Wall clock time and date at job start Mon Mar 30 2020 04:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.46494 * 119.99868 * 2 1 4 4 C 1.50698 * 109.47439 * 269.99878 * 3 2 1 5 5 H 1.08011 * 119.99631 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00479 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99845 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00392 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46666 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47506 * 119.99481 * 8 6 4 11 11 H 1.48503 * 109.47080 * 240.00108 * 8 6 4 12 12 C 1.34774 * 119.99410 * 179.97438 * 2 1 3 13 13 O 1.21291 * 119.99317 * 180.02562 * 12 2 1 14 14 C 1.50692 * 120.00558 * 0.02562 * 12 2 1 15 15 N 1.46907 * 109.47389 * 179.97438 * 14 12 2 16 16 C 1.45900 * 110.91600 * 97.00305 * 15 14 12 17 17 C 1.53328 * 86.09435 * 138.67961 * 16 15 14 18 18 H 1.09002 * 111.42427 * 86.42678 * 17 16 15 19 19 C 1.50413 * 115.80453 * 214.93058 * 17 16 15 20 20 C 1.51619 * 114.50681 * 70.13551 * 19 17 16 21 21 C 1.52625 * 110.99354 * 46.72574 * 20 19 17 22 22 C 1.52981 * 108.75640 * 296.02093 * 21 20 19 23 23 C 1.48610 * 111.00017 * 196.00926 * 15 14 12 24 24 H 1.09008 * 115.05734 * 106.44802 * 23 15 14 25 25 H 1.08991 * 109.46848 * 270.00304 * 1 2 3 26 26 H 1.09003 * 109.46357 * 29.99990 * 1 2 3 27 27 H 1.09001 * 109.46752 * 149.99821 * 1 2 3 28 28 H 1.09003 * 109.47372 * 29.99786 * 3 2 1 29 29 H 1.09002 * 109.46814 * 149.99709 * 3 2 1 30 30 H 0.97006 * 120.00333 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47414 * 59.99794 * 14 12 2 32 32 H 1.09002 * 109.47170 * 299.99853 * 14 12 2 33 33 H 1.09006 * 113.92534 * 24.23263 * 16 15 14 34 34 H 1.09004 * 113.23675 * 253.04178 * 16 15 14 35 35 H 1.09000 * 108.47475 * 191.44164 * 19 17 16 36 36 H 1.09000 * 108.47575 * 309.00071 * 19 17 16 37 37 H 1.08994 * 109.17600 * 167.11295 * 20 19 17 38 38 H 1.09000 * 109.17858 * 286.33800 * 20 19 17 39 39 H 1.08997 * 109.59710 * 55.80660 * 21 20 19 40 40 H 1.09000 * 109.59035 * 176.24528 * 21 20 19 41 41 H 1.09001 * 109.50019 * 183.68349 * 22 21 20 42 42 H 1.08990 * 109.50651 * 303.76938 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7038 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.5542 3.6175 -0.6731 8 14 3.4377 3.4171 -3.4339 9 1 2.8598 2.4170 -4.3672 10 1 2.8006 4.7381 -3.6666 11 1 4.9002 3.5246 -3.6679 12 6 2.1389 -1.1672 0.0005 13 8 3.3518 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 7 2.3400 -3.5889 0.0005 16 6 2.5521 -4.0928 1.3532 17 6 2.5103 -5.4914 0.7262 18 1 3.4921 -5.7940 0.3621 19 6 1.8851 -6.5686 1.5695 20 6 0.3846 -6.4394 1.7440 21 6 -0.2996 -6.1642 0.4077 22 6 0.1772 -4.8094 -0.1193 23 6 1.6724 -4.8603 -0.3821 24 1 1.9063 -5.2214 -1.3837 25 1 -0.3633 0.0001 1.0276 26 1 -0.3632 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6085 2.0284 0.5138 29 1 3.1499 1.1383 0.5139 30 1 4.0311 4.4435 -0.8504 31 1 0.7590 -2.5302 -0.8897 32 1 0.7584 -2.5298 0.8903 33 1 1.7263 -3.8898 2.0352 34 1 3.5245 -3.8226 1.7652 35 1 2.0977 -7.5339 1.1101 36 1 2.3483 -6.5474 2.5560 37 1 -0.0082 -7.3656 2.1631 38 1 0.1732 -5.6191 2.4299 39 1 -0.0378 -6.9462 -0.3050 40 1 -1.3803 -6.1417 0.5482 41 1 -0.3530 -4.5705 -1.0412 42 1 -0.0218 -4.0388 0.6253 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706796861.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:05 Heat of formation + Delta-G solvation = -23.782894 kcal Electronic energy + Delta-G solvation = -20988.290110 eV Core-core repulsion = 17968.273788 eV Total energy + Delta-G solvation = -3020.016321 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.42406 -40.23773 -36.58974 -36.02998 -34.74826 -32.94245 -31.03031 -29.52868 -27.61163 -27.18795 -25.95821 -24.67812 -23.01704 -21.97861 -19.91503 -18.75970 -18.69678 -17.99046 -17.42038 -17.14069 -16.60603 -16.28664 -15.89599 -15.75857 -14.88022 -14.85899 -14.50033 -14.19207 -13.89739 -13.75523 -13.53655 -13.46494 -13.16746 -12.93964 -12.87033 -12.72331 -12.57487 -12.39578 -12.22069 -11.94771 -11.83710 -11.67599 -11.49672 -10.97759 -10.81573 -10.66479 -10.57345 -9.56659 -9.39553 -8.23812 -6.39041 1.34430 1.37600 1.49420 1.87124 2.25152 2.40299 3.03848 3.05622 3.40347 3.59207 3.84558 3.96152 4.10028 4.15965 4.20139 4.24672 4.32833 4.42407 4.46164 4.48061 4.69361 4.71792 4.73894 4.85019 4.92404 4.93437 5.00149 5.06622 5.13525 5.20113 5.22360 5.33161 5.39075 5.44104 5.49585 5.55325 5.58154 5.83954 6.05296 6.08545 6.69473 6.81790 7.27741 7.54824 8.83451 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.036772 B = 0.004102 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.261057 B = 6825.008412 C = 6916.423144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.615 5.615 3 C 0.260 3.740 4 C -0.543 4.543 5 H 0.051 0.949 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.970 3.030 9 H -0.268 1.268 10 H -0.266 1.266 11 H -0.282 1.282 12 C 0.492 3.508 13 O -0.585 6.585 14 C 0.023 3.977 15 N -0.495 5.495 16 C 0.006 3.994 17 C -0.092 4.092 18 H 0.083 0.917 19 C -0.104 4.104 20 C -0.118 4.118 21 C -0.109 4.109 22 C -0.135 4.135 23 C 0.042 3.958 24 H 0.095 0.905 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.092 0.908 28 H 0.024 0.976 29 H -0.007 1.007 30 H 0.267 0.733 31 H 0.115 0.885 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.667 -21.417 3.852 25.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.348 5.348 3 C 0.139 3.861 4 C -0.581 4.581 5 H 0.070 0.930 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.192 1.192 10 H -0.191 1.191 11 H -0.208 1.208 12 C 0.280 3.720 13 O -0.465 6.465 14 C -0.108 4.108 15 N -0.216 5.216 16 C -0.124 4.124 17 C -0.111 4.111 18 H 0.101 0.899 19 C -0.142 4.142 20 C -0.155 4.155 21 C -0.147 4.147 22 C -0.173 4.173 23 C -0.066 4.066 24 H 0.113 0.887 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.110 0.890 28 H 0.042 0.958 29 H 0.011 0.989 30 H 0.076 0.924 31 H 0.133 0.867 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.406 -20.958 3.516 24.118 hybrid contribution 0.140 0.910 -0.281 0.962 sum -11.266 -20.048 3.235 23.223 Atomic orbital electron populations 1.21922 0.77907 1.03956 1.02516 1.48227 1.08393 1.06289 1.71896 1.18717 0.90962 0.80479 0.95985 1.21738 1.36845 1.06508 0.93030 0.93046 1.25891 0.94821 0.96399 1.02165 1.70061 1.38976 1.14838 1.33040 0.85336 0.77894 0.78447 0.78922 1.19191 1.19078 1.20766 1.21392 0.88029 0.86369 0.76171 1.90622 1.16713 1.87908 1.51249 1.22578 0.94656 0.89039 1.04555 1.68134 1.34870 1.02087 1.16550 1.23663 1.01619 0.95614 0.91461 1.21925 0.99828 0.93661 0.95642 0.89883 1.20550 0.96152 0.97775 0.99681 1.21193 0.94402 1.02339 0.97564 1.21336 1.00379 0.95947 0.97018 1.21831 0.93453 0.99648 1.02416 1.23262 0.94224 0.89083 1.00079 0.88726 0.91118 0.91492 0.88990 0.95799 0.98875 0.92367 0.86729 0.88429 0.90207 0.92103 0.90959 0.91362 0.90336 0.92615 0.91216 0.90375 0.90216 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.40 10.24 127.77 1.31 3.71 16 2 N -0.62 -27.46 2.86 -851.13 -2.43 -29.89 16 3 C 0.26 14.73 5.16 85.63 0.44 15.17 16 4 C -0.54 -32.63 9.39 25.60 0.24 -32.39 16 5 H 0.05 3.07 7.81 -2.90 -0.02 3.05 16 6 C 0.01 0.36 5.46 84.65 0.46 0.82 16 7 N -0.93 -57.86 13.29 21.44 0.28 -57.58 16 8 Si 0.97 46.32 29.54 68.60 2.03 48.35 16 9 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 12 C 0.49 22.04 7.74 87.65 0.68 22.72 16 13 O -0.59 -33.21 16.01 -3.06 -0.05 -33.26 16 14 C 0.02 0.69 2.82 85.55 0.24 0.93 16 15 N -0.49 -15.21 5.62 -924.84 -5.20 -20.41 16 16 C 0.01 0.14 7.09 86.46 0.61 0.76 16 17 C -0.09 -1.85 3.90 -11.58 -0.05 -1.90 16 18 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 19 C -0.10 -1.46 5.50 29.30 0.16 -1.30 16 20 C -0.12 -1.37 5.79 30.02 0.17 -1.20 16 21 C -0.11 -1.24 5.92 30.46 0.18 -1.06 16 22 C -0.14 -2.08 4.26 30.22 0.13 -1.95 16 23 C 0.04 0.89 4.58 43.95 0.20 1.09 16 24 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 25 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 27 H 0.09 2.09 6.44 -2.39 -0.02 2.08 16 28 H 0.02 1.36 8.07 -2.39 -0.02 1.34 16 29 H -0.01 -0.45 7.42 -2.39 -0.02 -0.47 16 30 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 31 H 0.11 2.96 6.68 -2.39 -0.02 2.95 16 32 H 0.10 2.34 5.81 -2.39 -0.01 2.33 16 33 H 0.08 1.81 6.88 -2.38 -0.02 1.79 16 34 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.06 0.70 7.98 -2.39 -0.02 0.68 16 39 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.08 1.11 8.13 -2.39 -0.02 1.09 16 42 H 0.07 1.09 5.12 -2.39 -0.01 1.08 16 Total: -1.00 -79.20 326.48 0.40 -78.80 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: 0.98 Total: 8.57 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 4.79 Total: 5.42 kcal Atomic # 7 Polarization: -100.54 SS G_CDS: -7.34 Total: -107.88 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -0.05 Total: -33.26 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -79.20 0.40 -78.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706796861.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.016 kcal (2) G-P(sol) polarization free energy of solvation -79.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds