 109.46958 * 209.99872 * 21 20 4 42 42 H 1.08998 * 109.46836 * 329.99806 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2813 1.0843 0.0000 4 6 3.5408 0.7304 -0.0028 5 6 4.7228 1.6652 -0.0066 6 7 5.1081 1.9620 -1.3927 7 6 6.3922 2.6736 -1.4414 8 6 7.0433 2.4442 -2.7810 9 1 6.5307 1.8708 -3.5394 10 6 8.2931 2.9661 -3.0385 11 7 8.9174 3.6639 -2.1149 12 14 9.0999 2.6823 -4.6993 13 1 8.1970 1.8727 -5.5563 14 1 9.3609 3.9900 -5.3527 15 1 10.3829 1.9590 -4.5092 16 6 4.0571 2.7246 -2.0795 17 6 4.2736 2.6434 -3.5919 18 6 4.1924 1.1831 -4.0410 19 6 3.1928 3.4574 -4.3063 20 7 3.5966 -0.6127 0.0041 21 6 4.8048 -1.4413 0.0097 22 7 2.2666 -1.0638 0.0058 23 1 -0.3633 0.0053 1.0277 24 1 -0.3633 0.8874 -0.5183 25 1 -0.3633 -0.8926 -0.5093 26 1 4.4552 2.5913 0.5023 27 1 5.5594 1.1952 0.5104 28 1 6.2219 3.7406 -1.2982 29 1 7.0445 2.3007 -0.6518 30 1 9.7969 4.0308 -2.2959 31 1 3.0821 2.3065 -1.8291 32 1 4.0979 3.7666 -1.7620 33 1 5.2555 3.0460 -3.8405 34 1 4.3471 1.1252 -5.1185 35 1 4.9624 0.6032 -3.5321 36 1 3.2105 0.7805 -3.7924 37 1 3.2506 4.4978 -3.9863 38 1 3.3468 3.3992 -5.3838 39 1 2.2109 3.0548 -4.0577 40 1 5.1032 -1.6416 1.0387 41 1 4.6016 -2.3834 -0.4995 42 1 5.6083 -0.9155 -0.5060 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686621497.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:03 Heat of formation + Delta-G solvation = 83.626128 kcal Electronic energy + Delta-G solvation = -21356.412968 eV Core-core repulsion = 18373.347002 eV Total energy + Delta-G solvation = -2983.065965 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.84831 -37.56373 -34.41271 -33.69555 -32.75711 -31.43029 -29.42352 -27.87806 -26.70394 -26.44234 -25.52688 -23.84845 -21.24036 -20.47359 -19.98653 -18.96735 -16.66946 -16.18118 -16.04282 -15.04804 -14.69392 -14.36820 -14.01752 -13.68865 -13.61974 -13.53104 -12.98344 -12.68893 -12.56381 -12.29243 -12.23615 -12.19282 -11.72649 -11.63217 -11.38361 -11.27642 -11.08390 -10.73851 -10.56684 -10.20970 -10.15955 -9.96289 -9.72053 -9.47920 -9.39283 -9.10683 -9.06298 -8.43126 -7.41515 -6.06997 -4.06027 1.86166 2.58625 3.12039 3.27620 3.36364 3.40521 4.24659 4.39968 4.65171 4.93474 4.98746 5.26772 5.28194 5.31507 5.53724 5.57117 5.62750 5.67469 5.73034 5.80132 5.88841 5.97598 6.06234 6.16431 6.30196 6.41482 6.46155 6.56081 6.56405 6.69586 6.73085 6.81770 7.06119 7.07286 7.16032 7.24015 7.39912 7.79504 8.00344 8.10265 8.41590 8.43813 9.01090 9.56593 11.03458 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.022176 B = 0.005885 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.312124 B = 4756.748503 C = 5274.951733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.214 3.786 3 N -0.545 5.545 4 C 0.308 3.692 5 C 0.125 3.875 6 N -0.529 5.529 7 C 0.193 3.807 8 C -0.503 4.503 9 H 0.079 0.921 10 C 0.055 3.945 11 N -0.898 5.898 12 Si 0.891 3.109 13 H -0.271 1.271 14 H -0.285 1.285 15 H -0.285 1.285 16 C 0.070 3.930 17 C -0.105 4.105 18 C -0.126 4.126 19 C -0.143 4.143 20 N -0.370 5.370 21 C 0.096 3.904 22 N -0.332 5.332 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.091 0.909 28 H -0.002 1.002 29 H 0.029 0.971 30 H 0.260 0.740 31 H 0.066 0.934 32 H 0.025 0.975 33 H 0.111 0.889 34 H 0.035 0.965 35 H 0.070 0.930 36 H 0.029 0.971 37 H 0.048 0.952 38 H 0.047 0.953 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.618 -6.159 3.112 12.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.068 4.068 3 N -0.275 5.275 4 C 0.032 3.968 5 C -0.006 4.006 6 N -0.254 5.254 7 C 0.068 3.932 8 C -0.542 4.542 9 H 0.096 0.904 10 C -0.146 4.146 11 N -0.538 5.538 12 Si 0.719 3.281 13 H -0.195 1.195 14 H -0.212 1.212 15 H -0.211 1.211 16 C -0.058 4.058 17 C -0.123 4.123 18 C -0.183 4.183 19 C -0.201 4.201 20 N -0.160 5.160 21 C -0.046 4.046 22 N -0.162 5.162 23 H 0.097 0.903 24 H 0.102 0.898 25 H 0.096 0.904 26 H 0.080 0.920 27 H 0.110 0.890 28 H 0.016 0.984 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.043 0.957 33 H 0.129 0.871 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.048 0.952 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.687 -6.979 2.917 13.093 hybrid contribution 0.798 0.640 -0.405 1.100 sum -9.889 -6.339 2.512 12.012 Atomic orbital electron populations 1.20010 0.84479 1.03644 1.03181 1.24148 0.97975 0.86121 0.98602 1.70367 1.00025 1.30678 1.26415 1.24402 0.94738 0.83612 0.94088 1.20605 0.90527 0.95186 0.94239 1.62163 1.05013 1.48882 1.09385 1.19846 0.83380 0.91522 0.98406 1.21405 1.00988 1.32678 0.99103 0.90354 1.24984 0.97207 0.95461 0.96930 1.69960 1.14593 1.35815 1.33430 0.86538 0.79404 0.77920 0.84208 1.19540 1.21161 1.21129 1.22095 0.94316 0.95044 0.94392 1.21414 1.01239 0.95758 0.93884 1.21612 1.00518 0.97071 0.99100 1.21816 0.98669 0.99786 0.99788 1.50065 1.05751 1.05829 1.54312 1.21987 0.83308 0.96064 1.03265 1.77897 0.87067 1.22825 1.28446 0.90335 0.89831 0.90445 0.92017 0.89044 0.98448 0.95314 0.93021 0.91582 0.95684 0.87141 0.94619 0.91116 0.95168 0.93334 0.93366 0.93923 0.90786 0.89431 0.87630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.61 10.51 36.01 0.38 -0.23 16 2 C 0.21 3.45 8.14 -156.85 -1.28 2.17 16 3 N -0.55 -9.69 10.06 -8.16 -0.08 -9.77 16 4 C 0.31 5.33 6.65 -155.69 -1.04 4.29 16 5 C 0.13 2.17 5.05 -4.98 -0.03 2.14 16 6 N -0.53 -10.50 3.70 -237.53 -0.88 -11.38 16 7 C 0.19 4.56 4.79 -4.98 -0.02 4.54 16 8 C -0.50 -12.84 7.24 -34.44 -0.25 -13.09 16 9 H 0.08 1.97 4.58 -52.48 -0.24 1.73 16 10 C 0.06 1.47 5.46 -17.82 -0.10 1.38 16 11 N -0.90 -25.27 13.29 55.43 0.74 -24.53 16 12 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 13 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 16 C 0.07 1.36 4.27 -3.83 -0.02 1.34 16 17 C -0.10 -2.00 2.40 -90.62 -0.22 -2.22 16 18 C -0.13 -2.34 8.40 37.16 0.31 -2.02 16 19 C -0.14 -2.33 9.19 37.16 0.34 -1.99 16 20 N -0.37 -5.99 4.04 -65.10 -0.26 -6.25 16 21 C 0.10 1.18 11.16 59.85 0.67 1.85 16 22 N -0.33 -5.61 12.70 32.42 0.41 -5.20 16 23 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.06 1.06 8.12 -51.93 -0.42 0.64 16 27 H 0.09 1.44 7.42 -51.93 -0.39 1.05 16 28 H 0.00 -0.06 7.67 -51.93 -0.40 -0.46 16 29 H 0.03 0.71 7.65 -51.93 -0.40 0.32 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.07 1.29 6.04 -51.93 -0.31 0.97 16 32 H 0.02 0.51 7.74 -51.93 -0.40 0.10 16 33 H 0.11 2.44 5.14 -51.93 -0.27 2.18 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 1.43 6.74 -51.93 -0.35 1.08 16 36 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.11 1.34 7.72 -51.93 -0.40 0.94 16 LS Contribution 336.44 15.07 5.07 5.07 Total: -1.00 -29.89 336.44 -8.21 -38.10 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.94 Total: 0.14 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -1.24 Total: -1.85 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -0.07 Total: -57.15 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.89 -8.21 -38.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686621497.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.722 kcal (2) G-P(sol) polarization free energy of solvation -29.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds