Wall clock time and date at job start Mon Mar 30 2020 04:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.50697 * 109.47293 * 270.00491 * 3 2 1 5 5 H 1.07997 * 120.00010 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00091 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00149 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00247 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47151 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47614 * 119.99582 * 8 6 4 11 11 H 1.48497 * 109.46911 * 239.99550 * 8 6 4 12 12 C 1.34784 * 119.99971 * 180.02562 * 2 1 3 13 13 O 1.21283 * 119.99649 * 179.97438 * 12 2 1 14 14 C 1.50697 * 119.99774 * 359.72768 * 12 2 1 15 15 C 1.53003 * 109.46624 * 180.02562 * 14 12 2 16 16 N 1.46905 * 109.46669 * 179.97438 * 15 14 12 17 17 C 1.47064 * 110.99676 * 169.99630 * 16 15 14 18 18 C 1.53750 * 107.94298 * 123.85784 * 17 16 15 19 19 H 1.08998 * 115.04790 * 245.32272 * 18 17 16 20 20 C 1.53808 * 113.17778 * 108.67551 * 18 17 16 21 21 C 1.53732 * 87.31353 * 280.79297 * 20 18 17 22 22 C 1.53586 * 87.28340 * 334.48157 * 21 20 18 23 23 H 1.08995 * 116.01655 * 267.02564 * 22 21 20 24 24 C 1.47159 * 110.99907 * 291.65230 * 16 15 14 25 25 H 1.08999 * 109.47256 * 269.99572 * 1 2 3 26 26 H 1.08998 * 109.47416 * 29.99674 * 1 2 3 27 27 H 1.09008 * 109.47058 * 150.00274 * 1 2 3 28 28 H 1.08997 * 109.46865 * 30.00228 * 3 2 1 29 29 H 1.08998 * 109.47058 * 149.99741 * 3 2 1 30 30 H 0.96995 * 120.00744 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.46809 * 299.99238 * 14 12 2 32 32 H 1.08993 * 109.47525 * 59.99679 * 14 12 2 33 33 H 1.09001 * 109.46782 * 299.99104 * 15 14 12 34 34 H 1.08993 * 109.47555 * 59.99547 * 15 14 12 35 35 H 1.08999 * 109.77051 * 243.48330 * 17 16 15 36 36 H 1.08997 * 109.77283 * 4.22180 * 17 16 15 37 37 H 1.08998 * 113.57900 * 35.40184 * 20 18 17 38 38 H 1.08999 * 113.57351 * 166.10823 * 20 18 17 39 39 H 1.08994 * 113.58042 * 89.08398 * 21 20 18 40 40 H 1.08998 * 113.57845 * 219.80609 * 21 20 18 41 41 H 1.08994 * 110.00718 * 338.59218 * 24 16 15 42 42 H 1.09007 * 109.99755 * 99.94835 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1268 2.8775 -1.6727 7 7 3.5543 3.6176 -0.6731 8 14 3.4387 3.4165 -3.4338 9 1 2.8616 2.4161 -4.3672 10 1 2.8017 4.7373 -3.6675 11 1 4.9014 3.5243 -3.6668 12 6 2.1389 -1.1673 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 0.0051 15 6 2.3797 -3.6352 0.0039 16 7 1.6451 -4.9074 0.0100 17 6 2.5516 -6.0404 -0.2294 18 6 2.4019 -7.0229 0.9437 19 1 3.2896 -7.1377 1.5656 20 6 1.6764 -8.3226 0.5561 21 6 0.3606 -7.5350 0.6641 22 6 1.0861 -6.5991 1.6421 23 1 0.9920 -6.8465 2.6995 24 6 0.9476 -5.1075 1.2902 25 1 -0.3634 -0.0001 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8901 -0.5138 28 1 1.6084 2.0283 0.5139 29 1 3.1499 1.1383 0.5139 30 1 4.0311 4.4434 -0.8502 31 1 0.7625 -2.5283 0.8979 32 1 0.7550 -2.5318 -0.8821 33 1 3.0029 -3.5794 -0.8886 34 1 3.0097 -3.5756 0.8913 35 1 2.2835 -6.5364 -1.1623 36 1 3.5804 -5.6845 -0.2836 37 1 1.8998 -8.6616 -0.4555 38 1 1.7742 -9.1145 1.2987 39 1 0.0653 -7.0497 -0.2661 40 1 -0.4504 -8.1017 1.1214 41 1 1.4096 -4.4969 2.0660 42 1 -0.1052 -4.8451 1.1861 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688300670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:55 Heat of formation + Delta-G solvation = -31.847609 kcal Electronic energy + Delta-G solvation = -20391.343172 eV Core-core repulsion = 17370.977138 eV Total energy + Delta-G solvation = -3020.366034 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.61754 -40.58250 -36.87345 -36.39620 -34.74558 -32.19262 -30.28221 -29.74093 -27.58807 -27.07551 -25.29614 -24.53002 -23.60351 -21.53385 -20.05403 -19.51773 -18.71702 -18.04796 -17.20820 -17.07955 -16.76561 -16.20676 -15.88236 -15.35722 -14.91949 -14.70879 -14.44648 -14.21822 -13.97790 -13.84225 -13.56383 -13.45231 -13.17988 -12.91796 -12.85643 -12.70094 -12.61044 -12.48096 -12.22129 -12.07041 -11.84184 -11.68285 -11.49931 -11.00410 -10.93738 -10.66394 -10.61376 -9.42844 -9.32646 -8.23888 -6.39074 1.35554 1.38061 1.50194 1.82951 2.28301 2.41929 3.03197 3.05876 3.38940 3.66302 3.66987 3.86276 3.97342 3.99746 4.13876 4.31552 4.40913 4.44263 4.56771 4.61264 4.71110 4.75843 4.78355 4.87708 4.89349 4.94090 4.97283 4.99007 5.00905 5.07600 5.12927 5.17626 5.21586 5.42791 5.55362 5.62279 5.83327 6.01956 6.04885 6.08009 6.68484 6.78365 7.26805 7.47365 8.83468 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039309 B = 0.003495 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.133446 B = 8009.276430 C = 8258.939304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.543 4.543 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.970 3.030 9 H -0.267 1.267 10 H -0.268 1.268 11 H -0.281 1.281 12 C 0.494 3.506 13 O -0.603 6.603 14 C -0.112 4.112 15 C 0.078 3.922 16 N -0.528 5.528 17 C 0.056 3.944 18 C -0.143 4.143 19 H 0.085 0.915 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.118 4.118 23 H 0.117 0.883 24 C 0.045 3.955 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.024 0.976 29 H -0.004 1.004 30 H 0.267 0.733 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.060 0.940 34 H 0.024 0.976 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.041 0.959 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.214 -22.330 3.681 24.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.342 5.342 3 C 0.136 3.864 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.191 1.191 10 H -0.193 1.193 11 H -0.207 1.207 12 C 0.283 3.717 13 O -0.485 6.485 14 C -0.152 4.152 15 C -0.050 4.050 16 N -0.252 5.252 17 C -0.072 4.072 18 C -0.162 4.162 19 H 0.103 0.897 20 C -0.159 4.159 21 C -0.160 4.160 22 C -0.137 4.137 23 H 0.135 0.865 24 C -0.083 4.083 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.113 0.887 28 H 0.042 0.958 29 H 0.014 0.986 30 H 0.076 0.924 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.079 0.921 34 H 0.043 0.957 35 H 0.102 0.898 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.059 0.941 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.892 -22.107 3.321 24.446 hybrid contribution 1.363 0.981 -0.034 1.680 sum -8.529 -21.126 3.287 23.019 Atomic orbital electron populations 1.21945 0.77722 1.04073 1.02625 1.48211 1.08527 1.06376 1.71126 1.18756 0.91062 0.80515 0.96053 1.21746 1.36804 1.06569 0.93046 0.92867 1.25897 0.94859 0.96411 1.02153 1.70058 1.38977 1.14847 1.33055 0.85331 0.77886 0.78438 0.78932 1.19087 1.19254 1.20737 1.21399 0.87789 0.86776 0.75782 1.90628 1.16794 1.88302 1.52753 1.21503 0.98772 0.88763 1.06148 1.21822 0.94155 0.88567 1.00484 1.63158 1.27744 1.01111 1.33216 1.22496 0.95028 0.90851 0.98820 1.23517 0.97880 0.97384 0.97416 0.89703 1.22818 0.95641 0.95301 1.02174 1.22754 0.96901 0.97076 0.99296 1.23555 0.96351 0.93612 1.00215 0.86497 1.22732 1.00057 0.96337 0.89151 0.91055 0.91600 0.88681 0.95808 0.98596 0.92363 0.86911 0.86706 0.92113 0.95729 0.89769 0.93783 0.91189 0.88919 0.90169 0.90361 0.94076 0.88999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.36 10.24 127.77 1.31 3.67 16 2 N -0.61 -26.64 2.86 -851.13 -2.43 -29.08 16 3 C 0.26 14.32 5.16 85.63 0.44 14.76 16 4 C -0.54 -32.11 9.39 25.60 0.24 -31.87 16 5 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 6 C 0.01 0.33 5.46 84.65 0.46 0.79 16 7 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 8 Si 0.97 45.68 29.54 68.60 2.03 47.71 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 C 0.49 21.12 7.67 87.65 0.67 21.79 16 13 O -0.60 -32.29 15.56 -3.04 -0.05 -32.33 16 14 C -0.11 -3.24 4.29 29.85 0.13 -3.11 16 15 C 0.08 2.31 3.79 86.30 0.33 2.64 16 16 N -0.53 -12.16 4.96 -891.74 -4.42 -16.58 16 17 C 0.06 1.16 6.00 86.52 0.52 1.68 16 18 C -0.14 -2.38 5.13 -9.63 -0.05 -2.42 16 19 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 20 C -0.12 -1.56 7.57 31.11 0.24 -1.32 16 21 C -0.12 -1.65 7.28 31.04 0.23 -1.42 16 22 C -0.12 -1.79 5.02 -9.66 -0.05 -1.84 16 23 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 24 C 0.04 0.84 5.33 86.55 0.46 1.30 16 25 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 27 H 0.09 2.18 6.44 -2.38 -0.02 2.17 16 28 H 0.02 1.33 8.07 -2.39 -0.02 1.32 16 29 H 0.00 -0.26 7.42 -2.39 -0.02 -0.28 16 30 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 31 H 0.11 2.62 7.43 -2.39 -0.02 2.61 16 32 H 0.11 2.92 7.39 -2.39 -0.02 2.91 16 33 H 0.06 2.03 7.99 -2.39 -0.02 2.01 16 34 H 0.02 0.80 7.82 -2.39 -0.02 0.79 16 35 H 0.08 1.66 7.71 -2.39 -0.02 1.64 16 36 H 0.04 1.03 7.53 -2.39 -0.02 1.01 16 37 H 0.07 0.88 7.97 -2.39 -0.02 0.86 16 38 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 1.27 7.69 -2.39 -0.02 1.26 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.04 0.85 7.53 -2.39 -0.02 0.83 16 42 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 Total: -1.00 -74.22 333.89 1.31 -72.90 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 0.97 Total: 9.68 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 4.92 Total: 4.64 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -6.57 Total: -102.60 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.05 Total: -32.33 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -74.22 1.31 -72.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688300670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.056 kcal (2) G-P(sol) polarization free energy of solvation -74.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds