Wall clock time and date at job start Mon Mar 30 2020 04:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99694 * 2 1 4 4 C 1.50698 * 109.47269 * 269.99539 * 3 2 1 5 5 H 1.08004 * 119.99478 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00230 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99932 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 119.99844 * 359.97438 * 6 4 3 9 9 H 1.48505 * 109.46965 * 90.00866 * 8 6 4 10 10 H 1.48503 * 109.47064 * 210.00049 * 8 6 4 11 11 H 1.48491 * 109.47334 * 330.00599 * 8 6 4 12 12 C 1.34778 * 120.00391 * 179.97438 * 2 1 3 13 13 O 1.21280 * 119.99988 * 180.02562 * 12 2 1 14 14 C 1.50709 * 119.99645 * 0.02562 * 12 2 1 15 15 N 1.46898 * 109.46571 * 179.97438 * 14 12 2 16 16 C 1.48137 * 111.00014 * 281.04249 * 15 14 12 17 17 C 1.53329 * 85.33049 * 221.37737 * 16 15 14 18 18 H 1.08992 * 110.71474 * 273.26800 * 17 16 15 19 19 C 1.50412 * 115.80403 * 145.41326 * 17 16 15 20 20 C 1.51624 * 114.50502 * 289.84336 * 19 17 16 21 21 C 1.52621 * 110.96396 * 313.31909 * 20 19 17 22 22 C 1.52875 * 108.80438 * 64.00068 * 21 20 19 23 23 C 1.48613 * 110.99557 * 182.04723 * 15 14 12 24 24 H 1.09000 * 115.06078 * 253.54680 * 23 15 14 25 25 H 1.09000 * 109.47509 * 269.99968 * 1 2 3 26 26 H 1.08996 * 109.47347 * 30.00470 * 1 2 3 27 27 H 1.09003 * 109.46712 * 150.00175 * 1 2 3 28 28 H 1.08999 * 109.47323 * 29.99684 * 3 2 1 29 29 H 1.09009 * 109.46925 * 149.99682 * 3 2 1 30 30 H 0.97000 * 119.99965 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.46763 * 59.99706 * 14 12 2 32 32 H 1.08996 * 109.46809 * 299.99482 * 14 12 2 33 33 H 1.09006 * 113.89802 * 107.28299 * 16 15 14 34 34 H 1.09008 * 113.89920 * 335.47681 * 16 15 14 35 35 H 1.09000 * 108.46838 * 168.54996 * 19 17 16 36 36 H 1.08996 * 108.34952 * 51.05831 * 19 17 16 37 37 H 1.08994 * 109.16958 * 73.69141 * 20 19 17 38 38 H 1.09010 * 109.16636 * 192.95424 * 20 19 17 39 39 H 1.08993 * 109.58890 * 183.72598 * 21 20 19 40 40 H 1.08995 * 109.59037 * 304.16848 * 21 20 19 41 41 H 1.08997 * 109.52164 * 176.28560 * 22 21 20 42 42 H 1.09007 * 109.55822 * 56.15526 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1268 2.8775 -1.6727 7 7 3.3465 3.2568 -2.9127 8 14 3.7336 3.9288 -0.2529 9 1 5.1068 3.5071 0.1237 10 1 3.7495 5.3554 -0.6648 11 1 2.8271 3.7596 0.9110 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1671 0.0010 14 6 1.3854 -2.4723 0.0005 15 7 2.3401 -3.5888 0.0005 16 6 2.8865 -3.8201 -1.3568 17 6 2.7228 -5.3098 -1.0326 18 1 3.6035 -5.6908 -0.5157 19 6 2.3437 -6.1937 -2.1890 20 6 0.9278 -5.9959 -2.6940 21 6 -0.0648 -5.9575 -1.5354 22 6 0.2406 -4.7384 -0.6650 23 6 1.6323 -4.8946 -0.0490 24 1 1.6325 -5.4557 0.8855 25 1 -0.3634 0.0000 1.0276 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6083 2.0284 0.5138 29 1 3.1499 1.1385 0.5139 30 1 3.8233 4.0827 -3.0900 31 1 0.7591 -2.5302 -0.8897 32 1 0.7585 -2.5299 0.8903 33 1 3.9234 -3.5053 -1.4751 34 1 2.2379 -3.4691 -2.1597 35 1 2.4587 -7.2331 -1.8813 36 1 3.0337 -5.9994 -3.0101 37 1 0.8721 -5.0569 -3.2445 38 1 0.6677 -6.8179 -3.3612 39 1 -1.0795 -5.8812 -1.9259 40 1 0.0328 -6.8654 -0.9403 41 1 -0.5023 -4.6623 0.1289 42 1 0.2128 -3.8368 -1.2772 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706796860.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:04 Heat of formation + Delta-G solvation = 7.618619 kcal Electronic energy + Delta-G solvation = -21157.376808 eV Core-core repulsion = 18138.722158 eV Total energy + Delta-G solvation = -3018.654649 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.28911 -38.67205 -35.28008 -34.70431 -32.58954 -32.01260 -29.88278 -28.26645 -26.48356 -25.80075 -24.78765 -22.85521 -21.84136 -20.91037 -18.45155 -17.80485 -16.94273 -16.62904 -16.43965 -15.64901 -15.19866 -14.88783 -14.71422 -14.08934 -13.95316 -13.71625 -13.31261 -12.72935 -12.70870 -12.47013 -12.26636 -12.03525 -11.97129 -11.87764 -11.59376 -11.44284 -11.15321 -10.94465 -10.85339 -10.65131 -10.49957 -10.15174 -10.10290 -9.99852 -9.52371 -8.99494 -8.57140 -8.43332 -7.64345 -6.07273 -4.05703 3.30988 3.36956 3.39240 3.42824 3.65376 4.12516 4.37292 4.41645 4.47320 4.75867 4.88634 4.94602 5.03071 5.09866 5.16895 5.26947 5.30206 5.39766 5.46021 5.48801 5.59291 5.64535 5.71637 5.76946 5.81455 5.86165 5.91196 5.98139 6.07097 6.11907 6.15980 6.19722 6.35298 6.46647 6.72135 6.96401 7.10476 7.40075 7.63582 8.30980 8.49406 8.94873 9.08334 9.53578 11.06218 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031144 B = 0.004558 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.822240 B = 6141.505113 C = 6296.716992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.603 5.603 3 C 0.217 3.783 4 C -0.527 4.527 5 H 0.073 0.927 6 C 0.072 3.928 7 N -0.899 5.899 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.508 3.492 13 O -0.523 6.523 14 C -0.003 4.003 15 N -0.455 5.455 16 C 0.014 3.986 17 C -0.107 4.107 18 H 0.092 0.908 19 C -0.107 4.107 20 C -0.119 4.119 21 C -0.113 4.113 22 C -0.142 4.142 23 C 0.037 3.963 24 H 0.098 0.902 25 H 0.044 0.956 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.029 0.971 29 H 0.036 0.964 30 H 0.264 0.736 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.048 -18.341 4.072 20.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.096 3.904 4 C -0.566 4.566 5 H 0.091 0.909 6 C -0.130 4.130 7 N -0.537 5.537 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.294 3.706 13 O -0.399 6.399 14 C -0.134 4.134 15 N -0.176 5.176 16 C -0.115 4.115 17 C -0.126 4.126 18 H 0.110 0.890 19 C -0.145 4.145 20 C -0.157 4.157 21 C -0.151 4.151 22 C -0.180 4.180 23 C -0.072 4.072 24 H 0.116 0.884 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.853 -17.981 4.533 20.138 hybrid contribution -0.380 0.728 -0.067 0.824 sum -8.232 -17.253 4.466 19.631 Atomic orbital electron populations 1.21634 0.81203 1.02765 1.00351 1.47843 1.06106 1.07101 1.72560 1.19635 0.92470 0.80051 0.98259 1.21328 1.36883 1.07072 0.91286 0.90925 1.24858 0.95224 0.97367 0.95587 1.69899 1.41585 1.23596 1.18667 0.86836 0.80175 0.79669 0.82928 1.19882 1.21085 1.19073 1.20175 0.88221 0.84638 0.77611 1.90662 1.13699 1.86895 1.48604 1.22747 0.95921 0.92028 1.02735 1.68810 1.22766 0.99649 1.26422 1.23905 1.02537 0.94277 0.90789 1.22047 0.98854 0.95499 0.96198 0.88971 1.20567 0.96785 0.99433 0.97749 1.21183 0.94747 1.01991 0.97758 1.21321 0.98756 0.98121 0.96875 1.22068 0.96538 0.99456 0.99946 1.23358 0.92489 0.92598 0.98797 0.88377 0.93709 0.90589 0.92513 0.95321 0.94590 0.92592 0.90818 0.88681 0.88902 0.91477 0.92236 0.91606 0.92133 0.91909 0.91878 0.91785 0.91210 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.24 59.85 0.61 1.93 16 2 N -0.60 -12.79 2.86 -182.95 -0.52 -13.31 16 3 C 0.22 5.45 4.23 -5.19 -0.02 5.43 16 4 C -0.53 -15.42 9.94 -34.44 -0.34 -15.77 16 5 H 0.07 2.32 8.06 -52.48 -0.42 1.90 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.90 -28.05 13.96 55.43 0.77 -27.27 16 8 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 9 H -0.27 -6.91 7.11 56.52 0.40 -6.50 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 12 C 0.51 10.80 7.57 -10.98 -0.08 10.71 16 13 O -0.52 -13.50 15.59 5.56 0.09 -13.42 16 14 C 0.00 -0.04 3.01 -4.97 -0.01 -0.06 16 15 N -0.46 -7.00 5.81 -240.48 -1.40 -8.39 16 16 C 0.01 0.20 6.57 -2.98 -0.02 0.18 16 17 C -0.11 -1.21 3.82 -92.14 -0.35 -1.56 16 18 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 19 C -0.11 -0.99 5.50 -28.72 -0.16 -1.15 16 20 C -0.12 -1.03 5.79 -27.62 -0.16 -1.19 16 21 C -0.11 -0.92 5.89 -26.99 -0.16 -1.08 16 22 C -0.14 -1.36 4.54 -26.80 -0.12 -1.48 16 23 C 0.04 0.42 4.72 -66.98 -0.32 0.10 16 24 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 1.22 8.07 -51.93 -0.42 0.81 16 27 H 0.06 0.73 6.44 -51.93 -0.33 0.39 16 28 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 29 H 0.04 0.97 6.85 -51.92 -0.36 0.62 16 30 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 31 H 0.07 1.03 4.37 -51.93 -0.23 0.81 16 32 H 0.10 1.27 8.11 -51.93 -0.42 0.85 16 33 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.07 0.99 7.14 -51.92 -0.37 0.62 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.58 7.99 -51.93 -0.41 0.17 16 38 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.82 4.76 -51.93 -0.25 0.57 16 LS Contribution 322.36 15.07 4.86 4.86 Total: -1.00 -34.51 322.36 -9.08 -43.59 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -6.98 Total: -1.44 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -1.23 Total: -1.91 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -1.15 Total: -48.98 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.09 Total: -13.42 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.51 -9.08 -43.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706796860.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.210 kcal (2) G-P(sol) polarization free energy of solvation -34.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds