Wall clock time and date at job start Mon Mar 30 2020 04:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46500 * 119.99726 * 2 1 4 4 C 1.50704 * 109.46671 * 269.99850 * 3 2 1 5 5 H 1.07998 * 120.00280 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99634 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99957 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 119.99941 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47191 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47512 * 119.99788 * 8 6 4 11 11 H 1.48505 * 109.47028 * 240.00017 * 8 6 4 12 12 C 1.34770 * 120.00237 * 180.02562 * 2 1 3 13 13 O 1.21279 * 120.00342 * 180.02562 * 12 2 1 14 14 C 1.50706 * 119.99925 * 359.97438 * 12 2 1 15 15 N 1.46901 * 109.47191 * 180.02562 * 14 12 2 16 16 C 1.46847 * 110.96301 * 65.11697 * 15 14 12 17 17 C 1.53268 * 109.42698 * 189.02225 * 16 15 14 18 18 C 1.53218 * 108.76212 * 304.68166 * 17 16 15 19 19 C 1.52762 * 117.78979 * 265.92920 * 18 17 16 20 20 C 1.52734 * 117.84088 * 196.92297 * 18 17 16 21 21 C 1.53217 * 114.74075 * 51.33411 * 18 17 16 22 22 C 1.46808 * 111.00143 * 189.99908 * 15 14 12 23 23 H 1.09001 * 109.46632 * 270.00037 * 1 2 3 24 24 H 1.08993 * 109.46843 * 30.00247 * 1 2 3 25 25 H 1.09002 * 109.46972 * 150.00369 * 1 2 3 26 26 H 1.08998 * 109.47245 * 29.99638 * 3 2 1 27 27 H 1.09000 * 109.46988 * 150.00304 * 3 2 1 28 28 H 0.97002 * 119.99401 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.46716 * 60.00500 * 14 12 2 30 30 H 1.08997 * 109.46971 * 300.00298 * 14 12 2 31 31 H 1.09002 * 109.33635 * 69.12872 * 16 15 14 32 32 H 1.08996 * 109.63863 * 309.10188 * 16 15 14 33 33 H 1.09002 * 109.61411 * 184.85405 * 17 16 15 34 34 H 1.09004 * 109.61071 * 64.50875 * 17 16 15 35 35 H 1.09000 * 117.50684 * 359.63443 * 19 18 17 36 36 H 1.08999 * 117.50503 * 144.70647 * 19 18 17 37 37 H 1.09003 * 117.50514 * 215.20977 * 20 18 17 38 38 H 1.08998 * 117.50782 * 0.24061 * 20 18 17 39 39 H 1.08997 * 109.61490 * 68.32006 * 21 18 17 40 40 H 1.08998 * 109.61070 * 188.66295 * 21 18 17 41 41 H 1.08999 * 109.46918 * 50.81649 * 22 15 14 42 42 H 1.08997 * 109.47739 * 290.80032 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0974 1.0961 -2.2417 6 6 3.1269 2.8775 -1.6729 7 7 3.5541 3.6176 -0.6732 8 14 3.4375 3.4170 -3.4340 9 1 2.8597 2.4169 -4.3674 10 1 2.8005 4.7381 -3.6668 11 1 4.9001 3.5246 -3.6680 12 6 2.1390 -1.1671 -0.0005 13 8 3.3517 -1.1671 -0.0001 14 6 1.3855 -2.4723 -0.0005 15 7 2.3401 -3.5888 -0.0005 16 6 3.1201 -3.6132 1.2435 17 6 4.2500 -4.6409 1.1166 18 6 3.6428 -5.9977 0.7453 19 6 3.3211 -6.9686 1.8800 20 6 4.5031 -7.2435 0.9472 21 6 2.6971 -5.9687 -0.4599 22 6 1.6561 -4.8659 -0.2385 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 4.0316 4.4432 -0.8506 29 1 0.7586 -2.5298 -0.8903 30 1 0.7591 -2.5302 0.8896 31 1 2.4687 -3.8898 2.0725 32 1 3.5451 -2.6268 1.4287 33 1 4.7775 -4.7239 2.0669 34 1 4.9454 -4.3259 0.3385 35 1 3.5466 -6.6470 2.8967 36 1 2.4366 -7.5960 1.7701 37 1 4.3960 -8.0519 0.2239 38 1 5.5060 -7.1028 1.3501 39 1 3.2654 -5.7590 -1.3660 40 1 2.1976 -6.9328 -0.5562 41 1 1.0239 -4.7802 -1.1223 42 1 1.0407 -5.1151 0.6259 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707117904.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:37 Heat of formation + Delta-G solvation = -4.105720 kcal Electronic energy + Delta-G solvation = -20767.848050 eV Core-core repulsion = 17748.684995 eV Total energy + Delta-G solvation = -3019.163055 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.79041 -38.60982 -36.03374 -34.64794 -32.59228 -30.91761 -30.57004 -28.03334 -26.27435 -25.25567 -23.29900 -22.83290 -22.40604 -21.41458 -18.54941 -18.36112 -16.52953 -16.32298 -15.78575 -15.39817 -15.17390 -15.04717 -14.42904 -14.27946 -13.81949 -13.50789 -13.25424 -12.64189 -12.59706 -12.35263 -12.16279 -11.94152 -11.78329 -11.68448 -11.42553 -11.37017 -11.15909 -11.07494 -10.81515 -10.55993 -10.37821 -10.11878 -9.99191 -9.70804 -9.54932 -8.78408 -8.40728 -8.04030 -7.57145 -6.01252 -4.05536 3.32294 3.39624 3.43052 3.50805 3.64787 3.77619 4.28221 4.48963 4.55331 4.69706 4.84888 4.90341 5.13835 5.25654 5.31795 5.34678 5.45023 5.50910 5.51153 5.52829 5.62169 5.63399 5.75572 5.76778 5.83886 5.94604 5.98180 5.99628 6.04966 6.19244 6.22854 6.35383 6.41571 7.01434 7.22552 7.30396 7.48239 7.59768 7.95938 8.27277 8.47634 8.95188 9.18255 9.59702 11.06838 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.030158 B = 0.004122 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.229428 B = 6792.007901 C = 7047.761930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.606 5.606 3 C 0.246 3.754 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.505 3.495 13 O -0.523 6.523 14 C 0.040 3.960 15 N -0.521 5.521 16 C 0.057 3.943 17 C -0.074 4.074 18 C -0.119 4.119 19 C -0.179 4.179 20 C -0.177 4.177 21 C -0.076 4.076 22 C 0.062 3.938 23 H 0.042 0.958 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.031 0.969 27 H 0.043 0.957 28 H 0.262 0.738 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.022 0.978 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.846 -18.720 4.165 20.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.339 5.339 3 C 0.127 3.873 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.290 3.710 13 O -0.399 6.399 14 C -0.092 4.092 15 N -0.246 5.246 16 C -0.070 4.070 17 C -0.112 4.112 18 C -0.119 4.119 19 C -0.216 4.216 20 C -0.214 4.214 21 C -0.114 4.114 22 C -0.066 4.066 23 H 0.061 0.939 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.117 0.883 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -4.780 -18.454 3.830 19.444 hybrid contribution -0.544 0.258 -0.314 0.679 sum -5.324 -18.196 3.517 19.282 Atomic orbital electron populations 1.21618 0.81652 1.02493 1.00235 1.48174 1.06054 1.07824 1.71885 1.19265 0.92499 0.78049 0.97472 1.21488 1.36236 1.06150 0.92377 0.92407 1.24941 0.95399 0.96420 0.97417 1.69947 1.38547 1.14377 1.30647 0.86442 0.78086 0.78232 0.84657 1.19793 1.21024 1.20880 1.20162 0.88277 0.84702 0.77822 1.90631 1.13646 1.86738 1.48900 1.22004 0.94273 0.90871 1.02007 1.61281 1.24735 1.01598 1.36990 1.22232 0.94772 1.01413 0.88605 1.21156 0.97388 0.91340 1.01306 1.21537 1.01130 0.91688 0.97551 1.23019 0.99596 1.03422 0.95586 1.22942 0.95821 0.99570 1.03027 1.21171 0.95907 0.97334 0.96942 1.22051 0.95254 0.89193 1.00136 0.93914 0.90764 0.92645 0.95120 0.93888 0.92826 0.88567 0.92931 0.95952 0.88265 0.91821 0.90336 0.89110 0.89221 0.89068 0.88940 0.90529 0.91726 0.90822 0.95145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.24 59.85 0.61 1.95 16 2 N -0.61 -12.97 2.86 -182.95 -0.52 -13.50 16 3 C 0.25 6.52 5.16 -5.19 -0.03 6.49 16 4 C -0.52 -15.07 9.39 -34.44 -0.32 -15.39 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 8 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 9 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 12 C 0.50 10.62 7.31 -10.99 -0.08 10.54 16 13 O -0.52 -13.20 13.88 5.56 0.08 -13.13 16 14 C 0.04 0.61 4.01 -4.97 -0.02 0.59 16 15 N -0.52 -8.00 4.33 -235.85 -1.02 -9.02 16 16 C 0.06 0.87 5.13 -3.71 -0.02 0.85 16 17 C -0.07 -0.99 5.86 -26.48 -0.16 -1.14 16 18 C -0.12 -1.33 2.02 -154.54 -0.31 -1.65 16 19 C -0.18 -1.72 9.92 -26.83 -0.27 -1.98 16 20 C -0.18 -1.69 10.00 -26.84 -0.27 -1.96 16 21 C -0.08 -0.83 5.87 -26.48 -0.16 -0.99 16 22 C 0.06 0.73 5.50 -3.74 -0.02 0.71 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 25 H 0.05 0.71 6.44 -51.93 -0.33 0.38 16 26 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 27 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.10 1.33 7.20 -51.93 -0.37 0.95 16 30 H 0.05 0.71 8.09 -51.93 -0.42 0.29 16 31 H 0.02 0.31 8.12 -51.93 -0.42 -0.11 16 32 H 0.10 1.83 5.71 -51.93 -0.30 1.53 16 33 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 41 H 0.07 0.79 7.95 -51.93 -0.41 0.38 16 42 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 LS Contribution 335.56 15.07 5.06 5.06 Total: -1.00 -32.89 335.56 -9.07 -41.96 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -7.25 Total: -2.01 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -1.13 Total: -0.34 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: -0.81 Total: -48.69 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.08 Total: -13.13 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.89 -9.07 -41.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707117904.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.859 kcal (2) G-P(sol) polarization free energy of solvation -32.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds