Wall clock time and date at job start Mon Mar 30 2020 04:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46508 * 119.99411 * 2 1 4 4 C 1.50702 * 109.46784 * 269.99968 * 3 2 1 5 5 H 1.07999 * 120.00035 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99677 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99884 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99819 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47027 * 60.00208 * 8 6 4 10 10 H 1.48501 * 109.47156 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47585 * 300.00377 * 8 6 4 12 12 C 1.34776 * 120.00413 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00126 * 179.97438 * 12 2 1 14 14 C 1.50697 * 119.99809 * 359.97438 * 12 2 1 15 15 N 1.46897 * 109.47152 * 179.97438 * 14 12 2 16 16 C 1.47965 * 111.00070 * 169.99987 * 15 14 12 17 17 C 1.53939 * 86.17880 * 137.58385 * 16 15 14 18 18 C 1.53006 * 113.73193 * 221.81640 * 17 16 15 19 19 C 1.53001 * 109.47155 * 183.10148 * 18 17 16 20 20 C 1.52995 * 117.49915 * 243.62150 * 19 18 17 21 21 C 1.52992 * 117.49792 * 174.99812 * 19 18 17 22 22 C 1.47960 * 111.00044 * 269.35977 * 15 14 12 23 23 H 1.09006 * 109.47143 * 269.99802 * 1 2 3 24 24 H 1.08998 * 109.47918 * 30.00174 * 1 2 3 25 25 H 1.09000 * 109.47096 * 150.00233 * 1 2 3 26 26 H 1.08991 * 109.47444 * 30.00050 * 3 2 1 27 27 H 1.08999 * 109.46616 * 150.00529 * 3 2 1 28 28 H 0.97003 * 119.99596 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.47244 * 59.99972 * 14 12 2 30 30 H 1.08999 * 109.47240 * 300.00157 * 14 12 2 31 31 H 1.08999 * 113.75581 * 23.26965 * 16 15 14 32 32 H 1.08999 * 113.75871 * 251.90170 * 16 15 14 33 33 H 1.09002 * 113.73278 * 90.63886 * 17 16 15 34 34 H 1.08998 * 109.46660 * 303.09766 * 18 17 16 35 35 H 1.08998 * 109.46921 * 63.10037 * 18 17 16 36 36 H 1.09009 * 115.54722 * 29.32842 * 19 18 17 37 37 H 1.09000 * 117.49821 * 0.02562 * 20 19 18 38 38 H 1.09006 * 117.49826 * 145.02004 * 20 19 18 39 39 H 1.09003 * 117.49972 * 214.97814 * 21 19 18 40 40 H 1.08997 * 117.50145 * 359.97438 * 21 19 18 41 41 H 1.09001 * 113.75748 * 108.09640 * 22 15 14 42 42 H 1.09002 * 113.76361 * 336.73597 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.4485 1.7039 -1.4209 5 1 2.0972 1.0962 -2.2417 6 6 3.1266 2.8777 -1.6728 7 7 3.5547 3.6173 -0.6732 8 14 3.4385 3.4165 -3.4340 9 1 2.1411 3.5943 -4.1343 10 1 4.1808 4.7027 -3.4340 11 1 4.2409 2.3813 -4.1337 12 6 2.1389 -1.1671 0.0005 13 8 3.3517 -1.1671 0.0001 14 6 1.3855 -2.4722 0.0017 15 7 2.3401 -3.5887 0.0014 16 6 1.6509 -4.8757 0.2424 17 6 2.5533 -5.4484 -0.8655 18 6 1.8252 -6.3891 -1.8279 19 6 2.8239 -6.9593 -2.8370 20 6 2.6209 -6.6021 -4.3107 21 6 2.3121 -8.0169 -3.8169 22 6 2.6719 -4.0024 -1.3799 23 1 -0.3634 0.0000 1.0277 24 1 -0.3635 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6083 2.0284 0.5138 27 1 3.1498 1.1385 0.5138 28 1 4.0315 4.4433 -0.8505 29 1 0.7585 -2.5306 -0.8880 30 1 0.7592 -2.5294 0.8919 31 1 0.5923 -4.8622 -0.0167 32 1 1.8434 -5.2991 1.2282 33 1 3.4923 -5.8614 -0.4968 34 1 1.3716 -7.2048 -1.2649 35 1 1.0486 -5.8371 -2.3574 36 1 3.8488 -7.0586 -2.4793 37 1 1.7762 -5.9605 -4.5614 38 1 3.5125 -6.4662 -4.9230 39 1 3.0003 -8.8118 -4.1043 40 1 1.2640 -8.3068 -3.7425 41 1 3.6801 -3.7280 -1.6902 42 1 1.9119 -3.7335 -2.1135 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699601365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:34 Heat of formation + Delta-G solvation = 24.306731 kcal Electronic energy + Delta-G solvation = -20218.556920 eV Core-core repulsion = 17200.625922 eV Total energy + Delta-G solvation = -3017.930999 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.24685 -38.46607 -37.33953 -34.66172 -32.64046 -31.78351 -28.75661 -27.30716 -26.06755 -25.65790 -23.82409 -22.56419 -22.04645 -20.63642 -19.66443 -18.34222 -16.52541 -16.37470 -16.13372 -15.63791 -15.32404 -15.07337 -14.62200 -14.33953 -14.01095 -13.81534 -12.98582 -12.83152 -12.56415 -12.18182 -12.15108 -11.88552 -11.76890 -11.72563 -11.57799 -11.26279 -11.16729 -10.91093 -10.74617 -10.68827 -10.52668 -10.22932 -10.12145 -9.99574 -9.60392 -8.95883 -8.43321 -8.40265 -7.56180 -6.00936 -4.05743 3.33201 3.37714 3.40155 3.54768 3.58170 3.74350 4.23272 4.30802 4.46084 4.49901 4.70436 4.77917 4.91351 5.11695 5.16434 5.29986 5.31280 5.32476 5.39486 5.41982 5.47693 5.54023 5.56746 5.67398 5.70351 5.76074 5.78626 5.90134 5.94882 5.98958 6.08850 6.21838 6.28196 6.45401 6.98881 7.18862 7.50343 7.61291 7.96048 8.27775 8.50429 8.94678 9.22260 9.59318 11.07080 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020393 B = 0.004122 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.716428 B = 6790.764310 C = 7675.571670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.608 5.608 3 C 0.247 3.753 4 C -0.526 4.526 5 H 0.055 0.945 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.506 3.494 13 O -0.521 6.521 14 C 0.003 3.997 15 N -0.456 5.456 16 C 0.002 3.998 17 C -0.111 4.111 18 C -0.080 4.080 19 C -0.148 4.148 20 C -0.180 4.180 21 C -0.186 4.186 22 C 0.015 3.985 23 H 0.043 0.957 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.031 0.969 27 H 0.043 0.957 28 H 0.264 0.736 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.034 -20.318 -2.043 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.342 5.342 3 C 0.128 3.872 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.291 3.709 13 O -0.396 6.396 14 C -0.129 4.129 15 N -0.178 5.178 16 C -0.127 4.127 17 C -0.129 4.129 18 C -0.118 4.118 19 C -0.166 4.166 20 C -0.217 4.217 21 C -0.223 4.223 22 C -0.113 4.113 23 H 0.061 0.939 24 H 0.092 0.908 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.123 0.877 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.770 -19.864 -1.537 21.042 hybrid contribution -0.692 0.365 -1.557 1.743 sum -7.462 -19.499 -3.094 21.106 Atomic orbital electron populations 1.21601 0.81765 1.02310 1.00251 1.48178 1.05968 1.07844 1.72246 1.19248 0.92560 0.78075 0.97354 1.21405 1.36515 1.06229 0.92340 0.92649 1.24941 0.95378 0.96413 0.97402 1.69927 1.38359 1.14375 1.30765 0.86563 0.78321 0.77827 0.84724 1.20297 1.21142 1.20192 1.20097 0.88261 0.84535 0.77978 1.90665 1.13634 1.86825 1.48510 1.22651 0.95143 0.92791 1.02315 1.68377 1.29988 1.00362 1.19114 1.24040 0.96986 0.91553 1.00120 1.22995 0.99659 0.94805 0.95486 1.21199 0.96588 0.98290 0.95735 1.22335 1.00438 1.02750 0.91081 1.23026 1.03387 0.98217 0.97075 1.22960 1.01873 0.92568 1.04854 1.24034 1.03026 0.93430 0.90844 0.93860 0.90823 0.92870 0.95115 0.93870 0.92677 0.91757 0.88910 0.91515 0.89383 0.88223 0.91253 0.91799 0.87699 0.88861 0.88918 0.89054 0.89020 0.89100 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.38 10.24 59.85 0.61 1.99 16 2 N -0.61 -13.41 2.86 -182.95 -0.52 -13.93 16 3 C 0.25 6.68 5.16 -5.19 -0.03 6.65 16 4 C -0.53 -15.30 9.39 -34.44 -0.32 -15.62 16 5 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -27.15 13.29 55.43 0.74 -26.42 16 8 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 12 C 0.51 11.09 7.72 -10.99 -0.08 11.00 16 13 O -0.52 -13.94 16.01 5.56 0.09 -13.85 16 14 C 0.00 0.05 3.83 -4.98 -0.02 0.03 16 15 N -0.46 -7.06 5.65 -239.72 -1.35 -8.41 16 16 C 0.00 0.02 7.52 -2.76 -0.02 0.00 16 17 C -0.11 -1.16 3.80 -89.68 -0.34 -1.50 16 18 C -0.08 -0.69 5.34 -26.73 -0.14 -0.83 16 19 C -0.15 -1.28 5.74 -90.63 -0.52 -1.80 16 20 C -0.18 -1.56 10.18 -26.74 -0.27 -1.83 16 21 C -0.19 -1.43 10.25 -26.74 -0.27 -1.70 16 22 C 0.02 0.21 7.51 -2.77 -0.02 0.19 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 1.22 8.07 -51.93 -0.42 0.81 16 25 H 0.05 0.70 6.44 -51.93 -0.33 0.36 16 26 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 27 H 0.04 1.32 7.42 -51.93 -0.39 0.94 16 28 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.06 0.90 6.64 -51.93 -0.34 0.55 16 30 H 0.09 1.25 8.05 -51.93 -0.42 0.83 16 31 H 0.07 0.62 7.88 -51.93 -0.41 0.21 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.10 1.06 8.07 -51.93 -0.42 0.64 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.55 7.61 -51.93 -0.40 0.16 16 36 H 0.10 0.92 8.02 -51.92 -0.42 0.50 16 37 H 0.09 0.81 8.03 -51.93 -0.42 0.39 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.07 0.88 7.26 -51.93 -0.38 0.50 16 LS Contribution 345.47 15.07 5.21 5.21 Total: -1.00 -34.24 345.47 -9.65 -43.90 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -7.26 Total: -1.94 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -1.53 Total: -1.74 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: -1.14 Total: -48.76 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.09 Total: -13.85 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.24 -9.65 -43.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699601365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.205 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds