Wall clock time and date at job start Mon Mar 30 2020 04:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46495 * 119.99832 * 2 1 4 4 C 1.50699 * 109.47537 * 270.00406 * 3 2 1 5 5 H 1.08002 * 119.99887 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00079 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00340 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99633 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47146 * 90.00171 * 8 6 4 10 10 H 1.48507 * 109.46821 * 209.99727 * 8 6 4 11 11 H 1.48498 * 109.47328 * 329.99490 * 8 6 4 12 12 C 1.34768 * 119.99906 * 180.02562 * 2 1 3 13 13 O 1.21288 * 120.00273 * 180.02562 * 12 2 1 14 14 C 1.50701 * 120.00286 * 359.97438 * 12 2 1 15 15 C 1.52997 * 109.47315 * 180.02562 * 14 12 2 16 16 N 1.46896 * 109.47283 * 179.97438 * 15 14 12 17 17 C 1.49660 * 111.00230 * 169.99711 * 16 15 14 18 18 C 1.50779 * 104.63625 * 247.55551 * 17 16 15 19 19 H 1.09004 * 112.33869 * 78.32030 * 18 17 16 20 20 C 1.49457 * 131.22740 * 236.69582 * 18 17 16 21 21 C 1.56696 * 80.81377 * 135.19718 * 20 18 17 22 22 C 1.49763 * 81.08480 * 314.01454 * 21 20 18 23 23 H 1.09006 * 114.09228 * 290.65346 * 22 21 20 24 24 C 1.50410 * 111.02943 * 51.80233 * 16 15 14 25 25 H 1.09009 * 109.46737 * 269.99736 * 1 2 3 26 26 H 1.09001 * 109.47154 * 29.99206 * 1 2 3 27 27 H 1.08999 * 109.47199 * 149.99959 * 1 2 3 28 28 H 1.09003 * 109.47337 * 30.00927 * 3 2 1 29 29 H 1.09005 * 109.47133 * 149.99922 * 3 2 1 30 30 H 0.96994 * 120.00225 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.46967 * 60.00232 * 14 12 2 32 32 H 1.09002 * 109.47090 * 300.00439 * 14 12 2 33 33 H 1.08999 * 109.47159 * 60.00049 * 15 14 12 34 34 H 1.09002 * 109.47154 * 300.00098 * 15 14 12 35 35 H 1.09004 * 110.39882 * 128.76894 * 17 16 15 36 36 H 1.08998 * 110.50012 * 6.39888 * 17 16 15 37 37 H 1.09002 * 114.64598 * 22.20815 * 20 18 17 38 38 H 1.08996 * 114.64463 * 248.18404 * 20 18 17 39 39 H 1.09000 * 114.59673 * 67.06311 * 21 20 18 40 40 H 1.08998 * 114.59176 * 200.91777 * 21 20 18 41 41 H 1.09005 * 110.91628 * 30.34418 * 24 16 15 42 42 H 1.09000 * 111.03727 * 266.58726 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1268 2.8776 -1.6726 7 7 3.5541 3.6177 -0.6730 8 14 3.4386 3.4166 -3.4339 9 1 2.3090 4.2598 -3.9008 10 1 4.6992 4.1991 -3.4961 11 1 3.5557 2.2194 -4.3046 12 6 2.1388 -1.1671 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0005 16 7 1.6452 -4.9073 0.0001 17 6 2.5685 -6.0599 -0.2426 18 6 2.1701 -6.5886 -1.5972 19 1 2.5644 -5.9807 -2.4116 20 6 1.7293 -7.9486 -2.0332 21 6 0.6645 -7.0852 -2.7922 22 6 0.5940 -6.4168 -1.4539 23 1 0.1492 -7.0324 -0.6719 24 6 0.6231 -4.9411 -1.1029 25 1 -0.3633 0.0000 1.0278 26 1 -0.3633 0.8901 -0.5137 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6084 2.0283 0.5140 29 1 3.1499 1.1384 0.5139 30 1 4.0315 4.4432 -0.8502 31 1 0.7584 -2.5298 -0.8903 32 1 0.7590 -2.5302 0.8897 33 1 3.0062 -3.5774 0.8895 34 1 3.0063 -3.5774 -0.8905 35 1 2.4288 -6.8258 0.5204 36 1 3.6049 -5.7225 -0.2560 37 1 1.3244 -8.5723 -1.2362 38 1 2.4357 -8.4700 -2.6790 39 1 1.0701 -6.4625 -3.5895 40 1 -0.2377 -7.6260 -3.0781 41 1 0.9497 -4.3442 -1.9545 42 1 -0.3504 -4.6063 -0.7446 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688300672.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:56 Heat of formation + Delta-G solvation = 28.044832 kcal Electronic energy + Delta-G solvation = -20489.454853 eV Core-core repulsion = 17471.685951 eV Total energy + Delta-G solvation = -3017.768902 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.26270 -40.66419 -37.15956 -36.53349 -34.76602 -32.49692 -29.89294 -29.84789 -27.69216 -27.06993 -24.94384 -24.46982 -22.91493 -21.67045 -20.94345 -19.92549 -18.72991 -17.96683 -17.19982 -16.91795 -16.48848 -16.13170 -15.85104 -15.64700 -15.32935 -14.70457 -14.38486 -14.15503 -13.78781 -13.72649 -13.51344 -13.45897 -13.21357 -12.88984 -12.83997 -12.65640 -12.54346 -12.30656 -12.23496 -12.09758 -12.06790 -11.83168 -11.72920 -11.61604 -10.66772 -10.64720 -9.93763 -9.46361 -9.41280 -8.24959 -6.40421 1.34173 1.37489 1.47683 1.80349 2.25923 2.40097 2.67167 2.93332 3.04317 3.56293 3.76840 3.80616 3.85399 3.91863 4.06649 4.24344 4.34580 4.41014 4.47850 4.59095 4.61007 4.71356 4.78740 4.82581 4.86321 4.91967 4.96115 4.96980 5.00849 5.01488 5.10332 5.18147 5.20581 5.30440 5.46115 5.53358 5.75766 5.81816 5.94759 6.03383 6.66562 6.76176 7.25216 7.45164 8.82260 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027068 B = 0.003854 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.180883 B = 7263.852176 C = 7610.059703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.545 4.545 5 H 0.052 0.948 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.970 3.030 9 H -0.261 1.261 10 H -0.280 1.280 11 H -0.274 1.274 12 C 0.494 3.506 13 O -0.602 6.602 14 C -0.117 4.117 15 C 0.074 3.926 16 N -0.520 5.520 17 C 0.052 3.948 18 C -0.185 4.185 19 H 0.076 0.924 20 C -0.096 4.096 21 C -0.108 4.108 22 C -0.146 4.146 23 H 0.116 0.884 24 C 0.044 3.956 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.024 0.976 29 H -0.004 1.004 30 H 0.268 0.732 31 H 0.109 0.891 32 H 0.121 0.879 33 H 0.066 0.934 34 H 0.018 0.982 35 H 0.092 0.908 36 H 0.047 0.953 37 H 0.106 0.894 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.041 0.959 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.818 -22.020 -2.080 24.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.342 5.342 3 C 0.136 3.864 4 C -0.584 4.584 5 H 0.071 0.929 6 C -0.193 4.193 7 N -0.568 5.568 8 Si 0.794 3.206 9 H -0.186 1.186 10 H -0.205 1.205 11 H -0.199 1.199 12 C 0.282 3.718 13 O -0.484 6.484 14 C -0.157 4.157 15 C -0.055 4.055 16 N -0.244 5.244 17 C -0.075 4.075 18 C -0.205 4.205 19 H 0.095 0.905 20 C -0.134 4.134 21 C -0.146 4.146 22 C -0.165 4.165 23 H 0.134 0.866 24 C -0.082 4.082 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.112 0.888 28 H 0.042 0.958 29 H 0.014 0.986 30 H 0.077 0.923 31 H 0.127 0.873 32 H 0.139 0.861 33 H 0.085 0.915 34 H 0.036 0.964 35 H 0.110 0.890 36 H 0.065 0.935 37 H 0.124 0.876 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.060 0.940 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.368 -21.825 -1.477 24.208 hybrid contribution 1.230 1.219 -1.325 2.181 sum -9.138 -20.606 -2.802 22.715 Atomic orbital electron populations 1.21950 0.77693 1.04021 1.02709 1.48204 1.08543 1.06363 1.71085 1.18759 0.91082 0.80477 0.96049 1.21704 1.37024 1.06629 0.92997 0.92940 1.25896 0.94818 0.96390 1.02162 1.70050 1.38845 1.14815 1.33117 0.85386 0.78199 0.78186 0.78846 1.18565 1.20525 1.19884 1.21358 0.87791 0.86749 0.75855 1.90632 1.16787 1.88282 1.52719 1.21605 0.98838 0.89011 1.06201 1.21812 0.94724 0.88616 1.00393 1.65870 1.12950 1.01544 1.44004 1.22180 0.94903 0.93675 0.96692 1.23756 0.98383 1.01065 0.97253 0.90536 1.22681 0.97754 0.93089 0.99889 1.22743 0.99803 0.97900 0.94160 1.23738 0.97080 0.95647 0.99999 0.86648 1.22659 0.96590 0.96299 0.92669 0.90995 0.91522 0.88758 0.95761 0.98591 0.92325 0.87264 0.86087 0.91548 0.96390 0.88992 0.93484 0.87595 0.90946 0.89874 0.89726 0.94041 0.88653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.35 10.24 127.77 1.31 3.66 16 2 N -0.61 -26.68 2.86 -851.12 -2.43 -29.11 16 3 C 0.26 14.35 5.16 85.63 0.44 14.79 16 4 C -0.54 -32.19 9.39 25.60 0.24 -31.95 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 6 C 0.01 0.37 5.46 84.66 0.46 0.83 16 7 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 8 Si 0.97 45.53 29.54 68.60 2.03 47.55 16 9 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 12 C 0.49 21.25 7.67 87.66 0.67 21.92 16 13 O -0.60 -32.50 15.56 -3.05 -0.05 -32.54 16 14 C -0.12 -3.40 3.99 29.85 0.12 -3.28 16 15 C 0.07 2.21 4.11 86.30 0.35 2.57 16 16 N -0.52 -12.23 5.50 -885.54 -4.87 -17.09 16 17 C 0.05 1.11 6.62 85.04 0.56 1.67 16 18 C -0.19 -3.27 4.27 -20.15 -0.09 -3.36 16 19 H 0.08 1.60 7.39 -2.39 -0.02 1.58 16 20 C -0.10 -1.18 8.09 21.93 0.18 -1.00 16 21 C -0.11 -1.37 8.07 21.11 0.17 -1.20 16 22 C -0.15 -2.24 4.43 -18.85 -0.08 -2.33 16 23 H 0.12 1.61 7.60 -2.38 -0.02 1.60 16 24 C 0.04 0.86 4.97 85.19 0.42 1.28 16 25 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 26 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 27 H 0.09 2.13 6.44 -2.39 -0.02 2.11 16 28 H 0.02 1.36 8.07 -2.39 -0.02 1.34 16 29 H 0.00 -0.26 7.42 -2.38 -0.02 -0.28 16 30 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 31 H 0.11 2.71 5.95 -2.39 -0.01 2.69 16 32 H 0.12 2.92 8.11 -2.39 -0.02 2.90 16 33 H 0.07 2.21 8.10 -2.39 -0.02 2.19 16 34 H 0.02 0.62 8.03 -2.39 -0.02 0.60 16 35 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.05 1.12 7.66 -2.39 -0.02 1.10 16 37 H 0.11 1.04 7.61 -2.39 -0.02 1.02 16 38 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 1.17 7.52 -2.39 -0.02 1.15 16 40 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.04 0.91 7.41 -2.38 -0.02 0.89 16 42 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -74.72 332.75 0.71 -74.01 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.98 Total: 10.45 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 4.76 Total: 3.61 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -7.01 Total: -103.08 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.05 Total: -32.54 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -74.72 0.71 -74.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688300672.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.059 kcal (2) G-P(sol) polarization free energy of solvation -74.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds