Wall clock time and date at job start Mon Mar 30 2020 04:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.48512 * 110.99514 * 2 1 4 4 C 1.54286 * 104.71510 * 159.27730 * 3 2 1 5 5 H 1.09004 * 112.83702 * 98.81634 * 4 3 2 6 6 C 1.54282 * 108.81989 * 224.26880 * 4 3 2 7 7 N 1.48514 * 104.71796 * 135.72628 * 6 4 3 8 8 C 1.46893 * 111.00490 * 200.72502 * 7 6 4 9 9 C 1.52997 * 109.47423 * 175.66046 * 8 7 6 10 10 C 1.52998 * 109.47420 * 174.86752 * 9 8 7 11 11 C 1.52997 * 109.47420 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47208 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99974 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99948 * 180.27273 * 12 11 10 15 15 N 1.31516 * 120.00160 * 359.73120 * 14 12 11 16 16 Si 1.86807 * 119.99776 * 179.72509 * 14 12 11 17 17 H 1.48493 * 109.47054 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46668 * 120.00514 * 16 14 12 19 19 H 1.48503 * 109.46804 * 240.00157 * 16 14 12 20 20 C 1.48514 * 104.20417 * 320.27247 * 7 6 4 21 21 C 1.54292 * 104.71785 * 39.72717 * 20 7 6 22 22 C 1.52995 * 112.83485 * 98.82195 * 21 20 7 23 23 C 1.48521 * 110.99907 * 115.39068 * 2 1 3 24 24 H 1.08999 * 109.47271 * 304.60437 * 1 2 3 25 25 H 1.08994 * 109.47363 * 64.60918 * 1 2 3 26 26 H 1.09000 * 109.46783 * 184.60540 * 1 2 3 27 27 H 1.08998 * 110.39634 * 40.46762 * 3 2 1 28 28 H 1.08998 * 110.38970 * 278.08137 * 3 2 1 29 29 H 1.09004 * 110.39188 * 16.91828 * 6 4 3 30 30 H 1.09003 * 110.39187 * 254.53419 * 6 4 3 31 31 H 1.08998 * 109.47547 * 55.65872 * 8 7 6 32 32 H 1.09004 * 109.46777 * 295.65993 * 8 7 6 33 33 H 1.09007 * 109.46986 * 54.87151 * 9 8 7 34 34 H 1.08996 * 109.47212 * 294.86674 * 9 8 7 35 35 H 1.09005 * 109.47055 * 59.99548 * 10 9 8 36 36 H 1.09003 * 109.47499 * 300.00007 * 10 9 8 37 37 H 1.08994 * 109.47171 * 60.00218 * 11 10 9 38 38 H 1.08996 * 109.47212 * 299.99922 * 11 10 9 39 39 H 0.96996 * 119.99933 * 179.97438 * 15 14 12 40 40 H 1.08998 * 110.39234 * 158.53856 * 20 7 6 41 41 H 1.09004 * 110.38764 * 280.91940 * 20 7 6 42 42 H 1.09002 * 109.47179 * 301.59093 * 22 21 20 43 43 H 1.08996 * 109.47266 * 61.59753 * 22 21 20 44 44 H 1.09005 * 109.46836 * 181.59578 * 22 21 20 45 45 H 1.09001 * 110.38585 * 81.91777 * 23 2 1 46 46 H 1.08992 * 110.48557 * 319.58605 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0012 1.3865 0.0000 4 6 3.4446 1.2523 0.5280 5 1 4.1876 1.2418 -0.2695 6 6 3.7040 2.3716 1.5578 7 7 4.4005 1.6959 2.6820 8 6 4.2845 2.4784 3.9198 9 6 4.9185 1.7018 5.0755 10 6 4.9126 2.5685 6.3363 11 6 5.5471 1.7922 7.4919 12 6 5.5407 2.6456 8.7340 13 1 5.1251 3.6420 8.7024 14 6 6.0700 2.1564 9.9094 15 7 6.5756 0.9429 9.9480 16 14 6.0689 3.2172 11.4470 17 1 5.4471 4.5307 11.1417 18 1 5.2925 2.5388 12.5158 19 1 7.4659 3.4250 11.9059 20 6 3.7041 0.3905 2.8104 21 6 3.4447 -0.0599 1.3577 22 6 4.4782 -1.0703 0.8558 23 6 2.0013 -0.5945 1.2526 24 1 -0.3634 0.5836 0.8458 25 1 -0.3634 0.4406 -0.9283 26 1 -0.3633 -1.0244 0.0825 27 1 1.4116 2.0197 0.6631 28 1 2.0031 1.7925 -1.0115 29 1 2.7614 2.8005 1.8980 30 1 4.3402 3.1445 1.1265 31 1 3.2320 2.6595 4.1379 32 1 4.7992 3.4314 3.7967 33 1 5.9453 1.4416 4.8184 34 1 4.3477 0.7914 5.2579 35 1 3.8858 2.8288 6.5935 36 1 5.4834 3.4791 6.1541 37 1 6.5739 1.5323 7.2346 38 1 4.9767 0.8815 7.6744 39 1 6.9483 0.5989 10.7748 40 1 4.3403 -0.3305 3.3237 41 1 2.7615 0.5138 3.3438 42 1 5.4746 -0.6329 0.9195 43 1 4.4360 -1.9692 1.4708 44 1 4.2603 -1.3285 -0.1806 45 1 2.0032 -1.6825 1.1856 46 1 1.4122 -0.2687 2.1098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702416154.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:31 Heat of formation + Delta-G solvation = -28.576909 kcal Electronic energy + Delta-G solvation = -20674.295249 eV Core-core repulsion = 17789.904138 eV Total energy + Delta-G solvation = -2884.391111 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.53839 -38.15091 -36.34066 -34.71150 -33.46170 -32.13910 -30.02477 -28.09102 -27.29800 -26.95229 -25.42656 -23.33402 -22.26739 -21.88750 -21.43574 -19.86538 -18.42695 -17.30954 -16.76543 -16.51051 -16.33163 -15.83393 -15.62909 -15.31907 -14.92128 -14.56739 -14.39436 -13.95252 -13.88311 -13.67995 -13.61239 -13.38068 -12.94289 -12.89310 -12.76251 -12.47089 -12.40799 -12.29145 -12.18641 -12.00343 -11.86727 -11.61325 -11.54919 -11.51134 -11.37203 -11.30749 -10.97997 -10.57300 -9.65320 -9.33999 -8.21145 -6.32779 1.38654 1.39207 1.52758 2.39840 2.90465 3.05851 3.11554 3.37407 3.64969 3.70394 4.02186 4.04940 4.11863 4.21773 4.24109 4.32907 4.45771 4.47344 4.50065 4.55303 4.64496 4.65185 4.68601 4.75327 4.79021 4.84159 4.87590 4.89342 4.97201 5.02167 5.15186 5.18676 5.21027 5.24445 5.25369 5.32129 5.43588 5.52927 5.74897 5.77842 5.84153 5.87720 6.00192 6.04895 6.24412 6.84796 7.36667 8.91022 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.036373 B = 0.003030 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.625409 B = 9238.288950 C = 9302.786664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.522 5.522 3 C 0.039 3.961 4 C -0.083 4.083 5 H 0.102 0.898 6 C 0.036 3.964 7 N -0.519 5.519 8 C 0.057 3.943 9 C -0.102 4.102 10 C -0.096 4.096 11 C 0.024 3.976 12 C -0.544 4.544 13 H 0.060 0.940 14 C -0.003 4.003 15 N -0.934 5.934 16 Si 0.967 3.033 17 H -0.261 1.261 18 H -0.277 1.277 19 H -0.277 1.277 20 C 0.040 3.960 21 C -0.062 4.062 22 C -0.118 4.118 23 C 0.041 3.959 24 H 0.025 0.975 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.043 0.957 28 H 0.094 0.906 29 H 0.044 0.956 30 H 0.089 0.911 31 H 0.034 0.966 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.052 0.948 37 H -0.011 1.011 38 H -0.012 1.012 39 H 0.264 0.736 40 H 0.073 0.927 41 H 0.037 0.963 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.087 0.913 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.792 -0.571 -22.833 25.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.246 5.246 3 C -0.089 4.089 4 C -0.102 4.102 5 H 0.120 0.880 6 C -0.092 4.092 7 N -0.242 5.242 8 C -0.072 4.072 9 C -0.140 4.140 10 C -0.134 4.134 11 C -0.013 4.013 12 C -0.582 4.582 13 H 0.078 0.922 14 C -0.201 4.201 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.185 1.185 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.088 4.088 21 C -0.063 4.063 22 C -0.175 4.175 23 C -0.087 4.087 24 H 0.043 0.957 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.061 0.939 28 H 0.112 0.888 29 H 0.062 0.938 30 H 0.108 0.892 31 H 0.052 0.948 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.008 0.992 38 H 0.006 0.994 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.105 0.895 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.007 -1.038 -23.301 25.380 hybrid contribution -0.974 0.755 2.183 2.507 sum -10.981 -0.284 -21.117 23.803 Atomic orbital electron populations 1.22556 0.87115 1.02508 1.01462 1.65392 1.09038 1.15524 1.34599 1.23281 0.93830 0.89940 1.01850 1.22701 0.97156 0.93163 0.97210 0.88000 1.23313 0.97345 0.96991 0.91520 1.65405 1.50723 1.03387 1.04689 1.22195 0.98724 0.97235 0.88996 1.21467 1.00679 0.98183 0.93683 1.21401 0.99728 0.98250 0.94051 1.19006 0.94276 0.94753 0.93274 1.21767 1.39055 1.01363 0.96046 0.92202 1.26032 0.94799 0.96446 1.02785 1.70112 1.41188 1.17908 1.28268 0.85374 0.78021 0.78977 0.78526 1.18523 1.20285 1.20252 1.23283 0.96747 0.92386 0.96358 1.21973 0.95167 0.95765 0.93429 1.21554 0.97401 0.97358 1.01221 1.23294 0.93744 1.00721 0.90957 0.95652 0.90138 0.90703 0.93867 0.88810 0.93785 0.89226 0.94825 0.90181 0.92587 0.93269 0.93270 0.92903 0.99243 0.99353 0.92750 0.90892 0.94445 0.92586 0.92360 0.91440 0.89495 0.94332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.53 127.69 1.22 1.39 16 2 N -0.52 -9.00 5.66 -908.27 -5.14 -14.14 16 3 C 0.04 0.62 6.03 86.43 0.52 1.15 16 4 C -0.08 -1.49 3.75 -9.15 -0.03 -1.52 16 5 H 0.10 1.73 7.94 -2.38 -0.02 1.72 16 6 C 0.04 0.73 6.03 86.43 0.52 1.25 16 7 N -0.52 -13.29 5.44 -882.14 -4.80 -18.09 16 8 C 0.06 1.61 4.91 86.30 0.42 2.04 16 9 C -0.10 -3.62 4.95 30.59 0.15 -3.47 16 10 C -0.10 -4.07 5.15 30.59 0.16 -3.91 16 11 C 0.02 1.32 4.97 29.85 0.15 1.46 16 12 C -0.54 -31.92 9.11 25.60 0.23 -31.69 16 13 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 14 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 15 N -0.93 -58.19 13.29 21.45 0.28 -57.91 16 16 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 17 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 C 0.04 0.99 4.57 86.43 0.39 1.38 16 21 C -0.06 -1.22 1.07 -50.54 -0.05 -1.28 16 22 C -0.12 -2.18 8.66 71.98 0.62 -1.55 16 23 C 0.04 0.76 5.66 86.42 0.49 1.25 16 24 H 0.02 0.37 7.97 -2.39 -0.02 0.35 16 25 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.04 0.72 6.91 -2.39 -0.02 0.70 16 28 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.04 0.88 6.92 -2.39 -0.02 0.87 16 30 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.03 0.93 7.97 -2.39 -0.02 0.92 16 32 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.05 1.77 7.22 -2.39 -0.02 1.75 16 35 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 36 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 37 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 38 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 39 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 40 H 0.07 1.95 7.55 -2.39 -0.02 1.93 16 41 H 0.04 0.95 6.98 -2.38 -0.02 0.94 16 42 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 45 H 0.09 1.52 7.90 -2.39 -0.02 1.50 16 46 H 0.04 0.77 6.98 -2.39 -0.02 0.75 16 Total: -1.00 -65.06 351.34 -1.48 -66.53 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 0.90 Total: 9.80 kcal Atomic # 6 Polarization: -38.48 SS G_CDS: 5.26 Total: -33.23 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -9.66 Total: -90.14 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -65.06 -1.48 -66.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702416154.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.955 kcal (2) G-P(sol) polarization free energy of solvation -65.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds