Wall clock time and date at job start Mon Mar 30 2020 04:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46500 * 119.99726 * 2 1 4 4 C 1.50704 * 109.46671 * 269.99850 * 3 2 1 5 5 H 1.07998 * 120.00280 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99634 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99957 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 119.99941 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47191 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47512 * 119.99788 * 8 6 4 11 11 H 1.48505 * 109.47028 * 240.00017 * 8 6 4 12 12 C 1.34770 * 120.00237 * 180.02562 * 2 1 3 13 13 O 1.21279 * 120.00342 * 180.02562 * 12 2 1 14 14 C 1.50706 * 119.99925 * 359.97438 * 12 2 1 15 15 N 1.46901 * 109.47191 * 180.02562 * 14 12 2 16 16 C 1.46847 * 110.96301 * 65.11697 * 15 14 12 17 17 C 1.53268 * 109.42698 * 189.02225 * 16 15 14 18 18 C 1.53218 * 108.76212 * 304.68166 * 17 16 15 19 19 C 1.52762 * 117.78979 * 265.92920 * 18 17 16 20 20 C 1.52734 * 117.84088 * 196.92297 * 18 17 16 21 21 C 1.53217 * 114.74075 * 51.33411 * 18 17 16 22 22 C 1.46808 * 111.00143 * 189.99908 * 15 14 12 23 23 H 1.09001 * 109.46632 * 270.00037 * 1 2 3 24 24 H 1.08993 * 109.46843 * 30.00247 * 1 2 3 25 25 H 1.09002 * 109.46972 * 150.00369 * 1 2 3 26 26 H 1.08998 * 109.47245 * 29.99638 * 3 2 1 27 27 H 1.09000 * 109.46988 * 150.00304 * 3 2 1 28 28 H 0.97002 * 119.99401 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.46716 * 60.00500 * 14 12 2 30 30 H 1.08997 * 109.46971 * 300.00298 * 14 12 2 31 31 H 1.09002 * 109.33635 * 69.12872 * 16 15 14 32 32 H 1.08996 * 109.63863 * 309.10188 * 16 15 14 33 33 H 1.09002 * 109.61411 * 184.85405 * 17 16 15 34 34 H 1.09004 * 109.61071 * 64.50875 * 17 16 15 35 35 H 1.09000 * 117.50684 * 359.63443 * 19 18 17 36 36 H 1.08999 * 117.50503 * 144.70647 * 19 18 17 37 37 H 1.09003 * 117.50514 * 215.20977 * 20 18 17 38 38 H 1.08998 * 117.50782 * 0.24061 * 20 18 17 39 39 H 1.08997 * 109.61490 * 68.32006 * 21 18 17 40 40 H 1.08998 * 109.61070 * 188.66295 * 21 18 17 41 41 H 1.08999 * 109.46918 * 50.81649 * 22 15 14 42 42 H 1.08997 * 109.47739 * 290.80032 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0974 1.0961 -2.2417 6 6 3.1269 2.8775 -1.6729 7 7 3.5541 3.6176 -0.6732 8 14 3.4375 3.4170 -3.4340 9 1 2.8597 2.4169 -4.3674 10 1 2.8005 4.7381 -3.6668 11 1 4.9001 3.5246 -3.6680 12 6 2.1390 -1.1671 -0.0005 13 8 3.3517 -1.1671 -0.0001 14 6 1.3855 -2.4723 -0.0005 15 7 2.3401 -3.5888 -0.0005 16 6 3.1201 -3.6132 1.2435 17 6 4.2500 -4.6409 1.1166 18 6 3.6428 -5.9977 0.7453 19 6 3.3211 -6.9686 1.8800 20 6 4.5031 -7.2435 0.9472 21 6 2.6971 -5.9687 -0.4599 22 6 1.6561 -4.8659 -0.2385 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 4.0316 4.4432 -0.8506 29 1 0.7586 -2.5298 -0.8903 30 1 0.7591 -2.5302 0.8896 31 1 2.4687 -3.8898 2.0725 32 1 3.5451 -2.6268 1.4287 33 1 4.7775 -4.7239 2.0669 34 1 4.9454 -4.3259 0.3385 35 1 3.5466 -6.6470 2.8967 36 1 2.4366 -7.5960 1.7701 37 1 4.3960 -8.0519 0.2239 38 1 5.5060 -7.1028 1.3501 39 1 3.2654 -5.7590 -1.3660 40 1 2.1976 -6.9328 -0.5562 41 1 1.0239 -4.7802 -1.1223 42 1 1.0407 -5.1151 0.6259 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707117904.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:37 Heat of formation + Delta-G solvation = -25.701399 kcal Electronic energy + Delta-G solvation = -20768.784509 eV Core-core repulsion = 17748.684995 eV Total energy + Delta-G solvation = -3020.099514 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.04329 -39.91145 -37.17046 -36.36814 -34.72094 -31.90908 -31.75959 -29.86023 -27.59452 -26.89241 -24.53304 -24.28482 -23.36830 -22.47714 -19.98215 -19.46837 -18.68788 -17.82468 -17.21689 -16.61451 -16.57372 -16.18490 -16.02211 -15.59577 -15.18093 -14.58866 -14.49755 -14.12268 -13.98615 -13.72372 -13.49414 -13.42778 -13.12535 -12.95246 -12.83042 -12.61971 -12.52272 -12.38342 -12.33175 -12.19333 -12.03582 -11.67135 -11.36711 -10.87534 -10.64829 -10.61536 -10.33541 -9.38584 -9.14086 -8.22128 -6.36922 1.35917 1.38820 1.50660 1.89250 2.27656 2.42049 2.87907 3.06606 3.07644 3.70616 3.79419 3.84354 4.00796 4.07133 4.24369 4.28400 4.30709 4.45662 4.54011 4.60679 4.63142 4.67068 4.74070 4.81274 4.90636 4.96344 5.00105 5.01216 5.06298 5.12327 5.18204 5.23569 5.30773 5.34708 5.39533 5.57888 5.85805 6.05013 6.07363 6.25993 6.71801 6.84451 7.29762 7.56258 8.84946 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.030158 B = 0.004122 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.229428 B = 6792.007901 C = 7047.761930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.614 5.614 3 C 0.261 3.739 4 C -0.541 4.541 5 H 0.052 0.948 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.969 3.031 9 H -0.267 1.267 10 H -0.268 1.268 11 H -0.282 1.282 12 C 0.493 3.507 13 O -0.579 6.579 14 C 0.055 3.945 15 N -0.546 5.546 16 C 0.063 3.937 17 C -0.071 4.071 18 C -0.137 4.137 19 C -0.166 4.166 20 C -0.172 4.172 21 C -0.073 4.073 22 C 0.062 3.938 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.094 0.906 26 H 0.022 0.978 27 H -0.005 1.005 28 H 0.267 0.733 29 H 0.122 0.878 30 H 0.082 0.918 31 H 0.037 0.963 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.059 0.941 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.983 -20.946 3.346 22.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.347 5.347 3 C 0.140 3.860 4 C -0.579 4.579 5 H 0.071 0.929 6 C -0.193 4.193 7 N -0.570 5.570 8 Si 0.793 3.207 9 H -0.191 1.191 10 H -0.193 1.193 11 H -0.208 1.208 12 C 0.281 3.719 13 O -0.458 6.458 14 C -0.076 4.076 15 N -0.272 5.272 16 C -0.065 4.065 17 C -0.109 4.109 18 C -0.137 4.137 19 C -0.202 4.202 20 C -0.208 4.208 21 C -0.111 4.111 22 C -0.065 4.065 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.112 0.888 26 H 0.040 0.960 27 H 0.013 0.987 28 H 0.076 0.924 29 H 0.140 0.860 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.109 0.891 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.973 -20.704 3.018 22.054 hybrid contribution 0.145 0.946 0.004 0.957 sum -6.827 -19.758 3.021 21.121 Atomic orbital electron populations 1.21922 0.77929 1.04014 1.02450 1.48210 1.08388 1.06317 1.71797 1.18708 0.90987 0.80432 0.95920 1.21746 1.36646 1.06442 0.93093 0.92948 1.25875 0.94918 0.96448 1.02020 1.70064 1.39040 1.14864 1.32986 0.85353 0.77844 0.78407 0.79102 1.19137 1.19263 1.20840 1.21282 0.88066 0.86320 0.76213 1.90608 1.16404 1.87692 1.51142 1.21920 0.93699 0.87518 1.04445 1.61230 1.25677 1.03175 1.37103 1.22054 0.95494 0.99577 0.89381 1.21061 0.96493 0.92637 1.00702 1.21452 1.02501 0.90788 0.98957 1.23080 1.00048 1.02110 0.94998 1.23018 0.95885 0.98719 1.03217 1.21177 0.95624 0.98326 0.95947 1.22161 0.95529 0.87398 1.01379 0.91281 0.91595 0.88775 0.95965 0.98661 0.92433 0.85986 0.89989 0.94523 0.92590 0.91181 0.93249 0.89068 0.87530 0.87688 0.89088 0.92189 0.89021 0.89291 0.93580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.34 10.24 127.77 1.31 3.65 16 2 N -0.61 -26.60 2.86 -851.12 -2.43 -29.03 16 3 C 0.26 14.46 5.16 85.63 0.44 14.91 16 4 C -0.54 -31.96 9.39 25.60 0.24 -31.72 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.36 5.46 84.66 0.46 0.82 16 7 N -0.93 -57.32 13.29 21.45 0.28 -57.04 16 8 Si 0.97 45.89 29.54 68.60 2.03 47.91 16 9 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 12 C 0.49 21.06 7.31 87.66 0.64 21.70 16 13 O -0.58 -30.94 13.88 -3.03 -0.04 -30.98 16 14 C 0.05 1.59 4.01 85.56 0.34 1.93 16 15 N -0.55 -16.14 4.33 -900.11 -3.90 -20.04 16 16 C 0.06 1.92 5.13 86.40 0.44 2.36 16 17 C -0.07 -1.93 5.86 30.76 0.18 -1.75 16 18 C -0.14 -2.83 2.02 -52.20 -0.11 -2.94 16 19 C -0.17 -2.68 9.92 30.53 0.30 -2.37 16 20 C -0.17 -2.90 10.00 30.52 0.31 -2.60 16 21 C -0.07 -1.42 5.87 30.75 0.18 -1.24 16 22 C 0.06 1.28 5.50 86.41 0.48 1.76 16 23 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.07 2.07 8.07 -2.39 -0.02 2.05 16 25 H 0.09 2.06 6.44 -2.39 -0.02 2.04 16 26 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 27 H 0.00 -0.30 7.42 -2.39 -0.02 -0.32 16 28 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 29 H 0.12 2.91 7.20 -2.39 -0.02 2.89 16 30 H 0.08 1.92 8.09 -2.39 -0.02 1.90 16 31 H 0.04 0.99 8.12 -2.39 -0.02 0.97 16 32 H 0.06 2.20 5.71 -2.39 -0.01 2.19 16 33 H 0.07 1.72 8.08 -2.39 -0.02 1.70 16 34 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.11 1.39 8.14 -2.39 -0.02 1.38 16 37 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.09 1.29 8.08 -2.39 -0.02 1.27 16 41 H 0.09 1.56 7.95 -2.39 -0.02 1.54 16 42 H 0.05 0.83 8.12 -2.39 -0.02 0.81 16 Total: -1.00 -75.83 335.56 2.13 -73.70 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.97 Total: 10.97 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 5.22 Total: 4.51 kcal Atomic # 7 Polarization: -100.07 SS G_CDS: -6.04 Total: -106.11 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.04 Total: -30.98 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -75.83 2.13 -73.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707117904.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.994 kcal (2) G-P(sol) polarization free energy of solvation -75.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds