Wall clock time and date at job start Mon Mar 30 2020 04:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.49707 * 110.99801 * 2 1 4 4 C 1.50120 * 104.74202 * 245.78985 * 3 2 1 5 5 H 1.09002 * 110.05487 * 80.32135 * 4 3 2 6 6 C 1.50741 * 126.19721 * 216.34027 * 4 3 2 7 7 N 1.50187 * 102.14300 * 154.76579 * 6 4 3 8 8 C 1.46898 * 111.00180 * 213.03356 * 7 6 4 9 9 C 1.53004 * 109.47178 * 289.68784 * 8 7 6 10 10 C 1.52997 * 109.46982 * 179.97438 * 9 8 7 11 11 C 1.53003 * 109.46867 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47038 * 180.02562 * 11 10 9 13 13 H 1.08006 * 120.00159 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00120 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00089 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99938 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 269.99556 * 16 14 12 18 18 H 1.48503 * 109.47261 * 149.99737 * 16 14 12 19 19 H 1.48500 * 109.47454 * 29.99730 * 16 14 12 20 20 C 1.49701 * 107.64862 * 334.70169 * 7 6 4 21 21 C 1.50135 * 104.74080 * 352.55017 * 20 7 6 22 22 C 1.53003 * 110.07131 * 279.64701 * 21 20 7 23 23 C 1.50762 * 126.47448 * 143.75478 * 21 20 7 24 24 H 1.08996 * 109.47475 * 60.12400 * 1 2 3 25 25 H 1.09003 * 109.46541 * 180.12410 * 1 2 3 26 26 H 1.08995 * 109.46895 * 300.12058 * 1 2 3 27 27 H 1.09007 * 110.38173 * 126.97020 * 3 2 1 28 28 H 1.09001 * 110.38476 * 4.60629 * 3 2 1 29 29 H 1.09001 * 110.86610 * 36.60558 * 6 4 3 30 30 H 1.09000 * 110.86638 * 272.93257 * 6 4 3 31 31 H 1.08996 * 109.47442 * 169.68529 * 8 7 6 32 32 H 1.09004 * 109.46841 * 49.68267 * 8 7 6 33 33 H 1.08996 * 109.47142 * 59.99561 * 9 8 7 34 34 H 1.09004 * 109.46812 * 299.99501 * 9 8 7 35 35 H 1.08996 * 109.47435 * 59.99869 * 10 9 8 36 36 H 1.08996 * 109.47029 * 299.99747 * 10 9 8 37 37 H 1.09003 * 109.46825 * 60.00325 * 11 10 9 38 38 H 1.08996 * 109.47396 * 299.99898 * 11 10 9 39 39 H 0.96998 * 119.99255 * 0.02562 * 15 14 12 40 40 H 1.09001 * 110.38114 * 111.36671 * 20 7 6 41 41 H 1.09000 * 110.37787 * 233.62318 * 20 7 6 42 42 H 1.08998 * 109.46698 * 58.98175 * 22 21 20 43 43 H 1.08995 * 109.47548 * 178.98567 * 22 21 20 44 44 H 1.09010 * 109.46567 * 298.98983 * 22 21 20 45 45 H 1.09002 * 110.86348 * 323.30371 * 23 21 20 46 46 H 1.08995 * 110.86822 * 86.97744 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0055 1.3976 0.0000 4 6 2.6982 1.5410 -1.3241 5 1 1.9683 1.7446 -2.1077 6 6 3.9669 2.3117 -1.5863 7 7 4.5111 1.6198 -2.8031 8 6 5.9800 1.6193 -2.7956 9 6 6.4918 3.0402 -3.0403 10 6 8.0218 3.0397 -3.0319 11 6 8.5336 4.4606 -3.2772 12 6 10.0406 4.4600 -3.2695 13 1 10.5795 3.5385 -3.1056 14 6 10.7315 5.6361 -3.4707 15 7 10.0754 6.7584 -3.6698 16 14 12.5994 5.6353 -3.4619 17 1 13.0881 5.8748 -2.0801 18 1 13.0992 6.7097 -4.3569 19 1 13.0962 4.3206 -3.9416 20 6 3.9740 0.2224 -2.8090 21 6 3.2743 0.0766 -1.4887 22 6 4.2925 -0.2129 -0.3839 23 6 2.0051 -0.6940 -1.2273 24 1 -0.3634 0.5119 -0.8910 25 1 -0.3632 -1.0277 0.0022 26 1 -0.3633 0.5157 0.8889 27 1 2.7152 1.5319 0.8164 28 1 1.1907 2.1171 0.0821 29 1 4.6566 2.2211 -0.7471 30 1 3.7484 3.3580 -1.7996 31 1 6.3472 0.9603 -3.5824 32 1 6.3383 1.2655 -1.8288 33 1 6.1247 3.6992 -2.2535 34 1 6.1336 3.3940 -4.0071 35 1 8.3893 2.3807 -3.8184 36 1 8.3796 2.6862 -2.0650 37 1 8.1661 5.1199 -2.4908 38 1 8.1757 4.8138 -4.2442 39 1 9.1054 6.7587 -3.6747 40 1 3.2685 0.0903 -3.6293 41 1 4.7889 -0.4970 -2.8903 42 1 5.0160 0.6007 -0.3344 43 1 3.7765 -0.2991 0.5723 44 1 4.8104 -1.1468 -0.6029 45 1 1.3160 -0.6032 -2.0669 46 1 2.2232 -1.7404 -1.0140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702416150.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:27 Heat of formation + Delta-G solvation = -4.306473 kcal Electronic energy + Delta-G solvation = -20816.383578 eV Core-core repulsion = 17933.044913 eV Total energy + Delta-G solvation = -2883.338666 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.28788 -38.24279 -36.63509 -34.78151 -32.92194 -31.85054 -30.04238 -28.17466 -27.58958 -27.25706 -25.44506 -23.66659 -22.21748 -21.75761 -21.16602 -20.00159 -18.87597 -17.34236 -16.85176 -16.51415 -16.13221 -15.98741 -15.65645 -15.32380 -15.01458 -14.75573 -14.67435 -14.02789 -13.91670 -13.52339 -13.46049 -13.14767 -13.08527 -13.02079 -12.66261 -12.52926 -12.50478 -12.33154 -12.20031 -12.10355 -11.94618 -11.88169 -11.52880 -11.49678 -11.45144 -10.97190 -10.62954 -10.55767 -9.50119 -9.28073 -8.70918 -6.41182 1.50988 1.60922 1.78788 2.55790 2.77274 2.81647 2.88949 3.14299 3.60035 3.94102 3.97291 4.04042 4.13235 4.13849 4.23634 4.25710 4.43031 4.45025 4.47471 4.52418 4.55853 4.64378 4.66902 4.68624 4.74108 4.76916 4.79655 4.89852 4.98410 5.01687 5.03946 5.05933 5.07522 5.17312 5.18486 5.19137 5.38188 5.46377 5.54691 5.72467 5.80554 5.97642 6.00043 6.02949 6.17749 6.56469 7.41753 8.69935 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.048849 B = 0.002960 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.062819 B = 9457.961062 C = 9592.553437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.535 5.535 3 C 0.061 3.939 4 C -0.130 4.130 5 H 0.075 0.925 6 C 0.058 3.942 7 N -0.534 5.534 8 C 0.062 3.938 9 C -0.100 4.100 10 C -0.090 4.090 11 C 0.008 3.992 12 C -0.621 4.621 13 H 0.051 0.949 14 C -0.043 4.043 15 N -0.939 5.939 16 Si 1.122 2.878 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.268 1.268 20 C 0.065 3.935 21 C -0.107 4.107 22 C -0.139 4.139 23 C 0.069 3.931 24 H 0.028 0.972 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.038 0.962 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.049 0.951 37 H -0.015 1.015 38 H -0.014 1.014 39 H 0.255 0.745 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.044 0.956 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.537 -17.109 6.841 26.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.259 5.259 3 C -0.067 4.067 4 C -0.150 4.150 5 H 0.093 0.907 6 C -0.069 4.069 7 N -0.258 5.258 8 C -0.066 4.066 9 C -0.139 4.139 10 C -0.128 4.128 11 C -0.029 4.029 12 C -0.658 4.658 13 H 0.069 0.931 14 C -0.240 4.240 15 N -0.577 5.577 16 Si 0.942 3.058 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.193 1.193 20 C -0.063 4.063 21 C -0.108 4.108 22 C -0.196 4.196 23 C -0.058 4.058 24 H 0.046 0.954 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.004 0.996 38 H 0.004 0.996 39 H 0.064 0.936 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.241 -16.167 6.684 25.274 hybrid contribution -1.414 -0.431 -0.006 1.479 sum -19.655 -16.598 6.677 26.578 Atomic orbital electron populations 1.22585 0.86954 1.02752 1.00983 1.65528 1.09035 1.13459 1.37859 1.22052 0.98981 0.89839 0.95836 1.22489 0.96956 0.96399 0.99131 0.90702 1.22329 0.94865 0.98239 0.91504 1.65208 1.07561 1.14422 1.38605 1.22213 0.87344 0.96689 1.00401 1.21438 0.94460 0.96742 1.01212 1.21287 0.94517 0.96685 1.00311 1.19187 0.95569 0.94341 0.93843 1.22574 0.93268 0.96829 1.53161 0.93077 1.27544 1.11848 0.91926 0.92654 1.70888 1.09442 1.29034 1.48334 0.82891 0.68620 0.76452 0.77811 1.19627 1.20694 1.19261 1.22089 0.99008 0.89082 0.96071 1.21917 0.96165 0.96240 0.96502 1.21980 0.97848 1.01059 0.98715 1.22411 0.93467 0.98520 0.91437 0.95372 0.90442 0.90759 0.90420 0.91155 0.92709 0.90888 0.90485 0.94427 0.93209 0.92790 0.93037 0.93236 0.99631 0.99602 0.93606 0.89865 0.91252 0.93710 0.90924 0.92160 0.92268 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.25 127.69 1.18 1.37 16 2 N -0.53 -8.42 4.91 -913.33 -4.48 -12.90 16 3 C 0.06 1.01 5.99 84.83 0.51 1.52 16 4 C -0.13 -2.45 2.74 -10.59 -0.03 -2.48 16 5 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 6 C 0.06 1.35 5.22 84.93 0.44 1.80 16 7 N -0.53 -13.35 5.28 -889.15 -4.69 -18.04 16 8 C 0.06 1.73 4.63 86.31 0.40 2.13 16 9 C -0.10 -3.54 5.28 30.59 0.16 -3.37 16 10 C -0.09 -3.83 5.15 30.59 0.16 -3.67 16 11 C 0.01 0.42 4.28 29.85 0.13 0.55 16 12 C -0.62 -36.89 9.11 25.60 0.23 -36.66 16 13 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 14 C -0.04 -2.57 5.46 84.65 0.46 -2.11 16 15 N -0.94 -60.29 13.65 21.45 0.29 -60.00 16 16 Si 1.12 51.50 29.90 68.60 2.05 53.55 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 20 C 0.06 1.29 6.12 84.83 0.52 1.80 16 21 C -0.11 -1.87 1.29 -51.97 -0.07 -1.93 16 22 C -0.14 -2.58 7.85 71.98 0.56 -2.02 16 23 C 0.07 1.03 5.97 84.80 0.51 1.53 16 24 H 0.03 0.34 8.11 -2.39 -0.02 0.32 16 25 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.08 1.38 7.44 -2.38 -0.02 1.36 16 28 H 0.07 1.06 7.65 -2.39 -0.02 1.04 16 29 H 0.05 1.33 5.81 -2.39 -0.01 1.32 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.08 2.08 7.98 -2.39 -0.02 2.06 16 32 H 0.04 1.03 6.79 -2.38 -0.02 1.02 16 33 H 0.05 1.78 7.53 -2.39 -0.02 1.76 16 34 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 37 H -0.01 -0.85 8.01 -2.39 -0.02 -0.86 16 38 H -0.01 -0.83 8.01 -2.39 -0.02 -0.85 16 39 H 0.25 16.58 7.22 -92.71 -0.67 15.92 16 40 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.07 1.32 7.42 -2.39 -0.02 1.30 16 42 H 0.04 0.96 4.65 -2.39 -0.01 0.95 16 43 H 0.07 1.37 6.42 -2.39 -0.02 1.35 16 44 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 45 H 0.06 0.83 7.89 -2.39 -0.02 0.81 16 46 H 0.09 1.25 8.12 -2.39 -0.02 1.23 16 Total: -1.00 -66.61 343.49 -0.65 -67.26 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 1.01 Total: 11.66 kcal Atomic # 6 Polarization: -46.70 SS G_CDS: 5.17 Total: -41.53 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -8.88 Total: -90.94 kcal Atomic # 14 Polarization: 51.50 SS G_CDS: 2.05 Total: 53.55 kcal Total: -66.61 -0.65 -67.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702416150.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.954 kcal (2) G-P(sol) polarization free energy of solvation -66.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds