Wall clock time and date at job start Mon Mar 30 2020 04:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.49707 * 110.99801 * 2 1 4 4 C 1.50120 * 104.74202 * 245.78985 * 3 2 1 5 5 H 1.09002 * 110.05487 * 80.32135 * 4 3 2 6 6 C 1.50741 * 126.19721 * 216.34027 * 4 3 2 7 7 N 1.50187 * 102.14300 * 154.76579 * 6 4 3 8 8 C 1.46898 * 111.00180 * 213.03356 * 7 6 4 9 9 C 1.53004 * 109.47178 * 289.68784 * 8 7 6 10 10 C 1.52997 * 109.46982 * 179.97438 * 9 8 7 11 11 C 1.53003 * 109.46867 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47038 * 180.02562 * 11 10 9 13 13 H 1.08006 * 120.00159 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00120 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00089 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99938 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 269.99556 * 16 14 12 18 18 H 1.48503 * 109.47261 * 149.99737 * 16 14 12 19 19 H 1.48500 * 109.47454 * 29.99730 * 16 14 12 20 20 C 1.49701 * 107.64862 * 334.70169 * 7 6 4 21 21 C 1.50135 * 104.74080 * 352.55017 * 20 7 6 22 22 C 1.53003 * 110.07131 * 279.64701 * 21 20 7 23 23 C 1.50762 * 126.47448 * 143.75478 * 21 20 7 24 24 H 1.08996 * 109.47475 * 60.12400 * 1 2 3 25 25 H 1.09003 * 109.46541 * 180.12410 * 1 2 3 26 26 H 1.08995 * 109.46895 * 300.12058 * 1 2 3 27 27 H 1.09007 * 110.38173 * 126.97020 * 3 2 1 28 28 H 1.09001 * 110.38476 * 4.60629 * 3 2 1 29 29 H 1.09001 * 110.86610 * 36.60558 * 6 4 3 30 30 H 1.09000 * 110.86638 * 272.93257 * 6 4 3 31 31 H 1.08996 * 109.47442 * 169.68529 * 8 7 6 32 32 H 1.09004 * 109.46841 * 49.68267 * 8 7 6 33 33 H 1.08996 * 109.47142 * 59.99561 * 9 8 7 34 34 H 1.09004 * 109.46812 * 299.99501 * 9 8 7 35 35 H 1.08996 * 109.47435 * 59.99869 * 10 9 8 36 36 H 1.08996 * 109.47029 * 299.99747 * 10 9 8 37 37 H 1.09003 * 109.46825 * 60.00325 * 11 10 9 38 38 H 1.08996 * 109.47396 * 299.99898 * 11 10 9 39 39 H 0.96998 * 119.99255 * 0.02562 * 15 14 12 40 40 H 1.09001 * 110.38114 * 111.36671 * 20 7 6 41 41 H 1.09000 * 110.37787 * 233.62318 * 20 7 6 42 42 H 1.08998 * 109.46698 * 58.98175 * 22 21 20 43 43 H 1.08995 * 109.47548 * 178.98567 * 22 21 20 44 44 H 1.09010 * 109.46567 * 298.98983 * 22 21 20 45 45 H 1.09002 * 110.86348 * 323.30371 * 23 21 20 46 46 H 1.08995 * 110.86822 * 86.97744 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0055 1.3976 0.0000 4 6 2.6982 1.5410 -1.3241 5 1 1.9683 1.7446 -2.1077 6 6 3.9669 2.3117 -1.5863 7 7 4.5111 1.6198 -2.8031 8 6 5.9800 1.6193 -2.7956 9 6 6.4918 3.0402 -3.0403 10 6 8.0218 3.0397 -3.0319 11 6 8.5336 4.4606 -3.2772 12 6 10.0406 4.4600 -3.2695 13 1 10.5795 3.5385 -3.1056 14 6 10.7315 5.6361 -3.4707 15 7 10.0754 6.7584 -3.6698 16 14 12.5994 5.6353 -3.4619 17 1 13.0881 5.8748 -2.0801 18 1 13.0992 6.7097 -4.3569 19 1 13.0962 4.3206 -3.9416 20 6 3.9740 0.2224 -2.8090 21 6 3.2743 0.0766 -1.4887 22 6 4.2925 -0.2129 -0.3839 23 6 2.0051 -0.6940 -1.2273 24 1 -0.3634 0.5119 -0.8910 25 1 -0.3632 -1.0277 0.0022 26 1 -0.3633 0.5157 0.8889 27 1 2.7152 1.5319 0.8164 28 1 1.1907 2.1171 0.0821 29 1 4.6566 2.2211 -0.7471 30 1 3.7484 3.3580 -1.7996 31 1 6.3472 0.9603 -3.5824 32 1 6.3383 1.2655 -1.8288 33 1 6.1247 3.6992 -2.2535 34 1 6.1336 3.3940 -4.0071 35 1 8.3893 2.3807 -3.8184 36 1 8.3796 2.6862 -2.0650 37 1 8.1661 5.1199 -2.4908 38 1 8.1757 4.8138 -4.2442 39 1 9.1054 6.7587 -3.6747 40 1 3.2685 0.0903 -3.6293 41 1 4.7889 -0.4970 -2.8903 42 1 5.0160 0.6007 -0.3344 43 1 3.7765 -0.2991 0.5723 44 1 4.8104 -1.1468 -0.6029 45 1 1.3160 -0.6032 -2.0669 46 1 2.2232 -1.7404 -1.0140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702416150.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:28 Heat of formation + Delta-G solvation = 15.794956 kcal Electronic energy + Delta-G solvation = -20815.511915 eV Core-core repulsion = 17933.044913 eV Total energy + Delta-G solvation = -2882.467002 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.46734 -37.25374 -34.94209 -33.10539 -31.61309 -30.98172 -28.55163 -27.41855 -26.76967 -25.92343 -23.84955 -22.31589 -20.85337 -20.42530 -20.21496 -19.17146 -16.69233 -16.47681 -15.86375 -15.58293 -15.22640 -14.80089 -14.18082 -14.13708 -13.69769 -13.53672 -13.10310 -12.91955 -12.72236 -12.53961 -12.32588 -12.19266 -11.97798 -11.86556 -11.82805 -11.38385 -11.26972 -10.94589 -10.86853 -10.69339 -10.56029 -10.53679 -10.15561 -10.09091 -9.72100 -9.58482 -8.78159 -8.46442 -8.32438 -8.27005 -6.31091 -3.99367 3.45771 3.49849 3.52822 3.60161 3.65593 3.80550 4.39138 4.58673 4.75303 4.86292 4.88062 4.91603 5.05998 5.10700 5.17744 5.23185 5.31966 5.36608 5.45671 5.46294 5.47830 5.50075 5.51222 5.64174 5.73112 5.78891 5.83002 5.88491 5.93053 5.97158 6.08722 6.15817 6.21263 6.38714 6.42922 6.63135 6.70113 6.83164 6.86918 6.97647 7.14574 7.49282 7.62830 8.29222 8.52786 8.94824 9.73140 11.09777 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.048849 B = 0.002960 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.062819 B = 9457.961062 C = 9592.553437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.526 5.526 3 C 0.058 3.942 4 C -0.136 4.136 5 H 0.079 0.921 6 C 0.059 3.941 7 N -0.522 5.522 8 C 0.050 3.950 9 C -0.112 4.112 10 C -0.102 4.102 11 C 0.008 3.992 12 C -0.601 4.601 13 H 0.047 0.953 14 C 0.012 3.988 15 N -0.916 5.916 16 Si 1.071 2.929 17 H -0.288 1.288 18 H -0.284 1.284 19 H -0.289 1.289 20 C 0.064 3.936 21 C -0.113 4.113 22 C -0.145 4.145 23 C 0.065 3.935 24 H 0.027 0.973 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.034 0.966 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.045 0.955 37 H 0.005 0.995 38 H 0.006 0.994 39 H 0.269 0.731 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.326 -15.346 6.402 25.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.250 5.250 3 C -0.070 4.070 4 C -0.156 4.156 5 H 0.097 0.903 6 C -0.068 4.068 7 N -0.245 5.245 8 C -0.078 4.078 9 C -0.150 4.150 10 C -0.140 4.140 11 C -0.029 4.029 12 C -0.639 4.639 13 H 0.066 0.934 14 C -0.191 4.191 15 N -0.552 5.552 16 Si 0.900 3.100 17 H -0.215 1.215 18 H -0.210 1.210 19 H -0.215 1.215 20 C -0.064 4.064 21 C -0.115 4.115 22 C -0.202 4.202 23 C -0.063 4.063 24 H 0.045 0.955 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.023 0.977 38 H 0.025 0.975 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.995 -14.381 6.238 23.865 hybrid contribution -1.422 -0.991 0.132 1.738 sum -19.417 -15.372 6.369 25.571 Atomic orbital electron populations 1.22539 0.88068 1.02018 1.00652 1.65518 1.07913 1.13860 1.37718 1.22081 0.98899 0.89258 0.96759 1.22600 0.97898 0.96519 0.98590 0.90262 1.22364 0.93952 0.98502 0.92013 1.65275 1.08708 1.12676 1.37883 1.22443 0.86136 0.99187 1.00053 1.21628 0.97118 0.94402 1.01868 1.21465 0.92033 1.00322 1.00196 1.19214 0.96529 0.91412 0.95712 1.22123 0.91714 0.96551 1.53542 0.93419 1.25859 1.07010 0.92382 0.93863 1.70745 1.10163 1.27962 1.46369 0.83520 0.74384 0.75360 0.76771 1.21502 1.20999 1.21526 1.22071 0.98684 0.90461 0.95193 1.21969 0.95855 0.96337 0.97333 1.22041 0.98102 1.01407 0.98605 1.22410 0.94175 0.98380 0.91287 0.95487 0.91352 0.91306 0.89919 0.91930 0.92278 0.89933 0.91038 0.94803 0.92771 0.91822 0.93341 0.93576 0.97683 0.97539 0.92077 0.90571 0.91732 0.92313 0.90838 0.92679 0.92865 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.25 60.07 0.56 0.67 16 2 N -0.53 -4.67 4.91 -240.03 -1.18 -5.84 16 3 C 0.06 0.52 5.99 -3.69 -0.02 0.50 16 4 C -0.14 -1.36 2.74 -90.31 -0.25 -1.61 16 5 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 6 C 0.06 0.70 5.22 -3.11 -0.02 0.69 16 7 N -0.52 -6.77 5.28 -232.39 -1.23 -8.00 16 8 C 0.05 0.72 4.63 -3.82 -0.02 0.70 16 9 C -0.11 -1.97 5.28 -26.73 -0.14 -2.11 16 10 C -0.10 -2.17 5.15 -26.73 -0.14 -2.31 16 11 C 0.01 0.22 4.28 -27.88 -0.12 0.10 16 12 C -0.60 -17.73 9.11 -34.44 -0.31 -18.05 16 13 H 0.05 1.38 7.74 -52.48 -0.41 0.98 16 14 C 0.01 0.36 5.46 -17.82 -0.10 0.27 16 15 N -0.92 -28.89 13.65 55.43 0.76 -28.13 16 16 Si 1.07 25.98 29.90 -169.99 -5.08 20.90 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.06 0.69 6.12 -3.68 -0.02 0.67 16 21 C -0.11 -1.09 1.29 -154.18 -0.20 -1.29 16 22 C -0.14 -1.45 7.85 37.16 0.29 -1.16 16 23 C 0.06 0.56 5.97 -2.72 -0.02 0.54 16 24 H 0.03 0.19 8.11 -51.93 -0.42 -0.23 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.78 7.44 -51.92 -0.39 0.39 16 28 H 0.06 0.52 7.65 -51.93 -0.40 0.12 16 29 H 0.06 0.73 5.81 -51.93 -0.30 0.42 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.02 7.98 -51.93 -0.41 0.61 16 32 H 0.03 0.48 6.79 -51.93 -0.35 0.13 16 33 H 0.05 0.95 7.53 -51.93 -0.39 0.56 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.00 0.14 8.01 -51.93 -0.42 -0.28 16 38 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 39 H 0.27 8.45 7.22 -40.82 -0.29 8.16 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.68 7.42 -51.93 -0.39 0.30 16 42 H 0.06 0.66 4.65 -51.93 -0.24 0.42 16 43 H 0.07 0.75 6.42 -51.93 -0.33 0.41 16 44 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 45 H 0.05 0.44 7.89 -51.93 -0.41 0.03 16 46 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 LS Contribution 343.49 15.07 5.18 5.18 Total: -1.00 -31.17 343.49 -10.65 -41.82 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -8.59 Total: -3.53 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: -0.50 Total: -22.39 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: -1.65 Total: -41.97 kcal Atomic # 14 Polarization: 25.98 SS G_CDS: -5.08 Total: 20.90 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.17 -10.65 -41.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702416150.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.615 kcal (2) G-P(sol) polarization free energy of solvation -31.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds