Wall clock time and date at job start Mon Mar 30 2020 04:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 120.00271 * 2 1 4 4 C 1.50703 * 109.47067 * 269.99875 * 3 2 1 5 5 H 1.08005 * 119.99711 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00286 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99761 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00272 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47148 * 89.99653 * 8 6 4 10 10 H 1.48496 * 109.47010 * 210.00013 * 8 6 4 11 11 H 1.48501 * 109.46644 * 329.99739 * 8 6 4 12 12 C 1.34777 * 119.99854 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00162 * 180.02562 * 12 2 1 14 14 C 1.50696 * 120.00141 * 0.02562 * 12 2 1 15 15 C 1.52993 * 109.47429 * 179.97438 * 14 12 2 16 16 N 1.46906 * 109.47378 * 179.97438 * 15 14 12 17 17 C 1.50046 * 110.99791 * 288.17007 * 16 15 14 18 18 C 1.51714 * 101.83851 * 211.53446 * 17 16 15 19 19 H 1.08999 * 113.02931 * 290.62623 * 18 17 16 20 20 C 1.49772 * 129.79433 * 131.98312 * 18 17 16 21 21 C 1.54993 * 80.69821 * 227.28447 * 20 18 17 22 22 C 1.49458 * 81.32123 * 46.44929 * 21 20 18 23 23 H 1.09001 * 113.34184 * 65.72718 * 22 21 20 24 24 C 1.49661 * 111.00020 * 170.00125 * 16 15 14 25 25 H 1.09002 * 109.47335 * 270.00739 * 1 2 3 26 26 H 1.08999 * 109.46626 * 30.00758 * 1 2 3 27 27 H 1.08996 * 109.47068 * 150.00171 * 1 2 3 28 28 H 1.09005 * 109.47188 * 29.99177 * 3 2 1 29 29 H 1.08999 * 109.47701 * 150.00044 * 3 2 1 30 30 H 0.97009 * 119.99873 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.47043 * 59.99777 * 14 12 2 32 32 H 1.09004 * 109.47476 * 299.99851 * 14 12 2 33 33 H 1.09004 * 109.46862 * 60.00067 * 15 14 12 34 34 H 1.09000 * 109.47250 * 300.00090 * 15 14 12 35 35 H 1.08997 * 110.95816 * 329.66938 * 17 16 15 36 36 H 1.08998 * 110.95295 * 93.40092 * 17 16 15 37 37 H 1.08994 * 114.58997 * 340.85099 * 20 18 17 38 38 H 1.09002 * 114.58779 * 114.74949 * 20 18 17 39 39 H 1.09003 * 114.17141 * 293.25528 * 21 20 18 40 40 H 1.09003 * 114.67969 * 159.65826 * 21 20 18 41 41 H 1.08997 * 110.39917 * 231.24162 * 24 16 15 42 42 H 1.09007 * 110.40172 * 353.65959 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0982 1.0956 -2.2417 6 6 3.1271 2.8772 -1.6729 7 7 3.5544 3.6174 -0.6732 8 14 3.4391 3.4161 -3.4341 9 1 2.3095 4.2593 -3.9012 10 1 4.6997 4.1984 -3.4964 11 1 3.5561 2.2187 -4.3046 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3795 -3.6352 0.0005 16 7 1.6450 -4.9074 0.0011 17 6 0.9983 -5.1543 1.3324 18 6 1.0348 -6.6684 1.4202 19 1 0.3622 -7.1529 0.7124 20 6 1.4806 -7.5530 2.5435 21 6 2.2261 -8.2411 1.3718 22 6 2.5762 -6.8221 1.0595 23 1 3.2106 -6.3576 1.8145 24 6 2.5684 -6.0600 -0.2414 25 1 -0.3634 0.0001 1.0277 26 1 -0.3632 0.8899 -0.5140 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6084 2.0284 0.5137 29 1 3.1500 1.1384 0.5138 30 1 4.0320 4.4430 -0.8505 31 1 0.7590 -2.5302 -0.8897 32 1 0.7584 -2.5299 0.8903 33 1 3.0062 -3.5775 0.8906 34 1 3.0062 -3.5775 -0.8894 35 1 1.5785 -4.7031 2.1373 36 1 -0.0282 -4.7879 1.3410 37 1 2.1207 -7.0650 3.2785 38 1 0.6888 -8.1567 2.9871 39 1 1.5698 -8.7181 0.6439 40 1 3.0703 -8.8622 1.6716 41 1 2.1887 -6.6879 -1.0474 42 1 3.5702 -5.7011 -0.4778 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688300669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:53 Heat of formation + Delta-G solvation = 29.793157 kcal Electronic energy + Delta-G solvation = -20362.059866 eV Core-core repulsion = 17344.366776 eV Total energy + Delta-G solvation = -3017.693089 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.35662 -40.65739 -37.16984 -36.52643 -34.75909 -32.56044 -29.86476 -29.84432 -27.68204 -27.05391 -24.93322 -24.39847 -22.93831 -21.68638 -20.97116 -19.95018 -18.72041 -17.93431 -17.18068 -16.95431 -16.47795 -16.06439 -15.80924 -15.67147 -15.34960 -14.73892 -14.39943 -14.11779 -13.77985 -13.69230 -13.48532 -13.41190 -13.22168 -12.96367 -12.81481 -12.70721 -12.52381 -12.36214 -12.22009 -12.12557 -11.96744 -11.83815 -11.71897 -11.56113 -10.65976 -10.63190 -9.94610 -9.45771 -9.42826 -8.24285 -6.39582 1.35231 1.38517 1.49013 1.81625 2.26662 2.40740 2.66785 2.94205 3.05076 3.60982 3.79274 3.81449 3.83928 3.93741 4.12614 4.23708 4.40024 4.40924 4.47567 4.58755 4.62476 4.71312 4.78533 4.83832 4.86429 4.90878 4.96155 4.97743 5.00391 5.03982 5.10822 5.18086 5.20746 5.30363 5.45788 5.54444 5.77687 5.82669 5.95877 6.04280 6.67584 6.77253 7.26163 7.46268 8.82894 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.040201 B = 0.003453 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.339542 B = 8106.144687 C = 8361.734938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.970 3.030 9 H -0.261 1.261 10 H -0.280 1.280 11 H -0.273 1.273 12 C 0.493 3.507 13 O -0.603 6.603 14 C -0.111 4.111 15 C 0.074 3.926 16 N -0.521 5.521 17 C 0.047 3.953 18 C -0.147 4.147 19 H 0.114 0.886 20 C -0.108 4.108 21 C -0.096 4.096 22 C -0.186 4.186 23 H 0.080 0.920 24 C 0.053 3.947 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.095 0.905 28 H 0.024 0.976 29 H -0.004 1.004 30 H 0.268 0.732 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.023 0.977 34 H 0.060 0.940 35 H 0.042 0.958 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.710 -22.649 4.457 25.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.342 5.342 3 C 0.136 3.864 4 C -0.583 4.583 5 H 0.071 0.929 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.186 1.186 10 H -0.206 1.206 11 H -0.198 1.198 12 C 0.282 3.718 13 O -0.485 6.485 14 C -0.151 4.151 15 C -0.055 4.055 16 N -0.245 5.245 17 C -0.080 4.080 18 C -0.166 4.166 19 H 0.132 0.868 20 C -0.146 4.146 21 C -0.134 4.134 22 C -0.205 4.205 23 H 0.099 0.901 24 C -0.074 4.074 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.113 0.887 28 H 0.042 0.958 29 H 0.014 0.986 30 H 0.076 0.924 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.042 0.958 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.122 0.878 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.416 -22.372 4.070 24.611 hybrid contribution 1.365 1.112 -0.113 1.764 sum -8.051 -21.259 3.956 23.075 Atomic orbital electron populations 1.21947 0.77705 1.04088 1.02631 1.48209 1.08537 1.06370 1.71105 1.18756 0.91052 0.80493 0.96057 1.21716 1.36937 1.06613 0.93030 0.92886 1.25899 0.94823 0.96389 1.02183 1.70060 1.38916 1.14828 1.33116 0.85379 0.78149 0.78210 0.78856 1.18622 1.20552 1.19791 1.21393 0.87788 0.86783 0.75792 1.90625 1.16803 1.88305 1.52768 1.21473 0.98745 0.88739 1.06124 1.21810 0.94314 0.88983 1.00411 1.65647 1.28027 1.00909 1.29945 1.22607 1.00130 0.95914 0.89356 1.23777 0.96506 0.94463 1.01851 0.86774 1.22494 1.00147 0.97152 0.94811 1.22399 1.00354 0.92713 0.97905 1.23757 0.98836 1.00081 0.97855 0.90143 1.22164 0.95222 0.92315 0.97652 0.91056 0.91559 0.88690 0.95799 0.98608 0.92350 0.86732 0.86944 0.95825 0.92153 0.93995 0.88995 0.89559 0.89797 0.87774 0.90930 0.89155 0.93414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.37 10.24 127.77 1.31 3.68 16 2 N -0.61 -26.80 2.86 -851.13 -2.43 -29.23 16 3 C 0.26 14.39 5.16 85.63 0.44 14.83 16 4 C -0.54 -32.28 9.39 25.60 0.24 -32.04 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.35 5.46 84.65 0.46 0.81 16 7 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16 8 Si 0.97 45.74 29.54 68.60 2.03 47.77 16 9 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 12 C 0.49 21.29 7.67 87.66 0.67 21.97 16 13 O -0.60 -32.52 15.56 -3.03 -0.05 -32.57 16 14 C -0.11 -3.26 4.34 29.84 0.13 -3.13 16 15 C 0.07 2.22 3.98 86.30 0.34 2.56 16 16 N -0.52 -12.21 5.34 -886.61 -4.73 -16.95 16 17 C 0.05 0.89 5.65 85.26 0.48 1.38 16 18 C -0.15 -2.21 4.42 -21.23 -0.09 -2.30 16 19 H 0.11 1.59 7.52 -2.39 -0.02 1.57 16 20 C -0.11 -1.29 8.04 20.37 0.16 -1.12 16 21 C -0.10 -1.13 8.00 18.99 0.15 -0.98 16 22 C -0.19 -3.18 4.35 -20.34 -0.09 -3.27 16 23 H 0.08 1.59 7.38 -2.39 -0.02 1.57 16 24 C 0.05 1.12 6.64 85.04 0.56 1.68 16 25 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.07 2.12 8.07 -2.39 -0.02 2.10 16 27 H 0.09 2.20 6.44 -2.39 -0.02 2.19 16 28 H 0.02 1.34 8.07 -2.38 -0.02 1.32 16 29 H 0.00 -0.27 7.42 -2.39 -0.02 -0.29 16 30 H 0.27 15.42 8.31 -92.70 -0.77 14.64 16 31 H 0.11 2.97 7.40 -2.38 -0.02 2.96 16 32 H 0.11 2.67 7.56 -2.39 -0.02 2.65 16 33 H 0.02 0.78 7.77 -2.38 -0.02 0.76 16 34 H 0.06 2.06 7.92 -2.39 -0.02 2.04 16 35 H 0.04 0.89 7.67 -2.39 -0.02 0.87 16 36 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 37 H 0.09 1.11 7.51 -2.39 -0.02 1.09 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.10 1.01 7.52 -2.39 -0.02 0.99 16 40 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.05 1.13 7.57 -2.38 -0.02 1.11 16 Total: -1.00 -74.69 333.90 0.85 -73.83 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 0.98 Total: 10.14 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 4.78 Total: 4.06 kcal Atomic # 7 Polarization: -96.36 SS G_CDS: -6.88 Total: -103.24 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -0.05 Total: -32.57 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -74.69 0.85 -73.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688300669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.627 kcal (2) G-P(sol) polarization free energy of solvation -74.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds