Wall clock time and date at job start Mon Mar 30 2020 04:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.50086 * 111.00072 * 2 1 4 4 C 1.51429 * 102.34923 * 212.46602 * 3 2 1 5 5 C 1.53005 * 111.42487 * 287.34200 * 4 3 2 6 6 C 1.51589 * 123.73634 * 150.11617 * 4 3 2 7 7 N 1.50221 * 102.05565 * 208.51233 * 6 4 3 8 8 C 1.46900 * 110.99872 * 148.26593 * 7 6 4 9 9 C 1.52997 * 109.46889 * 169.99615 * 8 7 6 10 10 C 1.52994 * 109.47458 * 180.02562 * 9 8 7 11 11 C 1.50693 * 109.47621 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00234 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00306 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99920 * 180.02562 * 13 11 10 15 15 Si 1.86805 * 119.99829 * 359.97438 * 13 11 10 16 16 H 1.48494 * 109.46964 * 90.00195 * 15 13 11 17 17 H 1.48496 * 109.46905 * 210.00145 * 15 13 11 18 18 H 1.48500 * 109.47147 * 330.00182 * 15 13 11 19 19 C 1.49960 * 107.44299 * 26.73287 * 7 6 4 20 20 C 1.49767 * 104.36842 * 6.72770 * 19 7 6 21 21 C 1.52994 * 108.40606 * 77.39872 * 20 19 7 22 22 C 1.49645 * 128.35129 * 211.75878 * 20 19 7 23 23 H 1.09002 * 109.47091 * 60.00108 * 1 2 3 24 24 H 1.09000 * 109.47299 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47290 * 300.00240 * 1 2 3 26 26 H 1.09001 * 110.82968 * 94.25119 * 3 2 1 27 27 H 1.09002 * 111.00046 * 330.75427 * 3 2 1 28 28 H 1.09000 * 109.46873 * 278.36382 * 5 4 3 29 29 H 1.08997 * 109.47127 * 38.36221 * 5 4 3 30 30 H 1.08995 * 109.47201 * 158.36744 * 5 4 3 31 31 H 1.09002 * 110.91315 * 90.32068 * 6 4 3 32 32 H 1.09003 * 110.94127 * 326.71260 * 6 4 3 33 33 H 1.09000 * 109.46897 * 50.00254 * 8 7 6 34 34 H 1.08991 * 109.47152 * 290.00225 * 8 7 6 35 35 H 1.09003 * 109.47041 * 59.99867 * 9 8 7 36 36 H 1.09003 * 109.47785 * 300.00721 * 9 8 7 37 37 H 1.09003 * 109.47190 * 300.01060 * 10 9 8 38 38 H 1.09003 * 109.47124 * 59.99892 * 10 9 8 39 39 H 0.97006 * 119.99997 * 179.97438 * 14 13 11 40 40 H 1.09001 * 110.44967 * 125.45457 * 19 7 6 41 41 H 1.08998 * 110.45163 * 248.00102 * 19 7 6 42 42 H 1.08996 * 109.47379 * 315.24184 * 21 20 19 43 43 H 1.09001 * 109.47211 * 75.24488 * 21 20 19 44 44 H 1.09003 * 109.47336 * 195.24337 * 21 20 19 45 45 H 1.08991 * 110.41502 * 28.79002 * 22 20 19 46 46 H 1.09003 * 110.51047 * 266.38526 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0068 1.4012 0.0000 4 6 3.2880 1.2562 -0.7941 5 6 4.3651 0.5266 0.0112 6 6 3.8841 2.3640 -1.6400 7 7 4.6137 1.5904 -2.7011 8 6 4.6247 2.3242 -3.9737 9 6 5.5779 1.6345 -4.9517 10 6 5.5899 2.3989 -6.2769 11 6 6.5282 1.7193 -7.2405 12 1 7.0624 0.8307 -6.9381 13 6 6.7050 2.2319 -8.5082 14 7 7.5235 1.6385 -9.3493 15 14 5.7806 3.7686 -9.0315 16 1 6.5900 4.9693 -8.7024 17 1 5.5343 3.7236 -10.4953 18 1 4.4827 3.8343 -8.3130 19 6 3.9220 0.2681 -2.8491 20 6 2.7064 0.3855 -1.9822 21 6 1.6641 1.2255 -2.7230 22 6 2.0056 -0.6914 -1.2150 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 2.2162 1.7360 1.0160 27 1 1.3179 2.0841 -0.4972 28 1 4.8545 1.2303 0.6846 29 1 3.9053 -0.2727 0.5924 30 1 5.1030 0.1024 -0.6697 31 1 4.5759 2.9705 -1.0555 32 1 3.1016 2.9832 -2.0786 33 1 4.9593 3.3469 -3.8004 34 1 3.6193 2.3372 -4.3942 35 1 5.2433 0.6116 -5.1249 36 1 6.5834 1.6214 -4.5311 37 1 4.5845 2.4124 -6.6978 38 1 5.9247 3.4217 -6.1034 39 1 7.6476 1.9989 -10.2413 40 1 3.6350 0.1026 -3.8875 41 1 4.5644 -0.5392 -2.4972 42 1 2.1467 2.0985 -3.1625 43 1 1.2086 0.6266 -3.5116 44 1 0.8945 1.5500 -2.0226 45 1 2.7089 -1.4730 -0.9282 46 1 1.1906 -1.1117 -1.8043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706258379.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:25 Heat of formation + Delta-G solvation = 16.955944 kcal Electronic energy + Delta-G solvation = -21623.099832 eV Core-core repulsion = 18740.683174 eV Total energy + Delta-G solvation = -2882.416658 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.79867 -38.18403 -35.96336 -34.30956 -32.79489 -32.38442 -29.52245 -29.05009 -27.57602 -27.35421 -25.77435 -23.72749 -22.40982 -21.64490 -21.03686 -19.37159 -18.87012 -16.83558 -16.70692 -16.67142 -16.45734 -16.18821 -15.81487 -15.11089 -14.71324 -14.65011 -14.48015 -13.86580 -13.65238 -13.52307 -13.35661 -13.30010 -13.16260 -12.92536 -12.82813 -12.71496 -12.51468 -12.45813 -12.21143 -12.04838 -11.86816 -11.77349 -11.48568 -11.40338 -11.32649 -11.20402 -10.77802 -10.71535 -9.46884 -9.12492 -8.30156 -6.34501 1.34614 1.36643 1.48656 2.35402 2.80132 2.89528 2.94786 3.04916 3.66071 3.94026 4.01037 4.09362 4.14469 4.21815 4.25456 4.29906 4.43480 4.47542 4.54477 4.58564 4.64503 4.67921 4.72808 4.76222 4.84026 4.90732 4.92230 4.93958 4.97574 5.02121 5.05559 5.10227 5.15027 5.17146 5.31165 5.32711 5.50811 5.53184 5.58652 5.65721 5.77902 5.90477 6.05715 6.10385 6.29763 6.73762 7.29966 8.87029 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.036725 B = 0.003904 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.245389 B = 7170.557425 C = 7302.275616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.530 5.530 3 C 0.061 3.939 4 C -0.082 4.082 5 C -0.118 4.118 6 C 0.056 3.944 7 N -0.526 5.526 8 C 0.058 3.942 9 C -0.085 4.085 10 C -0.008 4.008 11 C -0.533 4.533 12 H 0.028 0.972 13 C 0.001 3.999 14 N -0.953 5.953 15 Si 0.955 3.045 16 H -0.265 1.265 17 H -0.283 1.283 18 H -0.247 1.247 19 C 0.068 3.932 20 C -0.122 4.122 21 C -0.155 4.155 22 C 0.071 3.929 23 H 0.028 0.972 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.035 0.965 35 H 0.042 0.958 36 H 0.046 0.954 37 H 0.017 0.983 38 H 0.019 0.981 39 H 0.266 0.734 40 H 0.051 0.949 41 H 0.076 0.924 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.469 0.424 21.553 27.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.253 5.253 3 C -0.066 4.066 4 C -0.083 4.083 5 C -0.176 4.176 6 C -0.071 4.071 7 N -0.250 5.250 8 C -0.070 4.070 9 C -0.123 4.123 10 C -0.046 4.046 11 C -0.571 4.571 12 H 0.046 0.954 13 C -0.195 4.195 14 N -0.594 5.594 15 Si 0.777 3.223 16 H -0.190 1.190 17 H -0.209 1.209 18 H -0.170 1.170 19 C -0.060 4.060 20 C -0.124 4.124 21 C -0.212 4.212 22 C -0.057 4.057 23 H 0.046 0.954 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.036 0.964 38 H 0.038 0.962 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.729 0.092 21.998 27.043 hybrid contribution -0.876 0.826 -1.987 2.324 sum -16.605 0.918 20.010 26.019 Atomic orbital electron populations 1.22613 0.87119 1.02594 1.01044 1.65239 1.08746 1.13866 1.37500 1.22563 0.93805 0.89756 1.00465 1.22006 0.95638 0.96317 0.94347 1.21538 0.96950 1.00074 0.98994 1.22667 0.96827 0.94991 0.92581 1.65345 1.50236 1.02938 1.06447 1.22229 0.97711 0.97736 0.89304 1.21241 0.98688 0.98365 0.93974 1.19481 0.95566 0.95934 0.93657 1.21506 1.25488 1.11906 0.98234 0.95380 1.26077 0.95945 1.00996 0.96479 1.70081 1.38984 1.42819 1.07506 0.85597 0.80263 0.79044 0.77353 1.18988 1.20895 1.17011 1.21956 0.93154 0.92792 0.98124 1.21938 0.95597 0.98628 0.96202 1.22385 0.98664 0.99846 1.00297 1.21891 0.98603 0.95490 0.89672 0.95380 0.90801 0.90461 0.89175 0.92258 0.92145 0.91701 0.92980 0.89660 0.92400 0.90690 0.94725 0.93923 0.93492 0.96432 0.96239 0.92479 0.93067 0.90565 0.92791 0.92720 0.91229 0.90239 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.11 127.69 1.16 1.36 16 2 N -0.53 -8.79 5.05 -915.13 -4.62 -13.41 16 3 C 0.06 0.98 5.45 85.16 0.46 1.45 16 4 C -0.08 -1.55 1.06 -51.24 -0.05 -1.60 16 5 C -0.12 -2.32 8.31 71.98 0.60 -1.72 16 6 C 0.06 1.22 5.47 85.19 0.47 1.69 16 7 N -0.53 -14.45 4.91 -887.38 -4.36 -18.81 16 8 C 0.06 1.85 4.38 86.30 0.38 2.23 16 9 C -0.08 -3.44 5.20 30.59 0.16 -3.28 16 10 C -0.01 -0.41 4.04 29.84 0.12 -0.28 16 11 C -0.53 -31.81 9.66 25.60 0.25 -31.56 16 12 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 13 C 0.00 0.08 5.47 84.66 0.46 0.55 16 14 N -0.95 -61.14 13.96 21.45 0.30 -60.84 16 15 Si 0.95 44.92 27.47 68.60 1.88 46.80 16 16 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 17 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 18 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 19 C 0.07 1.75 4.86 84.67 0.41 2.16 16 20 C -0.12 -2.48 1.22 -52.37 -0.06 -2.54 16 21 C -0.16 -3.11 7.39 71.98 0.53 -2.57 16 22 C 0.07 1.29 5.47 84.67 0.46 1.75 16 23 H 0.03 0.37 6.71 -2.39 -0.02 0.35 16 24 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.09 1.33 8.12 -2.39 -0.02 1.31 16 27 H 0.06 0.91 5.87 -2.39 -0.01 0.90 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 1.24 7.01 -2.39 -0.02 1.23 16 30 H 0.05 1.19 6.32 -2.39 -0.02 1.18 16 31 H 0.09 1.78 8.13 -2.39 -0.02 1.76 16 32 H 0.06 1.21 5.87 -2.39 -0.01 1.20 16 33 H 0.07 2.28 8.09 -2.39 -0.02 2.26 16 34 H 0.03 1.07 6.57 -2.39 -0.02 1.05 16 35 H 0.04 1.78 7.03 -2.39 -0.02 1.77 16 36 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.02 0.82 7.20 -2.39 -0.02 0.80 16 38 H 0.02 0.89 7.57 -2.39 -0.02 0.88 16 39 H 0.27 15.86 8.31 -92.70 -0.77 15.09 16 40 H 0.05 1.48 6.65 -2.39 -0.02 1.47 16 41 H 0.08 2.01 7.23 -2.39 -0.02 1.99 16 42 H 0.05 1.21 4.03 -2.39 -0.01 1.20 16 43 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.07 1.21 4.09 -2.39 -0.01 1.20 16 45 H 0.08 1.49 7.78 -2.39 -0.02 1.48 16 46 H 0.07 1.13 7.49 -2.39 -0.02 1.11 16 Total: -1.00 -65.72 328.00 -0.57 -66.29 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.88 Total: 12.35 kcal Atomic # 6 Polarization: -37.73 SS G_CDS: 5.35 Total: -32.38 kcal Atomic # 7 Polarization: -84.38 SS G_CDS: -8.68 Total: -93.06 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.80 kcal Total: -65.72 -0.57 -66.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706258379.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.243 kcal (2) G-P(sol) polarization free energy of solvation -65.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds