Wall clock time and date at job start Mon Mar 30 2020 04:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33240 * 125.52842 * 2 1 4 4 C 1.30831 * 109.83360 * 180.13214 * 3 2 1 5 5 C 1.50699 * 125.96556 * 179.87032 * 4 3 2 6 6 N 1.46900 * 109.47076 * 269.69041 * 5 4 3 7 7 C 1.46894 * 111.00112 * 190.00111 * 6 5 4 8 8 C 1.50700 * 109.47401 * 155.64850 * 7 6 5 9 9 H 1.08009 * 119.99708 * 2.97253 * 8 7 6 10 10 C 1.37874 * 120.00249 * 182.96666 * 8 7 6 11 11 N 1.31515 * 120.00257 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 120.00145 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47042 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46835 * 120.00070 * 12 10 8 15 15 H 1.48502 * 109.47028 * 240.00262 * 12 10 8 16 16 C 1.46894 * 111.00298 * 66.04184 * 6 5 4 17 17 C 1.52996 * 109.47334 * 197.44216 * 16 6 5 18 18 C 1.52997 * 109.47091 * 60.96206 * 17 16 6 19 19 C 1.53005 * 109.47132 * 180.95592 * 17 16 6 20 20 N 1.34434 * 108.07438 * 359.60343 * 4 3 2 21 21 C 1.46498 * 126.82473 * 180.27953 * 20 4 3 22 22 N 1.30715 * 125.52630 * 179.68629 * 2 1 3 23 23 H 1.09003 * 109.46800 * 270.29671 * 1 2 3 24 24 H 1.09005 * 109.46828 * 30.28842 * 1 2 3 25 25 H 1.08997 * 109.46885 * 150.28985 * 1 2 3 26 26 H 1.09000 * 109.46870 * 29.69000 * 5 4 3 27 27 H 1.08999 * 109.47275 * 149.69158 * 5 4 3 28 28 H 1.08992 * 109.47207 * 275.65135 * 7 6 5 29 29 H 1.09002 * 109.47259 * 35.64754 * 7 6 5 30 30 H 0.97000 * 120.00492 * 179.97438 * 11 10 8 31 31 H 1.09005 * 109.47240 * 317.44444 * 16 6 5 32 32 H 1.09002 * 109.46895 * 77.43913 * 16 6 5 33 33 H 1.08995 * 109.47233 * 300.95490 * 17 16 6 34 34 H 1.09002 * 109.46963 * 180.02562 * 18 17 16 35 35 H 1.09005 * 109.46714 * 299.99459 * 18 17 16 36 36 H 1.08995 * 109.47667 * 59.99550 * 18 17 16 37 37 H 1.09000 * 109.46924 * 59.99899 * 19 17 16 38 38 H 1.08999 * 109.47302 * 180.02562 * 19 17 16 39 39 H 1.08997 * 109.47486 * 300.00158 * 19 17 16 40 40 H 1.08992 * 109.47234 * 90.00151 * 21 20 4 41 41 H 1.09003 * 109.46958 * 209.99872 * 21 20 4 42 42 H 1.08998 * 109.46836 * 329.99806 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2813 1.0843 0.0000 4 6 3.5408 0.7304 -0.0028 5 6 4.7228 1.6652 -0.0066 6 7 5.1081 1.9620 -1.3927 7 6 6.3922 2.6736 -1.4414 8 6 7.0433 2.4442 -2.7810 9 1 6.5307 1.8708 -3.5394 10 6 8.2931 2.9661 -3.0385 11 7 8.9174 3.6639 -2.1149 12 14 9.0999 2.6823 -4.6993 13 1 8.1970 1.8727 -5.5563 14 1 9.3609 3.9900 -5.3527 15 1 10.3829 1.9590 -4.5092 16 6 4.0571 2.7246 -2.0795 17 6 4.2736 2.6434 -3.5919 18 6 4.1924 1.1831 -4.0410 19 6 3.1928 3.4574 -4.3063 20 7 3.5966 -0.6127 0.0041 21 6 4.8048 -1.4413 0.0097 22 7 2.2666 -1.0638 0.0058 23 1 -0.3633 0.0053 1.0277 24 1 -0.3633 0.8874 -0.5183 25 1 -0.3633 -0.8926 -0.5093 26 1 4.4552 2.5913 0.5023 27 1 5.5594 1.1952 0.5104 28 1 6.2219 3.7406 -1.2982 29 1 7.0445 2.3007 -0.6518 30 1 9.7969 4.0308 -2.2959 31 1 3.0821 2.3065 -1.8291 32 1 4.0979 3.7666 -1.7620 33 1 5.2555 3.0460 -3.8405 34 1 4.3471 1.1252 -5.1185 35 1 4.9624 0.6032 -3.5321 36 1 3.2105 0.7805 -3.7924 37 1 3.2506 4.4978 -3.9863 38 1 3.3468 3.3992 -5.3838 39 1 2.2109 3.0548 -4.0577 40 1 5.1032 -1.6416 1.0387 41 1 4.6016 -2.3834 -0.4995 42 1 5.6083 -0.9155 -0.5060 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686621497.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:03 Heat of formation + Delta-G solvation = 66.422401 kcal Electronic energy + Delta-G solvation = -21357.158977 eV Core-core repulsion = 18373.347002 eV Total energy + Delta-G solvation = -2983.811975 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.10583 -39.18105 -35.70475 -35.11411 -34.65330 -32.79716 -30.48213 -29.55855 -28.24377 -27.87383 -26.73976 -25.56197 -22.95819 -21.68621 -21.31665 -20.55014 -18.48404 -17.52157 -17.39793 -16.64239 -16.40591 -15.86943 -15.59253 -15.09915 -14.76878 -14.55404 -14.44745 -14.13931 -13.98006 -13.77048 -13.42508 -13.29593 -13.16719 -13.04230 -12.91987 -12.75745 -12.61001 -12.53031 -12.33187 -11.89526 -11.69921 -11.50998 -11.28926 -11.03696 -10.90345 -10.68794 -10.45122 -10.28206 -9.10481 -8.11036 -6.15065 0.58158 1.42964 1.43365 1.46792 1.57367 1.85743 2.45996 2.99669 3.21393 3.38383 3.55469 3.76375 4.13235 4.20539 4.28367 4.38500 4.42268 4.43634 4.51430 4.69573 4.72922 4.76498 4.82601 4.87274 4.92484 4.95789 5.01652 5.10162 5.16186 5.20907 5.29311 5.36578 5.39851 5.58552 5.59529 5.74640 5.83043 5.87057 6.13059 6.34553 6.56218 6.98612 7.15330 7.51111 8.99691 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.022176 B = 0.005885 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.312124 B = 4756.748503 C = 5274.951733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.205 3.795 3 N -0.565 5.565 4 C 0.297 3.703 5 C 0.129 3.871 6 N -0.526 5.526 7 C 0.209 3.791 8 C -0.502 4.502 9 H 0.082 0.918 10 C 0.005 3.995 11 N -0.935 5.935 12 Si 0.951 3.049 13 H -0.263 1.263 14 H -0.286 1.286 15 H -0.283 1.283 16 C 0.076 3.924 17 C -0.105 4.105 18 C -0.115 4.115 19 C -0.136 4.136 20 N -0.371 5.371 21 C 0.090 3.910 22 N -0.347 5.347 23 H 0.097 0.903 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.061 0.939 27 H 0.105 0.895 28 H -0.031 1.031 29 H 0.015 0.985 30 H 0.260 0.740 31 H 0.071 0.929 32 H 0.012 0.988 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.035 0.965 37 H 0.049 0.951 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.829 -7.282 2.379 14.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.076 4.076 3 N -0.296 5.296 4 C 0.020 3.980 5 C -0.002 4.002 6 N -0.251 5.251 7 C 0.084 3.916 8 C -0.540 4.540 9 H 0.100 0.900 10 C -0.192 4.192 11 N -0.577 5.577 12 Si 0.778 3.222 13 H -0.186 1.186 14 H -0.212 1.212 15 H -0.209 1.209 16 C -0.052 4.052 17 C -0.124 4.124 18 C -0.172 4.172 19 C -0.194 4.194 20 N -0.160 5.160 21 C -0.051 4.051 22 N -0.178 5.178 23 H 0.115 0.885 24 H 0.109 0.891 25 H 0.110 0.890 26 H 0.079 0.921 27 H 0.123 0.877 28 H -0.014 1.014 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.030 0.970 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.909 -8.127 2.182 14.582 hybrid contribution 1.112 0.959 -0.120 1.473 sum -10.797 -7.169 2.062 13.123 Atomic orbital electron populations 1.20209 0.81459 1.04743 1.04713 1.24999 0.99758 0.85329 0.97546 1.70354 1.00433 1.31792 1.26992 1.24176 0.94557 0.84145 0.95089 1.20572 0.91401 0.95516 0.92715 1.62069 1.03878 1.47881 1.11263 1.19504 0.84874 0.89967 0.97284 1.21694 1.00868 1.31702 0.99736 0.90000 1.25723 0.98001 0.95477 1.00023 1.70075 1.15010 1.37252 1.35322 0.85590 0.78480 0.77683 0.80467 1.18649 1.21242 1.20915 1.22054 0.94165 0.94178 0.94787 1.21350 1.00658 0.96552 0.93818 1.21480 1.00005 0.96143 0.99560 1.21748 0.98086 0.99355 1.00242 1.50305 1.06483 1.05757 1.53476 1.22231 0.81894 0.95960 1.05000 1.77868 0.87345 1.23432 1.29135 0.88500 0.89072 0.88951 0.92136 0.87714 1.01374 0.96718 0.93099 0.91114 0.96988 0.90224 0.93416 0.93135 0.94638 0.93194 0.92032 0.92734 0.88359 0.88117 0.88293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.05 10.51 71.24 0.75 -0.30 16 2 C 0.21 6.29 8.14 138.63 1.13 7.42 16 3 N -0.57 -19.49 10.06 -179.72 -1.81 -21.30 16 4 C 0.30 10.03 6.65 138.22 0.92 10.95 16 5 C 0.13 4.43 5.05 85.56 0.43 4.87 16 6 N -0.53 -21.02 3.70 -905.41 -3.35 -24.37 16 7 C 0.21 10.13 4.79 85.56 0.41 10.54 16 8 C -0.50 -25.83 7.24 25.60 0.19 -25.64 16 9 H 0.08 4.11 4.58 -2.91 -0.01 4.10 16 10 C 0.01 0.29 5.46 84.65 0.46 0.75 16 11 N -0.94 -53.48 13.29 21.45 0.28 -53.19 16 12 Si 0.95 42.50 29.54 68.60 2.03 44.52 16 13 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 14 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 15 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 16 C 0.08 2.96 4.27 86.30 0.37 3.33 16 17 C -0.11 -3.94 2.40 -10.79 -0.03 -3.97 16 18 C -0.11 -4.09 8.40 71.98 0.60 -3.49 16 19 C -0.14 -4.22 9.19 71.98 0.66 -3.56 16 20 N -0.37 -11.52 4.04 -359.88 -1.45 -12.97 16 21 C 0.09 2.08 11.16 127.77 1.43 3.51 16 22 N -0.35 -11.17 12.70 -51.33 -0.65 -11.82 16 23 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 25 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.06 2.10 8.12 -2.39 -0.02 2.09 16 27 H 0.10 3.28 7.42 -2.39 -0.02 3.26 16 28 H -0.03 -1.69 7.67 -2.39 -0.02 -1.71 16 29 H 0.01 0.75 7.65 -2.39 -0.02 0.73 16 30 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 31 H 0.07 2.70 6.04 -2.38 -0.01 2.69 16 32 H 0.01 0.49 7.74 -2.39 -0.02 0.47 16 33 H 0.08 3.52 5.14 -2.39 -0.01 3.51 16 34 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.05 2.00 6.74 -2.38 -0.02 1.98 16 36 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.10 2.05 8.14 -2.39 -0.02 2.04 16 42 H 0.10 2.43 7.72 -2.39 -0.02 2.41 16 Total: -1.00 -63.43 336.44 3.36 -60.07 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.99 Total: 14.67 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 7.32 Total: 4.39 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -6.98 Total: -123.66 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -63.43 3.36 -60.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686621497.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.490 kcal (2) G-P(sol) polarization free energy of solvation -63.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds