Wall clock time and date at job start Mon Mar 30 2020 04:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46508 * 119.99411 * 2 1 4 4 C 1.50702 * 109.46784 * 269.99968 * 3 2 1 5 5 H 1.07999 * 120.00035 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99677 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99884 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99819 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47027 * 60.00208 * 8 6 4 10 10 H 1.48501 * 109.47156 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47585 * 300.00377 * 8 6 4 12 12 C 1.34776 * 120.00413 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00126 * 179.97438 * 12 2 1 14 14 C 1.50697 * 119.99809 * 359.97438 * 12 2 1 15 15 N 1.46897 * 109.47152 * 179.97438 * 14 12 2 16 16 C 1.47965 * 111.00070 * 169.99987 * 15 14 12 17 17 C 1.53939 * 86.17880 * 137.58385 * 16 15 14 18 18 C 1.53006 * 113.73193 * 221.81640 * 17 16 15 19 19 C 1.53001 * 109.47155 * 183.10148 * 18 17 16 20 20 C 1.52995 * 117.49915 * 243.62150 * 19 18 17 21 21 C 1.52992 * 117.49792 * 174.99812 * 19 18 17 22 22 C 1.47960 * 111.00044 * 269.35977 * 15 14 12 23 23 H 1.09006 * 109.47143 * 269.99802 * 1 2 3 24 24 H 1.08998 * 109.47918 * 30.00174 * 1 2 3 25 25 H 1.09000 * 109.47096 * 150.00233 * 1 2 3 26 26 H 1.08991 * 109.47444 * 30.00050 * 3 2 1 27 27 H 1.08999 * 109.46616 * 150.00529 * 3 2 1 28 28 H 0.97003 * 119.99596 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.47244 * 59.99972 * 14 12 2 30 30 H 1.08999 * 109.47240 * 300.00157 * 14 12 2 31 31 H 1.08999 * 113.75581 * 23.26965 * 16 15 14 32 32 H 1.08999 * 113.75871 * 251.90170 * 16 15 14 33 33 H 1.09002 * 113.73278 * 90.63886 * 17 16 15 34 34 H 1.08998 * 109.46660 * 303.09766 * 18 17 16 35 35 H 1.08998 * 109.46921 * 63.10037 * 18 17 16 36 36 H 1.09009 * 115.54722 * 29.32842 * 19 18 17 37 37 H 1.09000 * 117.49821 * 0.02562 * 20 19 18 38 38 H 1.09006 * 117.49826 * 145.02004 * 20 19 18 39 39 H 1.09003 * 117.49972 * 214.97814 * 21 19 18 40 40 H 1.08997 * 117.50145 * 359.97438 * 21 19 18 41 41 H 1.09001 * 113.75748 * 108.09640 * 22 15 14 42 42 H 1.09002 * 113.76361 * 336.73597 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.4485 1.7039 -1.4209 5 1 2.0972 1.0962 -2.2417 6 6 3.1266 2.8777 -1.6728 7 7 3.5547 3.6173 -0.6732 8 14 3.4385 3.4165 -3.4340 9 1 2.1411 3.5943 -4.1343 10 1 4.1808 4.7027 -3.4340 11 1 4.2409 2.3813 -4.1337 12 6 2.1389 -1.1671 0.0005 13 8 3.3517 -1.1671 0.0001 14 6 1.3855 -2.4722 0.0017 15 7 2.3401 -3.5887 0.0014 16 6 1.6509 -4.8757 0.2424 17 6 2.5533 -5.4484 -0.8655 18 6 1.8252 -6.3891 -1.8279 19 6 2.8239 -6.9593 -2.8370 20 6 2.6209 -6.6021 -4.3107 21 6 2.3121 -8.0169 -3.8169 22 6 2.6719 -4.0024 -1.3799 23 1 -0.3634 0.0000 1.0277 24 1 -0.3635 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6083 2.0284 0.5138 27 1 3.1498 1.1385 0.5138 28 1 4.0315 4.4433 -0.8505 29 1 0.7585 -2.5306 -0.8880 30 1 0.7592 -2.5294 0.8919 31 1 0.5923 -4.8622 -0.0167 32 1 1.8434 -5.2991 1.2282 33 1 3.4923 -5.8614 -0.4968 34 1 1.3716 -7.2048 -1.2649 35 1 1.0486 -5.8371 -2.3574 36 1 3.8488 -7.0586 -2.4793 37 1 1.7762 -5.9605 -4.5614 38 1 3.5125 -6.4662 -4.9230 39 1 3.0003 -8.8118 -4.1043 40 1 1.2640 -8.3068 -3.7425 41 1 3.6801 -3.7280 -1.6902 42 1 1.9119 -3.7335 -2.1135 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699601365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:33 Heat of formation + Delta-G solvation = 0.830291 kcal Electronic energy + Delta-G solvation = -20219.574935 eV Core-core repulsion = 17200.625922 eV Total energy + Delta-G solvation = -3018.949013 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.37024 -40.00158 -38.07553 -36.51246 -34.75740 -32.88340 -30.31097 -28.75776 -27.24090 -27.03012 -25.41183 -23.64705 -23.15157 -21.34355 -20.58331 -19.94926 -18.70821 -17.89800 -17.28901 -16.87228 -16.66312 -16.33810 -16.17857 -15.35727 -15.29399 -14.98886 -14.34064 -14.27481 -13.79542 -13.64849 -13.47607 -13.43111 -13.16497 -12.85506 -12.79518 -12.57931 -12.35705 -12.33688 -12.23760 -12.19913 -11.74983 -11.67687 -11.54107 -10.95009 -10.67609 -10.65838 -10.57343 -9.61690 -9.39947 -8.23709 -6.39370 1.34372 1.39343 1.46711 1.88518 2.26603 2.41254 2.94957 3.05093 3.08971 3.47813 3.61393 3.82802 4.02466 4.10863 4.14557 4.22773 4.23745 4.37091 4.46916 4.49772 4.51882 4.71475 4.72216 4.79984 4.82922 4.85961 4.93885 4.97984 5.00814 5.10877 5.12909 5.21412 5.29744 5.36540 5.43352 5.49171 5.54860 5.83695 6.04457 6.07035 6.68843 6.82438 7.27320 7.55141 8.83234 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020393 B = 0.004122 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.716428 B = 6790.764310 C = 7675.571670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.616 5.616 3 C 0.260 3.740 4 C -0.544 4.544 5 H 0.052 0.948 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.969 3.031 9 H -0.258 1.258 10 H -0.277 1.277 11 H -0.279 1.279 12 C 0.493 3.507 13 O -0.585 6.585 14 C 0.020 3.980 15 N -0.497 5.497 16 C 0.013 3.987 17 C -0.094 4.094 18 C -0.071 4.071 19 C -0.158 4.158 20 C -0.194 4.194 21 C -0.173 4.173 22 C 0.008 3.992 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.093 0.907 26 H 0.023 0.977 27 H -0.007 1.007 28 H 0.268 0.732 29 H 0.091 0.909 30 H 0.124 0.876 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.055 0.945 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.538 -22.175 -3.006 24.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.349 5.349 3 C 0.139 3.861 4 C -0.583 4.583 5 H 0.071 0.929 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.182 1.182 10 H -0.202 1.202 11 H -0.204 1.204 12 C 0.281 3.719 13 O -0.465 6.465 14 C -0.112 4.112 15 N -0.220 5.220 16 C -0.115 4.115 17 C -0.113 4.113 18 C -0.109 4.109 19 C -0.176 4.176 20 C -0.231 4.231 21 C -0.210 4.210 22 C -0.121 4.121 23 H 0.089 0.911 24 H 0.084 0.916 25 H 0.111 0.889 26 H 0.041 0.959 27 H 0.011 0.989 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.142 0.858 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.073 0.927 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.338 -21.745 -2.493 23.796 hybrid contribution 0.113 0.939 -1.202 1.530 sum -9.225 -20.805 -3.695 23.057 Atomic orbital electron populations 1.21920 0.77860 1.03920 1.02575 1.48234 1.08420 1.06314 1.71901 1.18706 0.90952 0.80497 0.95962 1.21681 1.37018 1.06594 0.93007 0.92944 1.25908 0.94818 0.96399 1.02194 1.70054 1.38833 1.14829 1.33203 0.85445 0.78933 0.77360 0.78933 1.18216 1.20163 1.20438 1.21343 0.88018 0.86364 0.76160 1.90625 1.16708 1.87900 1.51273 1.22577 0.94595 0.89122 1.04871 1.68317 1.31614 1.02065 1.20022 1.24131 0.98159 0.88477 1.00689 1.22854 0.99787 0.93154 0.95520 1.21139 0.96213 0.98262 0.95258 1.22366 1.00421 1.03631 0.91153 1.23076 1.03361 0.99375 0.97257 1.23028 1.02614 0.92049 1.03316 1.24044 1.01312 0.96055 0.90698 0.91098 0.91607 0.88879 0.95895 0.98916 0.92345 0.89091 0.85817 0.88758 0.88450 0.88858 0.89371 0.91374 0.88364 0.88879 0.89384 0.88428 0.87916 0.92675 0.90689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.38 10.24 127.77 1.31 3.69 16 2 N -0.62 -27.26 2.86 -851.13 -2.43 -29.69 16 3 C 0.26 14.70 5.16 85.63 0.44 15.14 16 4 C -0.54 -32.48 9.39 25.60 0.24 -32.24 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.34 5.46 84.66 0.46 0.80 16 7 N -0.93 -57.84 13.29 21.45 0.28 -57.56 16 8 Si 0.97 45.88 29.54 68.60 2.03 47.91 16 9 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 12 C 0.49 21.78 7.72 87.66 0.68 22.45 16 13 O -0.59 -32.89 16.01 -3.03 -0.05 -32.94 16 14 C 0.02 0.57 3.83 85.56 0.33 0.90 16 15 N -0.50 -14.73 5.65 -912.35 -5.15 -19.88 16 16 C 0.01 0.25 7.52 86.41 0.65 0.90 16 17 C -0.09 -1.80 3.80 -10.14 -0.04 -1.84 16 18 C -0.07 -1.01 5.34 30.60 0.16 -0.85 16 19 C -0.16 -2.46 5.74 -10.80 -0.06 -2.52 16 20 C -0.19 -3.13 10.18 30.59 0.31 -2.82 16 21 C -0.17 -2.28 10.25 30.59 0.31 -1.97 16 22 C 0.01 0.21 7.51 86.41 0.65 0.86 16 23 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 24 H 0.07 2.08 8.07 -2.39 -0.02 2.06 16 25 H 0.09 2.05 6.44 -2.39 -0.02 2.04 16 26 H 0.02 1.30 8.07 -2.39 -0.02 1.29 16 27 H -0.01 -0.48 7.42 -2.39 -0.02 -0.50 16 28 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 29 H 0.09 2.17 6.64 -2.39 -0.02 2.16 16 30 H 0.12 2.83 8.05 -2.39 -0.02 2.81 16 31 H 0.09 1.27 7.88 -2.39 -0.02 1.25 16 32 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.09 1.90 8.07 -2.39 -0.02 1.88 16 34 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 0.95 7.61 -2.39 -0.02 0.93 16 36 H 0.10 1.65 8.02 -2.38 -0.02 1.63 16 37 H 0.09 1.49 8.03 -2.39 -0.02 1.47 16 38 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.08 1.87 7.26 -2.39 -0.02 1.86 16 Total: -1.00 -79.19 345.47 1.09 -78.09 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.97 Total: 11.56 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 5.44 Total: 2.51 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -7.30 Total: -107.13 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -0.05 Total: -32.94 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -79.19 1.09 -78.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699601365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.925 kcal (2) G-P(sol) polarization free energy of solvation -79.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds