Wall clock time and date at job start Mon Mar 30 2020 04:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.48512 * 110.99514 * 2 1 4 4 C 1.54286 * 104.71510 * 159.27730 * 3 2 1 5 5 H 1.09004 * 112.83702 * 98.81634 * 4 3 2 6 6 C 1.54282 * 108.81989 * 224.26880 * 4 3 2 7 7 N 1.48514 * 104.71796 * 135.72628 * 6 4 3 8 8 C 1.46893 * 111.00490 * 200.72502 * 7 6 4 9 9 C 1.52997 * 109.47423 * 175.66046 * 8 7 6 10 10 C 1.52998 * 109.47420 * 174.86752 * 9 8 7 11 11 C 1.52997 * 109.47420 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47208 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99974 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99948 * 180.27273 * 12 11 10 15 15 N 1.31516 * 120.00160 * 359.73120 * 14 12 11 16 16 Si 1.86807 * 119.99776 * 179.72509 * 14 12 11 17 17 H 1.48493 * 109.47054 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46668 * 120.00514 * 16 14 12 19 19 H 1.48503 * 109.46804 * 240.00157 * 16 14 12 20 20 C 1.48514 * 104.20417 * 320.27247 * 7 6 4 21 21 C 1.54292 * 104.71785 * 39.72717 * 20 7 6 22 22 C 1.52995 * 112.83485 * 98.82195 * 21 20 7 23 23 C 1.48521 * 110.99907 * 115.39068 * 2 1 3 24 24 H 1.08999 * 109.47271 * 304.60437 * 1 2 3 25 25 H 1.08994 * 109.47363 * 64.60918 * 1 2 3 26 26 H 1.09000 * 109.46783 * 184.60540 * 1 2 3 27 27 H 1.08998 * 110.39634 * 40.46762 * 3 2 1 28 28 H 1.08998 * 110.38970 * 278.08137 * 3 2 1 29 29 H 1.09004 * 110.39188 * 16.91828 * 6 4 3 30 30 H 1.09003 * 110.39187 * 254.53419 * 6 4 3 31 31 H 1.08998 * 109.47547 * 55.65872 * 8 7 6 32 32 H 1.09004 * 109.46777 * 295.65993 * 8 7 6 33 33 H 1.09007 * 109.46986 * 54.87151 * 9 8 7 34 34 H 1.08996 * 109.47212 * 294.86674 * 9 8 7 35 35 H 1.09005 * 109.47055 * 59.99548 * 10 9 8 36 36 H 1.09003 * 109.47499 * 300.00007 * 10 9 8 37 37 H 1.08994 * 109.47171 * 60.00218 * 11 10 9 38 38 H 1.08996 * 109.47212 * 299.99922 * 11 10 9 39 39 H 0.96996 * 119.99933 * 179.97438 * 15 14 12 40 40 H 1.08998 * 110.39234 * 158.53856 * 20 7 6 41 41 H 1.09004 * 110.38764 * 280.91940 * 20 7 6 42 42 H 1.09002 * 109.47179 * 301.59093 * 22 21 20 43 43 H 1.08996 * 109.47266 * 61.59753 * 22 21 20 44 44 H 1.09005 * 109.46836 * 181.59578 * 22 21 20 45 45 H 1.09001 * 110.38585 * 81.91777 * 23 2 1 46 46 H 1.08992 * 110.48557 * 319.58605 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0012 1.3865 0.0000 4 6 3.4446 1.2523 0.5280 5 1 4.1876 1.2418 -0.2695 6 6 3.7040 2.3716 1.5578 7 7 4.4005 1.6959 2.6820 8 6 4.2845 2.4784 3.9198 9 6 4.9185 1.7018 5.0755 10 6 4.9126 2.5685 6.3363 11 6 5.5471 1.7922 7.4919 12 6 5.5407 2.6456 8.7340 13 1 5.1251 3.6420 8.7024 14 6 6.0700 2.1564 9.9094 15 7 6.5756 0.9429 9.9480 16 14 6.0689 3.2172 11.4470 17 1 5.4471 4.5307 11.1417 18 1 5.2925 2.5388 12.5158 19 1 7.4659 3.4250 11.9059 20 6 3.7041 0.3905 2.8104 21 6 3.4447 -0.0599 1.3577 22 6 4.4782 -1.0703 0.8558 23 6 2.0013 -0.5945 1.2526 24 1 -0.3634 0.5836 0.8458 25 1 -0.3634 0.4406 -0.9283 26 1 -0.3633 -1.0244 0.0825 27 1 1.4116 2.0197 0.6631 28 1 2.0031 1.7925 -1.0115 29 1 2.7614 2.8005 1.8980 30 1 4.3402 3.1445 1.1265 31 1 3.2320 2.6595 4.1379 32 1 4.7992 3.4314 3.7967 33 1 5.9453 1.4416 4.8184 34 1 4.3477 0.7914 5.2579 35 1 3.8858 2.8288 6.5935 36 1 5.4834 3.4791 6.1541 37 1 6.5739 1.5323 7.2346 38 1 4.9767 0.8815 7.6744 39 1 6.9483 0.5989 10.7748 40 1 4.3403 -0.3305 3.3237 41 1 2.7615 0.5138 3.3438 42 1 5.4746 -0.6329 0.9195 43 1 4.4360 -1.9692 1.4708 44 1 4.2603 -1.3285 -0.1806 45 1 2.0032 -1.6825 1.1856 46 1 1.4122 -0.2687 2.1098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702416154.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:32 Heat of formation + Delta-G solvation = -8.678248 kcal Electronic energy + Delta-G solvation = -20673.432378 eV Core-core repulsion = 17789.904138 eV Total energy + Delta-G solvation = -2883.528240 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.68841 -37.12769 -34.75732 -33.16141 -32.07945 -31.06975 -28.44864 -27.34014 -26.20648 -25.78879 -23.98111 -22.01491 -21.46332 -20.41121 -20.10979 -18.94527 -16.45397 -16.18638 -15.79365 -15.27125 -15.00827 -14.56920 -14.42967 -14.30048 -13.91945 -13.50353 -13.10757 -12.94766 -12.75005 -12.34495 -12.29060 -12.04372 -11.84194 -11.67516 -11.51675 -11.26279 -11.09133 -10.97376 -10.82871 -10.74195 -10.66855 -10.51843 -10.42411 -10.33944 -9.61395 -9.24420 -8.97966 -8.85639 -8.37804 -8.31839 -5.96928 -3.99037 3.32233 3.39474 3.43829 3.70801 3.95764 4.19056 4.47380 4.51588 4.53099 4.85119 4.93438 5.05133 5.08628 5.10941 5.14536 5.35530 5.37913 5.38928 5.43555 5.48528 5.53713 5.54705 5.59544 5.64806 5.70940 5.84698 5.90355 5.95903 6.01516 6.04837 6.12329 6.21798 6.29597 6.48727 6.51772 6.68948 6.80796 6.89164 6.97940 7.08184 7.24688 7.72427 7.88217 8.04318 8.47244 9.08685 9.64809 11.14476 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.036373 B = 0.003030 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.625409 B = 9238.288950 C = 9302.786664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.515 5.515 3 C 0.036 3.964 4 C -0.087 4.087 5 H 0.096 0.904 6 C 0.035 3.965 7 N -0.507 5.507 8 C 0.046 3.954 9 C -0.114 4.114 10 C -0.109 4.109 11 C 0.021 3.979 12 C -0.519 4.519 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.890 3.110 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.041 3.959 21 C -0.064 4.064 22 C -0.123 4.123 23 C 0.038 3.962 24 H 0.027 0.973 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.029 0.971 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.043 0.957 36 H 0.047 0.953 37 H 0.016 0.984 38 H 0.014 0.986 39 H 0.259 0.741 40 H 0.086 0.914 41 H 0.043 0.957 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.910 -1.694 -21.966 24.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.238 5.238 3 C -0.093 4.093 4 C -0.106 4.106 5 H 0.114 0.886 6 C -0.094 4.094 7 N -0.231 5.231 8 C -0.082 4.082 9 C -0.152 4.152 10 C -0.147 4.147 11 C -0.016 4.016 12 C -0.558 4.558 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.718 3.282 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.087 4.087 21 C -0.065 4.065 22 C -0.180 4.180 23 C -0.090 4.090 24 H 0.046 0.954 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.099 0.901 31 H 0.048 0.952 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.062 0.938 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.101 0.899 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.115 -2.167 -22.413 24.292 hybrid contribution -1.258 1.153 1.929 2.575 sum -10.373 -1.014 -20.484 22.983 Atomic orbital electron populations 1.22511 0.88123 1.02022 1.00976 1.65372 1.08011 1.15305 1.35086 1.23288 0.94654 0.90106 1.01213 1.22704 0.96310 0.94118 0.97496 0.88592 1.23260 0.97319 0.96554 0.92235 1.65439 1.49796 1.03013 1.04819 1.22406 0.98884 0.97506 0.89404 1.21661 1.00976 0.98622 0.93923 1.21597 1.00133 0.98398 0.94572 1.19087 0.95797 0.95227 0.91464 1.21330 1.38761 1.00817 0.94846 0.92744 1.25038 0.95486 0.95057 0.98981 1.69979 1.40521 1.16016 1.27035 0.86560 0.77671 0.80633 0.83288 1.19773 1.21051 1.20999 1.23295 0.97508 0.92895 0.95018 1.21984 0.94564 0.95188 0.94748 1.21598 0.98096 0.97528 1.00776 1.23349 0.94312 1.00454 0.90876 0.95406 0.91268 0.91242 0.93672 0.90106 0.94011 0.90128 0.95234 0.90746 0.91546 0.92778 0.93784 0.93414 0.96581 0.96794 0.93109 0.89541 0.93845 0.91779 0.92541 0.92216 0.89903 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.53 60.07 0.57 0.67 16 2 N -0.51 -4.92 5.66 -238.43 -1.35 -6.27 16 3 C 0.04 0.32 6.03 -2.26 -0.01 0.31 16 4 C -0.09 -0.86 3.75 -88.08 -0.33 -1.19 16 5 H 0.10 0.92 7.94 -51.93 -0.41 0.51 16 6 C 0.03 0.38 6.03 -2.26 -0.01 0.37 16 7 N -0.51 -6.72 5.44 -230.17 -1.25 -7.98 16 8 C 0.05 0.67 4.91 -3.83 -0.02 0.65 16 9 C -0.11 -2.00 4.95 -26.73 -0.13 -2.13 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 11 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 12 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 13 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 16 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 17 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 C 0.04 0.51 4.57 -2.25 -0.01 0.50 16 21 C -0.06 -0.66 1.07 -151.97 -0.16 -0.82 16 22 C -0.12 -1.19 8.66 37.15 0.32 -0.87 16 23 C 0.04 0.38 5.66 -2.26 -0.01 0.36 16 24 H 0.03 0.22 7.97 -51.93 -0.41 -0.19 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.42 6.91 -51.93 -0.36 0.06 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.46 6.92 -51.93 -0.36 0.10 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.03 0.43 7.97 -51.93 -0.41 0.02 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 34 H 0.05 0.95 7.22 -51.93 -0.37 0.58 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.09 1.13 7.55 -51.93 -0.39 0.74 16 41 H 0.04 0.56 6.98 -51.93 -0.36 0.19 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.77 7.90 -51.93 -0.41 0.36 16 46 H 0.05 0.47 6.98 -51.93 -0.36 0.11 16 LS Contribution 351.34 15.07 5.29 5.29 Total: -1.00 -30.50 351.34 -10.98 -41.48 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -8.90 Total: -4.77 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -0.49 Total: -18.01 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: -1.87 Total: -40.95 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.50 -10.98 -41.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702416154.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.802 kcal (2) G-P(sol) polarization free energy of solvation -30.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds