Wall clock time and date at job start Mon Mar 30 2020 04:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46495 * 119.99832 * 2 1 4 4 C 1.50699 * 109.47537 * 270.00406 * 3 2 1 5 5 H 1.08002 * 119.99887 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00079 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00340 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99633 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47146 * 90.00171 * 8 6 4 10 10 H 1.48507 * 109.46821 * 209.99727 * 8 6 4 11 11 H 1.48498 * 109.47328 * 329.99490 * 8 6 4 12 12 C 1.34768 * 119.99906 * 180.02562 * 2 1 3 13 13 O 1.21288 * 120.00273 * 180.02562 * 12 2 1 14 14 C 1.50701 * 120.00286 * 359.97438 * 12 2 1 15 15 C 1.52997 * 109.47315 * 180.02562 * 14 12 2 16 16 N 1.46896 * 109.47283 * 179.97438 * 15 14 12 17 17 C 1.49660 * 111.00230 * 169.99711 * 16 15 14 18 18 C 1.50779 * 104.63625 * 247.55551 * 17 16 15 19 19 H 1.09004 * 112.33869 * 78.32030 * 18 17 16 20 20 C 1.49457 * 131.22740 * 236.69582 * 18 17 16 21 21 C 1.56696 * 80.81377 * 135.19718 * 20 18 17 22 22 C 1.49763 * 81.08480 * 314.01454 * 21 20 18 23 23 H 1.09006 * 114.09228 * 290.65346 * 22 21 20 24 24 C 1.50410 * 111.02943 * 51.80233 * 16 15 14 25 25 H 1.09009 * 109.46737 * 269.99736 * 1 2 3 26 26 H 1.09001 * 109.47154 * 29.99206 * 1 2 3 27 27 H 1.08999 * 109.47199 * 149.99959 * 1 2 3 28 28 H 1.09003 * 109.47337 * 30.00927 * 3 2 1 29 29 H 1.09005 * 109.47133 * 149.99922 * 3 2 1 30 30 H 0.96994 * 120.00225 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.46967 * 60.00232 * 14 12 2 32 32 H 1.09002 * 109.47090 * 300.00439 * 14 12 2 33 33 H 1.08999 * 109.47159 * 60.00049 * 15 14 12 34 34 H 1.09002 * 109.47154 * 300.00098 * 15 14 12 35 35 H 1.09004 * 110.39882 * 128.76894 * 17 16 15 36 36 H 1.08998 * 110.50012 * 6.39888 * 17 16 15 37 37 H 1.09002 * 114.64598 * 22.20815 * 20 18 17 38 38 H 1.08996 * 114.64463 * 248.18404 * 20 18 17 39 39 H 1.09000 * 114.59673 * 67.06311 * 21 20 18 40 40 H 1.08998 * 114.59176 * 200.91777 * 21 20 18 41 41 H 1.09005 * 110.91628 * 30.34418 * 24 16 15 42 42 H 1.09000 * 111.03727 * 266.58726 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1268 2.8776 -1.6726 7 7 3.5541 3.6177 -0.6730 8 14 3.4386 3.4166 -3.4339 9 1 2.3090 4.2598 -3.9008 10 1 4.6992 4.1991 -3.4961 11 1 3.5557 2.2194 -4.3046 12 6 2.1388 -1.1671 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0005 16 7 1.6452 -4.9073 0.0001 17 6 2.5685 -6.0599 -0.2426 18 6 2.1701 -6.5886 -1.5972 19 1 2.5644 -5.9807 -2.4116 20 6 1.7293 -7.9486 -2.0332 21 6 0.6645 -7.0852 -2.7922 22 6 0.5940 -6.4168 -1.4539 23 1 0.1492 -7.0324 -0.6719 24 6 0.6231 -4.9411 -1.1029 25 1 -0.3633 0.0000 1.0278 26 1 -0.3633 0.8901 -0.5137 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6084 2.0283 0.5140 29 1 3.1499 1.1384 0.5139 30 1 4.0315 4.4432 -0.8502 31 1 0.7584 -2.5298 -0.8903 32 1 0.7590 -2.5302 0.8897 33 1 3.0062 -3.5774 0.8895 34 1 3.0063 -3.5774 -0.8905 35 1 2.4288 -6.8258 0.5204 36 1 3.6049 -5.7225 -0.2560 37 1 1.3244 -8.5723 -1.2362 38 1 2.4357 -8.4700 -2.6790 39 1 1.0701 -6.4625 -3.5895 40 1 -0.2377 -7.6260 -3.0781 41 1 0.9497 -4.3442 -1.9545 42 1 -0.3504 -4.6063 -0.7446 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688300672.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:57 Heat of formation + Delta-G solvation = 50.197622 kcal Electronic energy + Delta-G solvation = -20488.494236 eV Core-core repulsion = 17471.685951 eV Total energy + Delta-G solvation = -3016.808285 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.49447 -38.98304 -36.09899 -34.75576 -32.64719 -31.21809 -29.06577 -27.98921 -26.47054 -25.50806 -23.81000 -23.15003 -21.59530 -20.96412 -20.05659 -18.30854 -16.56835 -16.44989 -15.79023 -15.53349 -15.12260 -14.90661 -14.55137 -14.45143 -14.12651 -13.51138 -13.14238 -12.78189 -12.41360 -12.26723 -12.12293 -12.08004 -11.87215 -11.81293 -11.40367 -11.32993 -11.21603 -10.99870 -10.95791 -10.88108 -10.79443 -10.53623 -10.15447 -9.62087 -9.24275 -8.86336 -8.43437 -8.42290 -7.61946 -6.03879 -4.08728 3.29601 3.35984 3.39359 3.41184 3.48116 3.67907 4.13049 4.18482 4.45314 4.48506 4.58093 4.99418 5.10653 5.17849 5.22832 5.24487 5.27421 5.31580 5.40727 5.51476 5.58241 5.61977 5.65586 5.68103 5.74003 5.83592 5.88308 5.92118 5.98640 6.11179 6.16424 6.21113 6.23409 6.72069 6.98610 7.08055 7.45960 7.56092 7.92654 8.24370 8.44484 8.90888 9.12046 9.56342 11.04220 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027068 B = 0.003854 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.180883 B = 7263.852176 C = 7610.059703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.504 3.496 13 O -0.545 6.545 14 C -0.138 4.138 15 C 0.064 3.936 16 N -0.520 5.520 17 C 0.056 3.944 18 C -0.178 4.178 19 H 0.093 0.907 20 C -0.106 4.106 21 C -0.113 4.113 22 C -0.155 4.155 23 H 0.106 0.894 24 C 0.050 3.950 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.032 0.968 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.043 0.957 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.052 0.948 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.509 -20.300 -0.928 22.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.200 1.200 12 C 0.290 3.710 13 O -0.424 6.424 14 C -0.178 4.178 15 C -0.064 4.064 16 N -0.244 5.244 17 C -0.071 4.071 18 C -0.198 4.198 19 H 0.111 0.889 20 C -0.144 4.144 21 C -0.150 4.150 22 C -0.174 4.174 23 H 0.124 0.876 24 C -0.077 4.077 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.000 -20.085 -0.330 21.623 hybrid contribution 0.513 0.709 -1.742 1.949 sum -7.488 -19.377 -2.072 20.876 Atomic orbital electron populations 1.21632 0.81453 1.02477 1.00434 1.48155 1.06182 1.07880 1.71340 1.19281 0.92582 0.78175 0.97440 1.21437 1.36490 1.06248 0.92324 0.92559 1.24943 0.95365 0.96408 0.97437 1.69930 1.38394 1.14345 1.30719 0.86497 0.77703 0.78561 0.84654 1.20614 1.21044 1.19961 1.20293 0.88072 0.85162 0.77425 1.90664 1.13995 1.87362 1.50331 1.21701 0.99309 0.92929 1.03901 1.22028 0.94955 0.87062 1.02374 1.65827 1.12848 1.02686 1.43074 1.22133 0.95882 0.93877 0.95195 1.23766 0.97813 0.99456 0.98751 0.88929 1.22645 0.97988 0.94106 0.99665 1.22762 0.99110 0.98158 0.95001 1.23679 0.98082 0.96862 0.98802 0.87637 1.22564 0.96771 0.94854 0.93465 0.93707 0.90856 0.92490 0.95029 0.93855 0.92708 0.89659 0.88905 0.89755 0.93866 0.90311 0.91958 0.89041 0.91573 0.89275 0.91381 0.92953 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.36 10.24 59.85 0.61 1.97 16 2 N -0.60 -13.11 2.86 -182.95 -0.52 -13.63 16 3 C 0.24 6.54 5.16 -5.20 -0.03 6.52 16 4 C -0.53 -15.20 9.39 -34.44 -0.32 -15.52 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 8 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.50 10.71 7.67 -10.99 -0.08 10.63 16 13 O -0.55 -14.00 15.56 5.55 0.09 -13.91 16 14 C -0.14 -2.11 3.99 -27.88 -0.11 -2.22 16 15 C 0.06 0.96 4.11 -3.83 -0.02 0.95 16 16 N -0.52 -6.46 5.50 -231.25 -1.27 -7.73 16 17 C 0.06 0.62 6.62 -3.39 -0.02 0.59 16 18 C -0.18 -1.70 4.27 -105.06 -0.45 -2.15 16 19 H 0.09 0.98 7.39 -51.93 -0.38 0.59 16 20 C -0.11 -0.79 8.09 -40.11 -0.32 -1.12 16 21 C -0.11 -0.86 8.07 -41.37 -0.33 -1.20 16 22 C -0.16 -1.40 4.43 -103.05 -0.46 -1.86 16 23 H 0.11 0.93 7.60 -51.93 -0.39 0.54 16 24 C 0.05 0.55 4.97 -2.50 -0.01 0.53 16 25 H 0.04 0.63 8.14 -51.92 -0.42 0.20 16 26 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 27 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 28 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 29 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.09 1.18 5.95 -51.93 -0.31 0.87 16 32 H 0.09 1.27 8.11 -51.93 -0.42 0.85 16 33 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 34 H 0.04 0.71 8.03 -51.93 -0.42 0.30 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.72 7.66 -51.93 -0.40 0.32 16 37 H 0.09 0.61 7.61 -51.93 -0.40 0.22 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.71 7.52 -51.93 -0.39 0.31 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.05 0.61 7.41 -51.93 -0.38 0.23 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 332.75 15.07 5.01 5.01 Total: -1.00 -32.90 332.75 -9.75 -42.65 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -7.13 Total: -2.02 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -1.64 Total: -1.22 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: -1.06 Total: -47.58 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.09 Total: -13.91 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.90 -9.75 -42.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688300672.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.851 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds