Wall clock time and date at job start Mon Mar 30 2020 05:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47332 * 2 1 4 4 H 1.09007 * 109.47112 * 304.99971 * 3 2 1 5 5 C 1.50699 * 109.47177 * 184.99845 * 3 2 1 6 6 H 1.07994 * 120.00428 * 245.29994 * 5 3 2 7 7 C 1.37879 * 119.99788 * 65.30354 * 5 3 2 8 8 N 1.31515 * 120.00217 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 120.00014 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47071 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46768 * 119.99766 * 9 7 5 12 12 H 1.48501 * 109.46947 * 239.99702 * 9 7 5 13 13 N 1.46904 * 109.47614 * 64.99693 * 3 2 1 14 14 C 1.48516 * 110.99981 * 180.98933 * 13 3 2 15 15 C 1.54286 * 104.71775 * 200.73909 * 14 13 3 16 16 C 1.52995 * 112.37771 * 147.04786 * 15 14 13 17 17 C 1.54283 * 108.82505 * 272.17302 * 15 14 13 18 18 N 1.48514 * 104.81283 * 87.71454 * 17 15 14 19 19 C 1.46903 * 111.00316 * 159.34453 * 18 17 15 20 20 C 1.48804 * 104.06331 * 39.72768 * 18 17 15 21 21 C 1.54283 * 104.75367 * 320.30720 * 20 18 17 22 22 C 1.52997 * 112.83733 * 146.72508 * 21 20 18 23 23 C 1.48512 * 110.99540 * 65.58886 * 13 3 2 24 24 H 1.08996 * 109.47342 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46808 * 300.00477 * 1 2 3 26 26 H 1.09001 * 109.47134 * 59.99999 * 1 2 3 27 27 H 1.08999 * 109.47010 * 239.99613 * 2 1 3 28 28 H 1.09003 * 109.46621 * 120.00074 * 2 1 3 29 29 H 0.96999 * 120.00086 * 180.02562 * 8 7 5 30 30 H 1.08998 * 110.38506 * 81.92962 * 14 13 3 31 31 H 1.08993 * 110.48516 * 319.59803 * 14 13 3 32 32 H 1.09005 * 109.47449 * 182.13813 * 16 15 14 33 33 H 1.09003 * 109.47358 * 302.13414 * 16 15 14 34 34 H 1.08994 * 109.47406 * 62.14245 * 16 15 14 35 35 H 1.09008 * 110.39044 * 206.58082 * 17 15 14 36 36 H 1.09005 * 110.38928 * 328.84682 * 17 15 14 37 37 H 1.08997 * 109.47262 * 59.99874 * 19 18 17 38 38 H 1.08993 * 109.47366 * 180.02562 * 19 18 17 39 39 H 1.08999 * 109.46552 * 300.00363 * 19 18 17 40 40 H 1.09000 * 110.36799 * 201.49089 * 20 18 17 41 41 H 1.08990 * 110.37340 * 79.13025 * 20 18 17 42 42 H 1.08998 * 109.47208 * 301.60054 * 22 21 20 43 43 H 1.09001 * 109.46636 * 61.59509 * 22 21 20 44 44 H 1.08997 * 109.47168 * 181.59467 * 22 21 20 45 45 H 1.08997 * 110.39487 * 278.09050 * 23 13 3 46 46 H 1.09006 * 110.39349 * 40.47555 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4442 -0.1238 6 1 4.1504 1.8107 0.6896 7 6 4.1392 0.9778 -1.2757 8 7 3.3983 0.5319 -2.2665 9 14 6.0010 0.9793 -1.4289 10 1 6.5996 1.5265 -0.1850 11 1 6.4814 -0.4101 -1.6391 12 1 6.4019 1.8218 -2.5842 13 7 1.6514 2.0993 1.2552 14 6 2.1101 3.5117 1.2809 15 6 2.1258 3.8915 2.7762 16 6 3.2375 4.8874 3.1126 17 6 0.7292 4.4145 3.1717 18 7 -0.0351 3.2013 3.5584 19 6 -1.1840 3.5503 4.4047 20 6 0.9512 2.3758 4.3068 21 6 2.2731 2.5414 3.5285 22 6 3.5046 2.5078 4.4358 23 6 2.3332 1.4734 2.4166 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.8185 0.2034 -3.0767 30 1 1.4129 4.1472 0.7349 31 1 3.1108 3.5955 0.8573 32 1 3.2295 5.0930 4.1830 33 1 4.2018 4.4642 2.8311 34 1 3.0733 5.8144 2.5634 35 1 0.8054 5.1004 4.0155 36 1 0.2544 4.9082 2.3237 37 1 -1.8468 4.2216 3.8588 38 1 -1.7258 2.6436 4.6738 39 1 -0.8315 4.0446 5.3099 40 1 0.6432 1.3303 4.3139 41 1 1.0614 2.7471 5.3256 42 1 3.4290 3.3002 5.1804 43 1 3.5597 1.5418 4.9377 44 1 4.4021 2.6573 3.8357 45 1 1.8047 0.5721 2.7269 46 1 3.3690 1.2410 2.1690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706252882.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:41 Heat of formation + Delta-G solvation = -7.847111 kcal Electronic energy + Delta-G solvation = -22723.991160 eV Core-core repulsion = 19840.498960 eV Total energy + Delta-G solvation = -2883.492199 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.62905 -38.03259 -35.57126 -33.90721 -32.99432 -32.49898 -29.00091 -28.24483 -26.86977 -26.57597 -25.96755 -24.12727 -22.85930 -21.46699 -20.85570 -19.04702 -18.40890 -16.98233 -16.48017 -15.92961 -15.89983 -15.49249 -14.97382 -14.82509 -14.50725 -14.46832 -14.24312 -14.08623 -13.70965 -13.45684 -13.25878 -12.98293 -12.91935 -12.75270 -12.66577 -12.58175 -12.40019 -12.32967 -12.00321 -11.79373 -11.68499 -11.53675 -11.44544 -11.35140 -11.06759 -11.00911 -10.87524 -10.42483 -9.14942 -8.83433 -8.00974 -6.22116 1.35173 1.37999 1.47412 2.40682 3.17873 3.23129 3.52173 3.58955 3.76379 3.96689 4.25790 4.36898 4.43826 4.53651 4.56993 4.58912 4.66575 4.72778 4.74672 4.80642 4.85895 4.86848 4.91283 4.92226 4.98912 5.05299 5.08882 5.17860 5.20011 5.20967 5.26600 5.28499 5.36230 5.42403 5.47135 5.51432 5.57439 5.65415 5.80629 6.03745 6.09280 6.23878 6.33815 6.45192 6.62649 7.03307 7.47811 8.95425 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.021196 B = 0.007369 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.676548 B = 3798.822526 C = 4477.818625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.095 4.095 3 C 0.209 3.791 4 H -0.002 1.002 5 C -0.542 4.542 6 H 0.055 0.945 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 0.944 3.056 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.487 5.487 14 C 0.055 3.945 15 C -0.063 4.063 16 C -0.124 4.124 17 C 0.059 3.941 18 N -0.519 5.519 19 C 0.018 3.982 20 C 0.061 3.939 21 C -0.065 4.065 22 C -0.123 4.123 23 C 0.058 3.942 24 H 0.044 0.956 25 H 0.058 0.942 26 H 0.028 0.972 27 H 0.048 0.952 28 H 0.030 0.970 29 H 0.260 0.740 30 H 0.052 0.948 31 H 0.025 0.975 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.075 0.925 43 H 0.061 0.939 44 H 0.048 0.952 45 H 0.056 0.944 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.607 6.735 15.073 16.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.133 4.133 3 C 0.101 3.899 4 H 0.016 0.984 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.181 4.181 8 N -0.555 5.555 9 Si 0.770 3.230 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.209 5.209 14 C -0.074 4.074 15 C -0.064 4.064 16 C -0.181 4.181 17 C -0.069 4.069 18 N -0.242 5.242 19 C -0.130 4.130 20 C -0.067 4.067 21 C -0.066 4.066 22 C -0.181 4.181 23 C -0.070 4.070 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.052 0.948 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -4.452 6.322 14.447 16.386 hybrid contribution 2.138 0.121 -0.440 2.186 sum -2.314 6.444 14.006 15.590 Atomic orbital electron populations 1.21538 0.96316 0.99561 1.00638 1.21293 0.94471 0.98237 0.99314 1.19124 0.91826 0.91395 0.87512 0.98438 1.21991 0.93980 1.41334 1.00833 0.92717 1.25636 1.01627 0.95128 0.95679 1.70060 1.36222 1.43156 1.06052 0.85728 0.81710 0.77599 0.77950 1.19331 1.20772 1.20896 1.65612 1.51493 1.01229 1.02570 1.22906 0.97532 0.91566 0.95352 1.22015 0.95463 0.94933 0.93992 1.21646 0.96613 0.97788 1.02076 1.23001 0.92256 0.91921 0.99681 1.65328 1.07025 1.14662 1.37209 1.22504 0.93955 1.01275 0.95309 1.23042 0.90475 0.98548 0.94661 1.22041 0.95542 0.94214 0.94849 1.21644 0.95472 1.02439 0.98564 1.22925 0.96628 0.96449 0.91035 0.93696 0.92333 0.95230 0.93372 0.95128 0.93116 0.92931 0.95672 0.90524 0.93253 0.92023 0.92814 0.91413 0.91319 0.91263 0.94754 0.91221 0.92805 0.90574 0.91974 0.93279 0.92512 0.95295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.25 9.80 71.98 0.71 -4.55 16 2 C -0.09 -4.68 5.23 30.59 0.16 -4.52 16 3 C 0.21 10.79 1.72 44.17 0.08 10.86 16 4 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 5 C -0.54 -29.60 6.46 25.60 0.17 -29.44 16 6 H 0.05 2.98 5.66 -2.91 -0.02 2.97 16 7 C 0.02 1.04 5.30 84.66 0.45 1.49 16 8 N -0.92 -53.70 11.71 21.45 0.25 -53.45 16 9 Si 0.94 44.08 29.54 68.60 2.03 46.11 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 N -0.49 -21.05 4.69 -861.36 -4.04 -25.09 16 14 C 0.06 2.20 5.30 86.43 0.46 2.65 16 15 C -0.06 -1.89 1.07 -50.54 -0.05 -1.94 16 16 C -0.12 -3.05 7.65 71.98 0.55 -2.50 16 17 C 0.06 1.59 5.48 86.43 0.47 2.07 16 18 N -0.52 -14.58 5.52 -907.47 -5.01 -19.58 16 19 C 0.02 0.39 9.54 127.69 1.22 1.61 16 20 C 0.06 1.61 5.52 86.37 0.48 2.09 16 21 C -0.07 -1.95 1.07 -50.54 -0.05 -2.00 16 22 C -0.12 -3.03 7.67 71.98 0.55 -2.48 16 23 C 0.06 2.26 4.35 86.43 0.38 2.64 16 24 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.06 2.43 7.75 -2.38 -0.02 2.41 16 26 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.05 2.67 6.41 -2.39 -0.02 2.66 16 28 H 0.03 1.47 6.86 -2.39 -0.02 1.45 16 29 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.05 2.13 7.48 -2.39 -0.02 2.11 16 31 H 0.02 1.13 6.26 -2.39 -0.01 1.12 16 32 H 0.08 1.51 7.20 -2.38 -0.02 1.49 16 33 H 0.05 1.34 7.25 -2.39 -0.02 1.32 16 34 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.05 1.20 7.81 -2.38 -0.02 1.18 16 36 H 0.07 1.95 7.48 -2.38 -0.02 1.93 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.03 0.63 7.98 -2.39 -0.02 0.61 16 40 H 0.07 1.97 7.48 -2.39 -0.02 1.95 16 41 H 0.05 1.19 7.76 -2.39 -0.02 1.18 16 42 H 0.08 1.49 7.20 -2.39 -0.02 1.48 16 43 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.05 1.32 7.24 -2.39 -0.02 1.31 16 45 H 0.06 2.23 6.91 -2.39 -0.02 2.22 16 46 H 0.03 1.28 5.55 -2.38 -0.01 1.27 16 Total: -1.00 -61.09 334.56 -0.29 -61.38 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.92 Total: 14.66 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: 5.55 Total: -24.01 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -8.80 Total: -98.13 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -61.09 -0.29 -61.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706252882.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.533 kcal (2) G-P(sol) polarization free energy of solvation -61.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds