Wall clock time and date at job start Mon Mar 30 2020 04:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00096 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.46927 * 59.99717 * 8 6 4 10 10 H 1.48496 * 109.47287 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47040 * 299.99940 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 N 1.46902 * 109.47027 * 179.72353 * 14 12 2 16 16 C 1.47600 * 111.00104 * 91.52273 * 15 14 12 17 17 C 1.53620 * 88.07763 * 138.05654 * 16 15 14 18 18 C 1.46785 * 110.99833 * 187.28049 * 15 14 12 19 19 C 1.53681 * 115.02195 * 104.76418 * 18 15 14 20 20 C 1.55031 * 104.02875 * 207.14056 * 19 18 15 21 21 C 1.54943 * 102.83675 * 37.42056 * 20 19 18 22 22 C 1.53300 * 115.26330 * 339.17284 * 18 15 14 23 23 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 24 24 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 25 25 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 26 26 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 27 27 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 28 28 H 0.96991 * 119.99957 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.46965 * 299.72211 * 14 12 2 30 30 H 1.08994 * 109.46990 * 59.72065 * 14 12 2 31 31 H 1.09001 * 113.45367 * 252.86366 * 16 15 14 32 32 H 1.08999 * 113.45244 * 23.19828 * 16 15 14 33 33 H 1.09002 * 114.20142 * 88.13126 * 17 16 15 34 34 H 1.09001 * 114.20328 * 220.93536 * 17 16 15 35 35 H 1.09004 * 110.52108 * 325.77672 * 19 18 15 36 36 H 1.09004 * 110.52066 * 88.50008 * 19 18 15 37 37 H 1.08998 * 110.73914 * 279.08128 * 20 19 18 38 38 H 1.09008 * 110.89645 * 155.82997 * 20 19 18 39 39 H 1.09004 * 110.47720 * 203.69599 * 21 20 19 40 40 H 1.09001 * 110.59225 * 81.12275 * 21 20 19 41 41 H 1.08999 * 110.07993 * 248.55313 * 22 18 15 42 42 H 1.09002 * 110.08190 * 10.05617 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6172 -0.6732 8 14 3.4376 3.4170 -3.4340 9 1 2.1398 3.5952 -4.1334 10 1 4.1801 4.7030 -3.4341 11 1 4.2394 2.3819 -4.1346 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 7 2.3402 -3.5888 -0.0102 16 6 2.6561 -4.0207 1.3654 17 6 2.5665 -5.4736 0.8745 18 6 1.6489 -4.8712 -0.1896 19 6 1.7838 -5.4922 -1.5888 20 6 0.5014 -6.3492 -1.7448 21 6 -0.5777 -5.4845 -1.0458 22 6 0.1570 -4.8652 0.1631 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3632 -0.8900 -0.5138 26 1 1.6083 2.0285 0.5137 27 1 3.1499 1.1385 0.5139 28 1 4.0317 4.4431 -0.8505 29 1 0.7588 -2.5340 0.8844 30 1 0.7590 -2.5261 -0.8955 31 1 3.6558 -3.7338 1.6915 32 1 1.8853 -3.7585 2.0902 33 1 3.5029 -5.8718 0.4836 34 1 2.0643 -6.1492 1.5670 35 1 1.8179 -4.7135 -2.3508 36 1 2.6725 -6.1209 -1.6438 37 1 0.6143 -7.3084 -1.2396 38 1 0.2569 -6.4953 -2.7971 39 1 -1.4069 -6.1074 -0.7100 40 1 -0.9359 -4.7030 -1.7158 41 1 -0.0189 -5.4654 1.0557 42 1 -0.1848 -3.8431 0.3264 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707331065.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:32 Heat of formation + Delta-G solvation = 4.650909 kcal Electronic energy + Delta-G solvation = -21073.595369 eV Core-core repulsion = 18054.812029 eV Total energy + Delta-G solvation = -3018.783339 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.21571 -38.52349 -35.68927 -34.64113 -32.61300 -31.04936 -28.84237 -27.84849 -27.02847 -25.93770 -24.81959 -22.39310 -22.15283 -20.84580 -18.56004 -18.03515 -16.83031 -16.47397 -16.00511 -15.42697 -15.31538 -15.02272 -14.74895 -14.16792 -13.99437 -13.35741 -13.15549 -12.89591 -12.31592 -12.14511 -11.99590 -11.83458 -11.82000 -11.62181 -11.25543 -11.18648 -11.16392 -10.97066 -10.83391 -10.76542 -10.68584 -10.50088 -10.14914 -10.10770 -9.59126 -8.96264 -8.46851 -8.39067 -7.56815 -5.99959 -4.04467 3.34905 3.39172 3.41914 3.52984 3.71309 4.16120 4.35177 4.40839 4.50809 4.65280 4.84994 4.98739 5.13452 5.17054 5.31121 5.34109 5.36449 5.37308 5.43974 5.50041 5.59625 5.64630 5.68423 5.73446 5.75868 5.86998 5.88153 5.92925 5.97450 6.08103 6.18788 6.21505 6.24274 6.53701 7.01629 7.21276 7.49251 7.61206 7.96993 8.28615 8.49429 8.95889 9.21528 9.60600 11.08115 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026820 B = 0.004551 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.757113 B = 6150.873203 C = 6313.494999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.608 5.608 3 C 0.247 3.753 4 C -0.525 4.525 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.506 3.494 13 O -0.521 6.521 14 C 0.002 3.998 15 N -0.434 5.434 16 C 0.001 3.999 17 C -0.133 4.133 18 C 0.050 3.950 19 C -0.102 4.102 20 C -0.124 4.124 21 C -0.121 4.121 22 C -0.141 4.141 23 H 0.042 0.958 24 H 0.074 0.926 25 H 0.053 0.947 26 H 0.031 0.969 27 H 0.043 0.957 28 H 0.263 0.737 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.016 -18.996 2.752 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.342 5.342 3 C 0.128 3.872 4 C -0.564 4.564 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.291 3.709 13 O -0.396 6.396 14 C -0.130 4.130 15 N -0.155 5.155 16 C -0.127 4.127 17 C -0.171 4.171 18 C -0.041 4.041 19 C -0.140 4.140 20 C -0.162 4.162 21 C -0.158 4.158 22 C -0.179 4.179 23 H 0.060 0.940 24 H 0.092 0.908 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.730 -18.528 2.333 20.614 hybrid contribution -0.695 0.420 -0.449 0.928 sum -9.425 -18.108 1.883 20.500 Atomic orbital electron populations 1.21603 0.81785 1.02409 1.00153 1.48171 1.05952 1.07822 1.72229 1.19247 0.92493 0.78041 0.97423 1.21407 1.36444 1.06189 0.92336 0.92582 1.24935 0.95357 0.96401 0.97407 1.69924 1.38442 1.14394 1.30776 0.86559 0.78335 0.77798 0.84739 1.20295 1.21174 1.20153 1.20111 0.88246 0.84534 0.78001 1.90667 1.13634 1.86833 1.48500 1.22683 0.95436 0.92518 1.02317 1.68809 1.28564 0.99663 1.18452 1.23793 1.02881 0.94560 0.91501 1.23213 1.00128 0.96188 0.97546 1.22958 0.92896 0.91828 0.96377 1.22185 0.97533 0.98642 0.95681 1.22510 0.95123 0.98280 1.00312 1.22328 0.97633 0.99070 0.96798 1.22558 0.94185 1.02254 0.98943 0.93967 0.90751 0.92828 0.95133 0.93935 0.92706 0.91510 0.88633 0.89340 0.91679 0.88875 0.90779 0.90798 0.91171 0.91606 0.91571 0.91731 0.91551 0.91171 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.37 10.25 59.85 0.61 1.99 16 2 N -0.61 -13.38 2.86 -182.95 -0.52 -13.90 16 3 C 0.25 6.68 5.16 -5.20 -0.03 6.66 16 4 C -0.52 -15.34 9.39 -34.44 -0.32 -15.67 16 5 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 8 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 C 0.51 11.09 7.73 -10.98 -0.08 11.00 16 13 O -0.52 -13.94 16.01 5.55 0.09 -13.86 16 14 C 0.00 0.03 2.58 -4.97 -0.01 0.02 16 15 N -0.43 -6.79 5.68 -232.63 -1.32 -8.12 16 16 C 0.00 0.02 7.46 -8.55 -0.06 -0.04 16 17 C -0.13 -1.42 7.63 -26.47 -0.20 -1.62 16 18 C 0.05 0.59 1.13 -136.65 -0.15 0.43 16 19 C -0.10 -1.14 6.42 -25.30 -0.16 -1.30 16 20 C -0.12 -1.08 6.91 -24.63 -0.17 -1.25 16 21 C -0.12 -1.04 6.84 -24.96 -0.17 -1.21 16 22 C -0.14 -1.36 5.57 -25.83 -0.14 -1.50 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 25 H 0.05 0.71 6.43 -51.93 -0.33 0.37 16 26 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 27 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.07 0.90 5.99 -51.93 -0.31 0.59 16 30 H 0.10 1.41 6.98 -51.93 -0.36 1.05 16 31 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.07 0.79 7.41 -51.93 -0.38 0.40 16 33 H 0.09 0.99 7.98 -51.93 -0.41 0.58 16 34 H 0.07 0.64 7.87 -51.93 -0.41 0.23 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.74 7.83 -51.93 -0.41 0.34 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.60 7.73 -51.93 -0.40 0.20 16 42 H 0.08 0.78 4.97 -51.93 -0.26 0.52 16 LS Contribution 331.10 15.07 4.99 4.99 Total: -1.00 -34.29 331.10 -9.06 -43.35 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -7.01 Total: -2.54 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -1.00 Total: -0.81 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: -1.11 Total: -48.49 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.09 Total: -13.86 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.29 -9.06 -43.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707331065.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.996 kcal (2) G-P(sol) polarization free energy of solvation -34.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds