Wall clock time and date at job start Mon Mar 30 2020 04:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99694 * 2 1 4 4 C 1.50698 * 109.47269 * 269.99539 * 3 2 1 5 5 H 1.08004 * 119.99478 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00230 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99932 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 119.99844 * 359.97438 * 6 4 3 9 9 H 1.48505 * 109.46965 * 90.00866 * 8 6 4 10 10 H 1.48503 * 109.47064 * 210.00049 * 8 6 4 11 11 H 1.48491 * 109.47334 * 330.00599 * 8 6 4 12 12 C 1.34778 * 120.00391 * 179.97438 * 2 1 3 13 13 O 1.21280 * 119.99988 * 180.02562 * 12 2 1 14 14 C 1.50709 * 119.99645 * 0.02562 * 12 2 1 15 15 N 1.46898 * 109.46571 * 179.97438 * 14 12 2 16 16 C 1.48137 * 111.00014 * 281.04249 * 15 14 12 17 17 C 1.53329 * 85.33049 * 221.37737 * 16 15 14 18 18 H 1.08992 * 110.71474 * 273.26800 * 17 16 15 19 19 C 1.50412 * 115.80403 * 145.41326 * 17 16 15 20 20 C 1.51624 * 114.50502 * 289.84336 * 19 17 16 21 21 C 1.52621 * 110.96396 * 313.31909 * 20 19 17 22 22 C 1.52875 * 108.80438 * 64.00068 * 21 20 19 23 23 C 1.48613 * 110.99557 * 182.04723 * 15 14 12 24 24 H 1.09000 * 115.06078 * 253.54680 * 23 15 14 25 25 H 1.09000 * 109.47509 * 269.99968 * 1 2 3 26 26 H 1.08996 * 109.47347 * 30.00470 * 1 2 3 27 27 H 1.09003 * 109.46712 * 150.00175 * 1 2 3 28 28 H 1.08999 * 109.47323 * 29.99684 * 3 2 1 29 29 H 1.09009 * 109.46925 * 149.99682 * 3 2 1 30 30 H 0.97000 * 119.99965 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.46763 * 59.99706 * 14 12 2 32 32 H 1.08996 * 109.46809 * 299.99482 * 14 12 2 33 33 H 1.09006 * 113.89802 * 107.28299 * 16 15 14 34 34 H 1.09008 * 113.89920 * 335.47681 * 16 15 14 35 35 H 1.09000 * 108.46838 * 168.54996 * 19 17 16 36 36 H 1.08996 * 108.34952 * 51.05831 * 19 17 16 37 37 H 1.08994 * 109.16958 * 73.69141 * 20 19 17 38 38 H 1.09010 * 109.16636 * 192.95424 * 20 19 17 39 39 H 1.08993 * 109.58890 * 183.72598 * 21 20 19 40 40 H 1.08995 * 109.59037 * 304.16848 * 21 20 19 41 41 H 1.08997 * 109.52164 * 176.28560 * 22 21 20 42 42 H 1.09007 * 109.55822 * 56.15526 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1268 2.8775 -1.6727 7 7 3.3465 3.2568 -2.9127 8 14 3.7336 3.9288 -0.2529 9 1 5.1068 3.5071 0.1237 10 1 3.7495 5.3554 -0.6648 11 1 2.8271 3.7596 0.9110 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1671 0.0010 14 6 1.3854 -2.4723 0.0005 15 7 2.3401 -3.5888 0.0005 16 6 2.8865 -3.8201 -1.3568 17 6 2.7228 -5.3098 -1.0326 18 1 3.6035 -5.6908 -0.5157 19 6 2.3437 -6.1937 -2.1890 20 6 0.9278 -5.9959 -2.6940 21 6 -0.0648 -5.9575 -1.5354 22 6 0.2406 -4.7384 -0.6650 23 6 1.6323 -4.8946 -0.0490 24 1 1.6325 -5.4557 0.8855 25 1 -0.3634 0.0000 1.0276 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6083 2.0284 0.5138 29 1 3.1499 1.1385 0.5139 30 1 3.8233 4.0827 -3.0900 31 1 0.7591 -2.5302 -0.8897 32 1 0.7585 -2.5299 0.8903 33 1 3.9234 -3.5053 -1.4751 34 1 2.2379 -3.4691 -2.1597 35 1 2.4587 -7.2331 -1.8813 36 1 3.0337 -5.9994 -3.0101 37 1 0.8721 -5.0569 -3.2445 38 1 0.6677 -6.8179 -3.3612 39 1 -1.0795 -5.8812 -1.9259 40 1 0.0328 -6.8654 -0.9403 41 1 -0.5023 -4.6623 0.1289 42 1 0.2128 -3.8368 -1.2772 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706796860.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:04 Heat of formation + Delta-G solvation = -17.859812 kcal Electronic energy + Delta-G solvation = -21158.481636 eV Core-core repulsion = 18138.722158 eV Total energy + Delta-G solvation = -3019.759477 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.32273 -40.28441 -36.65835 -35.96695 -34.73348 -32.99977 -31.26087 -29.86463 -27.55888 -27.20180 -26.00309 -24.40595 -22.95354 -21.96912 -19.93878 -19.17214 -18.79328 -18.02605 -17.41731 -17.17327 -16.57939 -16.34106 -15.96606 -15.51131 -15.15340 -14.73766 -14.53222 -14.42856 -13.98282 -13.74179 -13.65593 -13.54120 -13.25650 -13.07042 -12.83993 -12.77294 -12.50044 -12.39542 -12.06739 -12.00519 -11.78520 -11.75606 -11.48650 -11.00450 -10.85792 -10.82533 -10.62339 -9.59293 -9.39175 -8.36740 -6.41818 1.30406 1.35088 1.43455 1.80857 2.22788 2.29031 2.97197 2.98320 3.41159 3.59284 3.76082 3.92023 4.07559 4.15201 4.21374 4.23116 4.31647 4.39294 4.42407 4.51030 4.64430 4.68543 4.73761 4.79583 4.84951 4.91925 4.93746 4.94278 5.04677 5.11937 5.19550 5.29329 5.36329 5.40082 5.42947 5.44068 5.56967 5.60874 6.00665 6.22482 6.58718 6.70903 7.19533 7.45523 8.80374 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031144 B = 0.004558 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.822240 B = 6141.505113 C = 6296.716992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.611 5.611 3 C 0.224 3.776 4 C -0.536 4.536 5 H 0.026 0.974 6 C 0.011 3.989 7 N -0.946 5.946 8 Si 0.949 3.051 9 H -0.278 1.278 10 H -0.272 1.272 11 H -0.238 1.238 12 C 0.494 3.506 13 O -0.583 6.583 14 C 0.013 3.987 15 N -0.485 5.485 16 C 0.004 3.996 17 C -0.093 4.093 18 H 0.088 0.912 19 C -0.105 4.105 20 C -0.120 4.120 21 C -0.108 4.108 22 C -0.140 4.140 23 C 0.047 3.953 24 H 0.114 0.886 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.051 0.949 29 H 0.014 0.986 30 H 0.269 0.731 31 H 0.093 0.907 32 H 0.127 0.873 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.044 0.956 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.353 -19.779 6.058 23.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.344 5.344 3 C 0.102 3.898 4 C -0.574 4.574 5 H 0.044 0.956 6 C -0.187 4.187 7 N -0.586 5.586 8 Si 0.772 3.228 9 H -0.204 1.204 10 H -0.197 1.197 11 H -0.161 1.161 12 C 0.283 3.717 13 O -0.462 6.462 14 C -0.118 4.118 15 N -0.207 5.207 16 C -0.125 4.125 17 C -0.112 4.112 18 H 0.106 0.894 19 C -0.143 4.143 20 C -0.158 4.158 21 C -0.146 4.146 22 C -0.178 4.178 23 C -0.061 4.061 24 H 0.132 0.868 25 H 0.099 0.901 26 H 0.085 0.915 27 H 0.105 0.895 28 H 0.069 0.931 29 H 0.032 0.968 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.145 0.855 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.229 -19.442 6.525 22.917 hybrid contribution 0.341 1.121 -0.774 1.404 sum -9.888 -18.321 5.751 21.599 Atomic orbital electron populations 1.21966 0.77586 1.03890 1.03014 1.47991 1.08465 1.05858 1.72072 1.19307 0.92640 0.82612 0.95268 1.21544 1.36863 1.06703 0.92320 0.95559 1.25859 0.95214 0.98948 0.98673 1.70049 1.42714 1.24530 1.21275 0.85698 0.79485 0.77808 0.79847 1.20399 1.19711 1.16097 1.21309 0.87999 0.86413 0.75984 1.90624 1.16500 1.87901 1.51225 1.22704 0.95387 0.88778 1.04938 1.68774 1.24219 1.01339 1.26377 1.23831 1.00299 0.97417 0.90930 1.21974 0.99070 0.93193 0.96932 0.89350 1.20561 0.97274 0.99852 0.96646 1.21209 0.94459 1.01809 0.98317 1.21314 0.99073 0.97872 0.96342 1.22073 0.95625 0.99577 1.00486 1.23477 0.93144 0.89959 0.99486 0.86816 0.90072 0.91496 0.89515 0.93095 0.96758 0.92223 0.89015 0.85513 0.92640 0.92044 0.90275 0.92233 0.93749 0.90330 0.90614 0.90427 0.89200 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.22 10.24 127.77 1.31 3.53 16 2 N -0.61 -25.73 2.86 -851.12 -2.43 -28.16 16 3 C 0.22 11.35 4.23 85.63 0.36 11.71 16 4 C -0.54 -32.45 9.94 25.60 0.25 -32.19 16 5 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 6 C 0.01 0.66 5.47 84.65 0.46 1.13 16 7 N -0.95 -60.89 13.96 21.45 0.30 -60.60 16 8 Si 0.95 45.59 27.47 68.60 1.88 47.48 16 9 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16 12 C 0.49 21.23 7.57 87.66 0.66 21.89 16 13 O -0.58 -31.45 15.59 -3.03 -0.05 -31.50 16 14 C 0.01 0.38 3.01 85.56 0.26 0.64 16 15 N -0.48 -14.65 5.81 -914.75 -5.31 -19.97 16 16 C 0.00 0.13 6.57 86.17 0.57 0.70 16 17 C -0.09 -2.02 3.82 -11.58 -0.04 -2.06 16 18 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 19 C -0.11 -1.78 5.50 29.31 0.16 -1.62 16 20 C -0.12 -1.81 5.79 30.02 0.17 -1.64 16 21 C -0.11 -1.37 5.89 30.43 0.18 -1.19 16 22 C -0.14 -2.20 4.54 30.55 0.14 -2.06 16 23 C 0.05 0.96 4.72 44.44 0.21 1.17 16 24 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.07 2.05 8.07 -2.39 -0.02 2.03 16 27 H 0.09 1.95 6.44 -2.39 -0.02 1.94 16 28 H 0.05 2.34 7.13 -2.39 -0.02 2.33 16 29 H 0.01 0.79 6.85 -2.38 -0.02 0.77 16 30 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 31 H 0.09 2.40 4.37 -2.39 -0.01 2.39 16 32 H 0.13 2.92 8.11 -2.39 -0.02 2.90 16 33 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.06 1.92 7.14 -2.38 -0.02 1.90 16 35 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.04 0.81 7.99 -2.39 -0.02 0.79 16 38 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.08 0.81 8.14 -2.39 -0.02 0.80 16 40 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.06 1.17 4.76 -2.38 -0.01 1.16 16 Total: -1.00 -80.21 322.36 0.02 -80.19 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.93 Total: 12.55 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 4.69 Total: 0.01 kcal Atomic # 7 Polarization: -101.28 SS G_CDS: -7.45 Total: -108.72 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -0.05 Total: -31.50 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.88 Total: 47.48 kcal Total: -80.21 0.02 -80.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706796860.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.330 kcal (2) G-P(sol) polarization free energy of solvation -80.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds