Wall clock time and date at job start Mon Mar 30 2020 04:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 120.00271 * 2 1 4 4 C 1.50703 * 109.47067 * 269.99875 * 3 2 1 5 5 H 1.08005 * 119.99711 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00286 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99761 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00272 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47148 * 89.99653 * 8 6 4 10 10 H 1.48496 * 109.47010 * 210.00013 * 8 6 4 11 11 H 1.48501 * 109.46644 * 329.99739 * 8 6 4 12 12 C 1.34777 * 119.99854 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00162 * 180.02562 * 12 2 1 14 14 C 1.50696 * 120.00141 * 0.02562 * 12 2 1 15 15 C 1.52993 * 109.47429 * 179.97438 * 14 12 2 16 16 N 1.46906 * 109.47378 * 179.97438 * 15 14 12 17 17 C 1.50046 * 110.99791 * 288.17007 * 16 15 14 18 18 C 1.51714 * 101.83851 * 211.53446 * 17 16 15 19 19 H 1.08999 * 113.02931 * 290.62623 * 18 17 16 20 20 C 1.49772 * 129.79433 * 131.98312 * 18 17 16 21 21 C 1.54993 * 80.69821 * 227.28447 * 20 18 17 22 22 C 1.49458 * 81.32123 * 46.44929 * 21 20 18 23 23 H 1.09001 * 113.34184 * 65.72718 * 22 21 20 24 24 C 1.49661 * 111.00020 * 170.00125 * 16 15 14 25 25 H 1.09002 * 109.47335 * 270.00739 * 1 2 3 26 26 H 1.08999 * 109.46626 * 30.00758 * 1 2 3 27 27 H 1.08996 * 109.47068 * 150.00171 * 1 2 3 28 28 H 1.09005 * 109.47188 * 29.99177 * 3 2 1 29 29 H 1.08999 * 109.47701 * 150.00044 * 3 2 1 30 30 H 0.97009 * 119.99873 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.47043 * 59.99777 * 14 12 2 32 32 H 1.09004 * 109.47476 * 299.99851 * 14 12 2 33 33 H 1.09004 * 109.46862 * 60.00067 * 15 14 12 34 34 H 1.09000 * 109.47250 * 300.00090 * 15 14 12 35 35 H 1.08997 * 110.95816 * 329.66938 * 17 16 15 36 36 H 1.08998 * 110.95295 * 93.40092 * 17 16 15 37 37 H 1.08994 * 114.58997 * 340.85099 * 20 18 17 38 38 H 1.09002 * 114.58779 * 114.74949 * 20 18 17 39 39 H 1.09003 * 114.17141 * 293.25528 * 21 20 18 40 40 H 1.09003 * 114.67969 * 159.65826 * 21 20 18 41 41 H 1.08997 * 110.39917 * 231.24162 * 24 16 15 42 42 H 1.09007 * 110.40172 * 353.65959 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0982 1.0956 -2.2417 6 6 3.1271 2.8772 -1.6729 7 7 3.5544 3.6174 -0.6732 8 14 3.4391 3.4161 -3.4341 9 1 2.3095 4.2593 -3.9012 10 1 4.6997 4.1984 -3.4964 11 1 3.5561 2.2187 -4.3046 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3795 -3.6352 0.0005 16 7 1.6450 -4.9074 0.0011 17 6 0.9983 -5.1543 1.3324 18 6 1.0348 -6.6684 1.4202 19 1 0.3622 -7.1529 0.7124 20 6 1.4806 -7.5530 2.5435 21 6 2.2261 -8.2411 1.3718 22 6 2.5762 -6.8221 1.0595 23 1 3.2106 -6.3576 1.8145 24 6 2.5684 -6.0600 -0.2414 25 1 -0.3634 0.0001 1.0277 26 1 -0.3632 0.8899 -0.5140 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6084 2.0284 0.5137 29 1 3.1500 1.1384 0.5138 30 1 4.0320 4.4430 -0.8505 31 1 0.7590 -2.5302 -0.8897 32 1 0.7584 -2.5299 0.8903 33 1 3.0062 -3.5775 0.8906 34 1 3.0062 -3.5775 -0.8894 35 1 1.5785 -4.7031 2.1373 36 1 -0.0282 -4.7879 1.3410 37 1 2.1207 -7.0650 3.2785 38 1 0.6888 -8.1567 2.9871 39 1 1.5698 -8.7181 0.6439 40 1 3.0703 -8.8622 1.6716 41 1 2.1887 -6.6879 -1.0474 42 1 3.5702 -5.7011 -0.4778 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688300669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:53 Heat of formation + Delta-G solvation = 51.801964 kcal Electronic energy + Delta-G solvation = -20361.105492 eV Core-core repulsion = 17344.366776 eV Total energy + Delta-G solvation = -3016.738716 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.61861 -38.96432 -36.12967 -34.74179 -32.63533 -31.27343 -29.05489 -27.98052 -26.46166 -25.48838 -23.76198 -23.15295 -21.60128 -20.99970 -20.12841 -18.30761 -16.54495 -16.41140 -15.87759 -15.48743 -15.02178 -14.89722 -14.60323 -14.50708 -14.12214 -13.50466 -13.16215 -12.74329 -12.43071 -12.21152 -12.14685 -12.09222 -11.89182 -11.78863 -11.45169 -11.41757 -11.22532 -11.01466 -10.92153 -10.85572 -10.68866 -10.52470 -10.13584 -9.60148 -9.26461 -8.85393 -8.45446 -8.41773 -7.60522 -6.02406 -4.07077 3.31488 3.37767 3.38589 3.41641 3.50036 3.65535 4.15840 4.21614 4.45653 4.47133 4.55121 4.97757 5.12248 5.18466 5.20826 5.24265 5.27958 5.32986 5.44879 5.50677 5.56339 5.63169 5.66622 5.67228 5.72005 5.82560 5.85513 5.94531 5.98893 6.13029 6.13658 6.18257 6.26778 6.73959 6.98888 7.08925 7.46700 7.57740 7.94325 8.25986 8.46097 8.92757 9.13751 9.58065 11.05691 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.040201 B = 0.003453 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.339542 B = 8106.144687 C = 8361.734938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.604 5.604 3 C 0.244 3.756 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.504 3.496 13 O -0.547 6.547 14 C -0.131 4.131 15 C 0.065 3.935 16 N -0.521 5.521 17 C 0.052 3.948 18 C -0.156 4.156 19 H 0.106 0.894 20 C -0.114 4.114 21 C -0.105 4.105 22 C -0.180 4.180 23 H 0.093 0.907 24 C 0.057 3.943 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.031 0.969 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.042 0.958 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.555 -20.911 5.125 22.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.290 3.710 13 O -0.425 6.425 14 C -0.172 4.172 15 C -0.064 4.064 16 N -0.245 5.245 17 C -0.075 4.075 18 C -0.175 4.175 19 H 0.124 0.876 20 C -0.152 4.152 21 C -0.143 4.143 22 C -0.199 4.199 23 H 0.111 0.889 24 C -0.070 4.070 25 H 0.061 0.939 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.110 0.890 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.203 -20.613 4.727 22.341 hybrid contribution 0.696 0.593 -0.374 0.988 sum -6.506 -20.021 4.353 21.497 Atomic orbital electron populations 1.21635 0.81435 1.02639 1.00323 1.48159 1.06196 1.07874 1.71338 1.19277 0.92536 0.78195 0.97472 1.21450 1.36392 1.06228 0.92345 0.92459 1.24947 0.95370 0.96411 0.97466 1.69941 1.38475 1.14360 1.30732 0.86488 0.77656 0.78585 0.84650 1.20637 1.21092 1.19866 1.20334 0.88071 0.85220 0.77361 1.90657 1.14039 1.87401 1.50408 1.21572 0.99190 0.92541 1.03901 1.22027 0.94609 0.87444 1.02315 1.65613 1.28331 1.01817 1.28734 1.22527 1.00067 0.94291 0.90630 1.23720 0.97251 0.95650 1.00861 0.87583 1.22508 0.99898 0.97622 0.95124 1.22367 0.99985 0.93986 0.97939 1.23764 0.98343 0.98437 0.99372 0.88854 1.22122 0.96108 0.92436 0.96301 0.93869 0.90852 0.92277 0.95075 0.93912 0.92743 0.88770 0.89963 0.93933 0.89903 0.93087 0.90169 0.89211 0.91407 0.89036 0.91638 0.90270 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.36 10.24 59.85 0.61 1.97 16 2 N -0.60 -13.17 2.86 -182.95 -0.52 -13.69 16 3 C 0.24 6.56 5.16 -5.19 -0.03 6.54 16 4 C -0.53 -15.24 9.39 -34.44 -0.32 -15.56 16 5 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 8 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.50 10.73 7.67 -10.99 -0.08 10.65 16 13 O -0.55 -14.05 15.56 5.56 0.09 -13.96 16 14 C -0.13 -2.03 4.34 -27.89 -0.12 -2.15 16 15 C 0.06 0.96 3.98 -3.82 -0.02 0.95 16 16 N -0.52 -6.43 5.34 -231.59 -1.24 -7.67 16 17 C 0.05 0.55 5.65 -2.71 -0.02 0.53 16 18 C -0.16 -1.37 4.42 -106.73 -0.47 -1.84 16 19 H 0.11 0.92 7.52 -51.93 -0.39 0.53 16 20 C -0.11 -0.82 8.04 -42.51 -0.34 -1.17 16 21 C -0.10 -0.75 8.00 -44.65 -0.36 -1.11 16 22 C -0.18 -1.65 4.35 -105.35 -0.46 -2.11 16 23 H 0.09 0.93 7.38 -51.93 -0.38 0.55 16 24 C 0.06 0.62 6.64 -3.40 -0.02 0.60 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 27 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 28 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 29 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.09 1.37 7.40 -51.93 -0.38 0.98 16 32 H 0.08 1.10 7.56 -51.93 -0.39 0.71 16 33 H 0.04 0.68 7.77 -51.93 -0.40 0.27 16 34 H 0.08 1.36 7.92 -51.93 -0.41 0.95 16 35 H 0.05 0.57 7.67 -51.93 -0.40 0.17 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 0.65 7.51 -51.93 -0.39 0.26 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.60 7.52 -51.93 -0.39 0.21 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.72 7.57 -51.93 -0.39 0.32 16 LS Contribution 333.90 15.07 5.03 5.03 Total: -1.00 -33.00 333.90 -9.80 -42.80 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -7.15 Total: -2.31 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -1.72 Total: -1.05 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -1.02 Total: -47.69 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.09 Total: -13.96 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.00 -9.80 -42.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688300669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.601 kcal (2) G-P(sol) polarization free energy of solvation -32.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds