Wall clock time and date at job start Mon Mar 30 2020 04:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.50697 * 109.47293 * 270.00491 * 3 2 1 5 5 H 1.07997 * 120.00010 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00091 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00149 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00247 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47151 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47614 * 119.99582 * 8 6 4 11 11 H 1.48497 * 109.46911 * 239.99550 * 8 6 4 12 12 C 1.34784 * 119.99971 * 180.02562 * 2 1 3 13 13 O 1.21283 * 119.99649 * 179.97438 * 12 2 1 14 14 C 1.50697 * 119.99774 * 359.72768 * 12 2 1 15 15 C 1.53003 * 109.46624 * 180.02562 * 14 12 2 16 16 N 1.46905 * 109.46669 * 179.97438 * 15 14 12 17 17 C 1.47064 * 110.99676 * 169.99630 * 16 15 14 18 18 C 1.53750 * 107.94298 * 123.85784 * 17 16 15 19 19 H 1.08998 * 115.04790 * 245.32272 * 18 17 16 20 20 C 1.53808 * 113.17778 * 108.67551 * 18 17 16 21 21 C 1.53732 * 87.31353 * 280.79297 * 20 18 17 22 22 C 1.53586 * 87.28340 * 334.48157 * 21 20 18 23 23 H 1.08995 * 116.01655 * 267.02564 * 22 21 20 24 24 C 1.47159 * 110.99907 * 291.65230 * 16 15 14 25 25 H 1.08999 * 109.47256 * 269.99572 * 1 2 3 26 26 H 1.08998 * 109.47416 * 29.99674 * 1 2 3 27 27 H 1.09008 * 109.47058 * 150.00274 * 1 2 3 28 28 H 1.08997 * 109.46865 * 30.00228 * 3 2 1 29 29 H 1.08998 * 109.47058 * 149.99741 * 3 2 1 30 30 H 0.96995 * 120.00744 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.46809 * 299.99238 * 14 12 2 32 32 H 1.08993 * 109.47525 * 59.99679 * 14 12 2 33 33 H 1.09001 * 109.46782 * 299.99104 * 15 14 12 34 34 H 1.08993 * 109.47555 * 59.99547 * 15 14 12 35 35 H 1.08999 * 109.77051 * 243.48330 * 17 16 15 36 36 H 1.08997 * 109.77283 * 4.22180 * 17 16 15 37 37 H 1.08998 * 113.57900 * 35.40184 * 20 18 17 38 38 H 1.08999 * 113.57351 * 166.10823 * 20 18 17 39 39 H 1.08994 * 113.58042 * 89.08398 * 21 20 18 40 40 H 1.08998 * 113.57845 * 219.80609 * 21 20 18 41 41 H 1.08994 * 110.00718 * 338.59218 * 24 16 15 42 42 H 1.09007 * 109.99755 * 99.94835 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1268 2.8775 -1.6727 7 7 3.5543 3.6176 -0.6731 8 14 3.4387 3.4165 -3.4338 9 1 2.8616 2.4161 -4.3672 10 1 2.8017 4.7373 -3.6675 11 1 4.9014 3.5243 -3.6668 12 6 2.1389 -1.1673 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 0.0051 15 6 2.3797 -3.6352 0.0039 16 7 1.6451 -4.9074 0.0100 17 6 2.5516 -6.0404 -0.2294 18 6 2.4019 -7.0229 0.9437 19 1 3.2896 -7.1377 1.5656 20 6 1.6764 -8.3226 0.5561 21 6 0.3606 -7.5350 0.6641 22 6 1.0861 -6.5991 1.6421 23 1 0.9920 -6.8465 2.6995 24 6 0.9476 -5.1075 1.2902 25 1 -0.3634 -0.0001 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8901 -0.5138 28 1 1.6084 2.0283 0.5139 29 1 3.1499 1.1383 0.5139 30 1 4.0311 4.4434 -0.8502 31 1 0.7625 -2.5283 0.8979 32 1 0.7550 -2.5318 -0.8821 33 1 3.0029 -3.5794 -0.8886 34 1 3.0097 -3.5756 0.8913 35 1 2.2835 -6.5364 -1.1623 36 1 3.5804 -5.6845 -0.2836 37 1 1.8998 -8.6616 -0.4555 38 1 1.7742 -9.1145 1.2987 39 1 0.0653 -7.0497 -0.2661 40 1 -0.4504 -8.1017 1.1214 41 1 1.4096 -4.4969 2.0660 42 1 -0.1052 -4.8451 1.1861 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688300670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:55 Heat of formation + Delta-G solvation = -10.093020 kcal Electronic energy + Delta-G solvation = -20390.399822 eV Core-core repulsion = 17370.977138 eV Total energy + Delta-G solvation = -3019.422684 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.81233 -38.92410 -35.73319 -34.71542 -32.61895 -30.89691 -29.49156 -27.88044 -26.48682 -25.59223 -23.99207 -23.53944 -22.12527 -20.55397 -19.01303 -18.20880 -16.82551 -16.52038 -16.07693 -15.53237 -15.18117 -14.87428 -14.32301 -14.20104 -14.02162 -13.66147 -13.19532 -13.09481 -12.53526 -12.17898 -12.15190 -12.11879 -11.89990 -11.76511 -11.54941 -11.26844 -11.02388 -10.88486 -10.83188 -10.71334 -10.54243 -10.32173 -10.25735 -10.13661 -9.58334 -8.85434 -8.42091 -8.34465 -7.60315 -6.02489 -4.07102 3.31125 3.38267 3.42002 3.50208 3.74079 4.11454 4.20213 4.34999 4.43900 4.49153 4.62168 4.99791 5.11578 5.23567 5.25982 5.31056 5.34581 5.39096 5.46465 5.54730 5.58442 5.63849 5.67431 5.70747 5.79620 5.85178 5.87344 5.96903 6.09881 6.16495 6.18064 6.26564 6.26906 6.98572 7.05464 7.09551 7.46919 7.57953 7.94371 8.26013 8.46210 8.93064 9.13914 9.58111 11.05656 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039309 B = 0.003495 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.133446 B = 8009.276430 C = 8258.939304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.604 5.604 3 C 0.244 3.756 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.504 3.496 13 O -0.547 6.547 14 C -0.133 4.133 15 C 0.069 3.931 16 N -0.530 5.530 17 C 0.060 3.940 18 C -0.137 4.137 19 H 0.085 0.915 20 C -0.130 4.130 21 C -0.127 4.127 22 C -0.122 4.122 23 H 0.102 0.898 24 C 0.050 3.950 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.031 0.969 29 H 0.043 0.957 30 H 0.262 0.738 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.078 0.922 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.140 -20.691 4.255 22.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.125 3.875 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.290 3.710 13 O -0.425 6.425 14 C -0.173 4.173 15 C -0.059 4.059 16 N -0.254 5.254 17 C -0.068 4.068 18 C -0.156 4.156 19 H 0.104 0.896 20 C -0.167 4.167 21 C -0.164 4.164 22 C -0.141 4.141 23 H 0.120 0.880 24 C -0.078 4.078 25 H 0.061 0.939 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.760 -20.447 3.888 22.213 hybrid contribution 0.716 0.490 -0.267 0.907 sum -7.044 -19.957 3.620 21.471 Atomic orbital electron populations 1.21633 0.81442 1.02632 1.00315 1.48162 1.06193 1.07878 1.71341 1.19280 0.92542 0.78204 0.97487 1.21487 1.36286 1.06204 0.92366 0.92399 1.24949 0.95389 0.96417 0.97464 1.69944 1.38532 1.14355 1.30671 0.86434 0.78069 0.78287 0.84592 1.19777 1.20972 1.20883 1.20336 0.88072 0.85214 0.77363 1.90660 1.14034 1.87398 1.50400 1.21603 0.99225 0.92603 1.03901 1.22031 0.94433 0.87067 1.02332 1.63129 1.28127 1.02070 1.32109 1.22438 0.95943 0.90782 0.97607 1.23513 0.97421 0.96693 0.98002 0.89640 1.22822 0.96516 0.95792 1.01606 1.22798 0.96349 0.97289 1.00000 1.23491 0.96659 0.94792 0.99193 0.87992 1.22624 0.99872 0.95018 0.90241 0.93874 0.90861 0.92281 0.95069 0.93913 0.92797 0.89941 0.88761 0.89945 0.93867 0.90340 0.92435 0.91382 0.90352 0.89084 0.91784 0.93307 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.36 10.24 59.85 0.61 1.97 16 2 N -0.60 -13.11 2.86 -182.96 -0.52 -13.63 16 3 C 0.24 6.54 5.16 -5.20 -0.03 6.51 16 4 C -0.52 -15.18 9.39 -34.44 -0.32 -15.50 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 8 Si 0.90 22.17 29.54 -169.99 -5.02 17.14 16 9 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 12 C 0.50 10.67 7.67 -10.98 -0.08 10.59 16 13 O -0.55 -13.98 15.56 5.56 0.09 -13.89 16 14 C -0.13 -2.03 4.29 -27.88 -0.12 -2.14 16 15 C 0.07 1.02 3.79 -3.82 -0.01 1.01 16 16 N -0.53 -6.44 4.96 -233.21 -1.16 -7.60 16 17 C 0.06 0.65 6.00 -3.34 -0.02 0.63 16 18 C -0.14 -1.25 5.13 -88.82 -0.46 -1.71 16 19 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 20 C -0.13 -1.00 7.57 -25.93 -0.20 -1.19 16 21 C -0.13 -1.03 7.28 -26.05 -0.19 -1.22 16 22 C -0.12 -1.08 5.02 -88.87 -0.45 -1.53 16 23 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 24 C 0.05 0.53 5.33 -3.23 -0.02 0.51 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 27 H 0.06 0.79 6.44 -51.92 -0.33 0.45 16 28 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 29 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.08 1.09 7.43 -51.93 -0.39 0.70 16 32 H 0.09 1.35 7.39 -51.93 -0.38 0.96 16 33 H 0.08 1.33 7.99 -51.93 -0.41 0.92 16 34 H 0.04 0.69 7.82 -51.93 -0.41 0.28 16 35 H 0.08 0.81 7.71 -51.93 -0.40 0.41 16 36 H 0.06 0.65 7.53 -51.93 -0.39 0.26 16 37 H 0.07 0.51 7.97 -51.93 -0.41 0.09 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.84 7.69 -51.93 -0.40 0.44 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.05 0.55 7.53 -51.93 -0.39 0.16 16 42 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 LS Contribution 333.89 15.07 5.03 5.03 Total: -1.00 -32.88 333.89 -9.45 -42.33 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -7.23 Total: -2.65 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -1.38 Total: -0.45 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -0.94 Total: -47.51 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.09 Total: -13.89 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.88 -9.45 -42.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688300670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.236 kcal (2) G-P(sol) polarization free energy of solvation -32.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds