Wall clock time and date at job start Mon Mar 30 2020 04:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.46494 * 119.99868 * 2 1 4 4 C 1.50698 * 109.47439 * 269.99878 * 3 2 1 5 5 H 1.08011 * 119.99631 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00479 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99845 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00392 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46666 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47506 * 119.99481 * 8 6 4 11 11 H 1.48503 * 109.47080 * 240.00108 * 8 6 4 12 12 C 1.34774 * 119.99410 * 179.97438 * 2 1 3 13 13 O 1.21291 * 119.99317 * 180.02562 * 12 2 1 14 14 C 1.50692 * 120.00558 * 0.02562 * 12 2 1 15 15 N 1.46907 * 109.47389 * 179.97438 * 14 12 2 16 16 C 1.45900 * 110.91600 * 97.00305 * 15 14 12 17 17 C 1.53328 * 86.09435 * 138.67961 * 16 15 14 18 18 H 1.09002 * 111.42427 * 86.42678 * 17 16 15 19 19 C 1.50413 * 115.80453 * 214.93058 * 17 16 15 20 20 C 1.51619 * 114.50681 * 70.13551 * 19 17 16 21 21 C 1.52625 * 110.99354 * 46.72574 * 20 19 17 22 22 C 1.52981 * 108.75640 * 296.02093 * 21 20 19 23 23 C 1.48610 * 111.00017 * 196.00926 * 15 14 12 24 24 H 1.09008 * 115.05734 * 106.44802 * 23 15 14 25 25 H 1.08991 * 109.46848 * 270.00304 * 1 2 3 26 26 H 1.09003 * 109.46357 * 29.99990 * 1 2 3 27 27 H 1.09001 * 109.46752 * 149.99821 * 1 2 3 28 28 H 1.09003 * 109.47372 * 29.99786 * 3 2 1 29 29 H 1.09002 * 109.46814 * 149.99709 * 3 2 1 30 30 H 0.97006 * 120.00333 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47414 * 59.99794 * 14 12 2 32 32 H 1.09002 * 109.47170 * 299.99853 * 14 12 2 33 33 H 1.09006 * 113.92534 * 24.23263 * 16 15 14 34 34 H 1.09004 * 113.23675 * 253.04178 * 16 15 14 35 35 H 1.09000 * 108.47475 * 191.44164 * 19 17 16 36 36 H 1.09000 * 108.47575 * 309.00071 * 19 17 16 37 37 H 1.08994 * 109.17600 * 167.11295 * 20 19 17 38 38 H 1.09000 * 109.17858 * 286.33800 * 20 19 17 39 39 H 1.08997 * 109.59710 * 55.80660 * 21 20 19 40 40 H 1.09000 * 109.59035 * 176.24528 * 21 20 19 41 41 H 1.09001 * 109.50019 * 183.68349 * 22 21 20 42 42 H 1.08990 * 109.50651 * 303.76938 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7038 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.5542 3.6175 -0.6731 8 14 3.4377 3.4171 -3.4339 9 1 2.8598 2.4170 -4.3672 10 1 2.8006 4.7381 -3.6666 11 1 4.9002 3.5246 -3.6679 12 6 2.1389 -1.1672 0.0005 13 8 3.3518 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 7 2.3400 -3.5889 0.0005 16 6 2.5521 -4.0928 1.3532 17 6 2.5103 -5.4914 0.7262 18 1 3.4921 -5.7940 0.3621 19 6 1.8851 -6.5686 1.5695 20 6 0.3846 -6.4394 1.7440 21 6 -0.2996 -6.1642 0.4077 22 6 0.1772 -4.8094 -0.1193 23 6 1.6724 -4.8603 -0.3821 24 1 1.9063 -5.2214 -1.3837 25 1 -0.3633 0.0001 1.0276 26 1 -0.3632 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6085 2.0284 0.5138 29 1 3.1499 1.1383 0.5139 30 1 4.0311 4.4435 -0.8504 31 1 0.7590 -2.5302 -0.8897 32 1 0.7584 -2.5298 0.8903 33 1 1.7263 -3.8898 2.0352 34 1 3.5245 -3.8226 1.7652 35 1 2.0977 -7.5339 1.1101 36 1 2.3483 -6.5474 2.5560 37 1 -0.0082 -7.3656 2.1631 38 1 0.1732 -5.6191 2.4299 39 1 -0.0378 -6.9462 -0.3050 40 1 -1.3803 -6.1417 0.5482 41 1 -0.3530 -4.5705 -1.0412 42 1 -0.0218 -4.0388 0.6253 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706796861.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:06 Heat of formation + Delta-G solvation = 0.791397 kcal Electronic energy + Delta-G solvation = -20987.224488 eV Core-core repulsion = 17968.273788 eV Total energy + Delta-G solvation = -3018.950700 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.44149 -38.54287 -35.35854 -34.59624 -32.62294 -32.02648 -29.79677 -27.79182 -26.57342 -25.67182 -24.73122 -23.06792 -21.97868 -21.02794 -18.38955 -17.83178 -16.62626 -16.56377 -16.34284 -15.60586 -15.17780 -14.85237 -14.68578 -14.29876 -13.88399 -13.70426 -13.49661 -12.79017 -12.57263 -12.29790 -12.14681 -12.08095 -11.81570 -11.73488 -11.62187 -11.21158 -11.15786 -10.96163 -10.78892 -10.73500 -10.55090 -10.18791 -10.10284 -10.04431 -9.54899 -8.94972 -8.39406 -8.36567 -7.54931 -5.99718 -4.04074 3.32930 3.40285 3.44206 3.55527 3.69757 4.18239 4.32073 4.43148 4.50031 4.73619 4.83957 4.90014 4.98573 5.13402 5.23572 5.27952 5.35007 5.40901 5.41125 5.43304 5.51840 5.66380 5.69517 5.74036 5.77386 5.82779 5.89421 5.94590 5.99486 6.06197 6.11064 6.22385 6.31069 6.48594 7.01082 7.20637 7.50538 7.62963 7.97635 8.29322 8.51534 8.97102 9.24141 9.61221 11.08375 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.036772 B = 0.004102 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.261057 B = 6825.008412 C = 6916.423144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.608 5.608 3 C 0.246 3.754 4 C -0.523 4.523 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.505 3.495 13 O -0.521 6.521 14 C 0.003 3.997 15 N -0.450 5.450 16 C 0.009 3.991 17 C -0.105 4.105 18 H 0.094 0.906 19 C -0.107 4.107 20 C -0.118 4.118 21 C -0.113 4.113 22 C -0.138 4.138 23 C 0.036 3.964 24 H 0.097 0.903 25 H 0.041 0.959 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.031 0.969 29 H 0.043 0.957 30 H 0.262 0.738 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.174 -19.672 4.642 22.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.342 5.342 3 C 0.127 3.873 4 C -0.562 4.562 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.290 3.710 13 O -0.396 6.396 14 C -0.129 4.129 15 N -0.171 5.171 16 C -0.120 4.120 17 C -0.124 4.124 18 H 0.112 0.888 19 C -0.145 4.145 20 C -0.156 4.156 21 C -0.151 4.151 22 C -0.176 4.176 23 C -0.073 4.073 24 H 0.115 0.885 25 H 0.060 0.940 26 H 0.092 0.908 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.112 0.888 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.848 -19.191 4.298 21.565 hybrid contribution -0.667 0.373 -0.572 0.954 sum -9.515 -18.818 3.726 21.414 Atomic orbital electron populations 1.21599 0.81806 1.02387 1.00126 1.48175 1.05939 1.07828 1.72301 1.19251 0.92511 0.78095 0.97432 1.21493 1.36219 1.06120 0.92401 0.92458 1.24939 0.95396 0.96432 0.97418 1.69947 1.38591 1.14356 1.30638 0.86443 0.78095 0.78221 0.84666 1.19816 1.21004 1.20866 1.20162 0.88281 0.84559 0.77963 1.90664 1.13668 1.86835 1.48458 1.22685 0.95265 0.92573 1.02332 1.68206 1.33324 1.00605 1.14969 1.23641 1.02503 0.93924 0.91960 1.22029 1.00083 0.94273 0.96013 0.88766 1.20565 0.95434 0.98464 1.00034 1.21176 0.95293 1.01596 0.97494 1.21343 0.99578 0.97075 0.97113 1.21833 0.95439 0.98439 1.01937 1.23169 0.92633 0.91583 0.99947 0.88540 0.94004 0.90792 0.92811 0.95137 0.93938 0.92831 0.88770 0.91476 0.91708 0.89354 0.92134 0.91688 0.91932 0.92297 0.91704 0.91831 0.91086 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.38 10.24 59.85 0.61 2.00 16 2 N -0.61 -13.44 2.86 -182.95 -0.52 -13.97 16 3 C 0.25 6.68 5.16 -5.20 -0.03 6.66 16 4 C -0.52 -15.34 9.39 -34.44 -0.32 -15.67 16 5 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 8 Si 0.90 22.42 29.54 -169.99 -5.02 17.40 16 9 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 12 C 0.51 11.13 7.74 -10.99 -0.09 11.04 16 13 O -0.52 -14.04 16.01 5.55 0.09 -13.95 16 14 C 0.00 0.05 2.82 -4.98 -0.01 0.03 16 15 N -0.45 -7.03 5.62 -243.67 -1.37 -8.40 16 16 C 0.01 0.12 7.09 -4.41 -0.03 0.09 16 17 C -0.11 -1.12 3.90 -92.15 -0.36 -1.48 16 18 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 19 C -0.11 -0.88 5.50 -28.72 -0.16 -1.04 16 20 C -0.12 -0.89 5.79 -27.62 -0.16 -1.05 16 21 C -0.11 -0.86 5.92 -26.93 -0.16 -1.02 16 22 C -0.14 -1.30 4.26 -27.30 -0.12 -1.41 16 23 C 0.04 0.41 4.58 -67.75 -0.31 0.10 16 24 H 0.10 1.11 8.14 -51.92 -0.42 0.69 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 27 H 0.05 0.71 6.44 -51.93 -0.33 0.37 16 28 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 29 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.09 1.36 6.68 -51.93 -0.35 1.01 16 32 H 0.07 0.91 5.81 -51.93 -0.30 0.60 16 33 H 0.06 0.78 6.88 -51.93 -0.36 0.42 16 34 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.47 7.98 -51.93 -0.41 0.06 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 42 H 0.07 0.70 5.12 -51.93 -0.27 0.43 16 LS Contribution 326.48 15.07 4.92 4.92 Total: -1.00 -34.48 326.48 -9.41 -43.89 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -7.02 Total: -3.26 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -1.23 Total: -0.10 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -1.16 Total: -48.89 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.09 Total: -13.95 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.48 -9.41 -43.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706796861.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.678 kcal (2) G-P(sol) polarization free energy of solvation -34.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds