Wall clock time and date at job start Mon Mar 30 2020 04:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00096 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.46927 * 59.99717 * 8 6 4 10 10 H 1.48496 * 109.47287 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47040 * 299.99940 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 N 1.46902 * 109.47027 * 179.72353 * 14 12 2 16 16 C 1.47600 * 111.00104 * 91.52273 * 15 14 12 17 17 C 1.53620 * 88.07763 * 138.05654 * 16 15 14 18 18 C 1.46785 * 110.99833 * 187.28049 * 15 14 12 19 19 C 1.53681 * 115.02195 * 104.76418 * 18 15 14 20 20 C 1.55031 * 104.02875 * 207.14056 * 19 18 15 21 21 C 1.54943 * 102.83675 * 37.42056 * 20 19 18 22 22 C 1.53300 * 115.26330 * 339.17284 * 18 15 14 23 23 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 24 24 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 25 25 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 26 26 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 27 27 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 28 28 H 0.96991 * 119.99957 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.46965 * 299.72211 * 14 12 2 30 30 H 1.08994 * 109.46990 * 59.72065 * 14 12 2 31 31 H 1.09001 * 113.45367 * 252.86366 * 16 15 14 32 32 H 1.08999 * 113.45244 * 23.19828 * 16 15 14 33 33 H 1.09002 * 114.20142 * 88.13126 * 17 16 15 34 34 H 1.09001 * 114.20328 * 220.93536 * 17 16 15 35 35 H 1.09004 * 110.52108 * 325.77672 * 19 18 15 36 36 H 1.09004 * 110.52066 * 88.50008 * 19 18 15 37 37 H 1.08998 * 110.73914 * 279.08128 * 20 19 18 38 38 H 1.09008 * 110.89645 * 155.82997 * 20 19 18 39 39 H 1.09004 * 110.47720 * 203.69599 * 21 20 19 40 40 H 1.09001 * 110.59225 * 81.12275 * 21 20 19 41 41 H 1.08999 * 110.07993 * 248.55313 * 22 18 15 42 42 H 1.09002 * 110.08190 * 10.05617 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6172 -0.6732 8 14 3.4376 3.4170 -3.4340 9 1 2.1398 3.5952 -4.1334 10 1 4.1801 4.7030 -3.4341 11 1 4.2394 2.3819 -4.1346 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 7 2.3402 -3.5888 -0.0102 16 6 2.6561 -4.0207 1.3654 17 6 2.5665 -5.4736 0.8745 18 6 1.6489 -4.8712 -0.1896 19 6 1.7838 -5.4922 -1.5888 20 6 0.5014 -6.3492 -1.7448 21 6 -0.5777 -5.4845 -1.0458 22 6 0.1570 -4.8652 0.1631 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3632 -0.8900 -0.5138 26 1 1.6083 2.0285 0.5137 27 1 3.1499 1.1385 0.5139 28 1 4.0317 4.4431 -0.8505 29 1 0.7588 -2.5340 0.8844 30 1 0.7590 -2.5261 -0.8955 31 1 3.6558 -3.7338 1.6915 32 1 1.8853 -3.7585 2.0902 33 1 3.5029 -5.8718 0.4836 34 1 2.0643 -6.1492 1.5670 35 1 1.8179 -4.7135 -2.3508 36 1 2.6725 -6.1209 -1.6438 37 1 0.6143 -7.3084 -1.2396 38 1 0.2569 -6.4953 -2.7971 39 1 -1.4069 -6.1074 -0.7100 40 1 -0.9359 -4.7030 -1.7158 41 1 -0.0189 -5.4654 1.0557 42 1 -0.1848 -3.8431 0.3264 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707331065.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:32 Heat of formation + Delta-G solvation = -19.775426 kcal Electronic energy + Delta-G solvation = -21074.654574 eV Core-core repulsion = 18054.812029 eV Total energy + Delta-G solvation = -3019.842544 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.22673 -40.20690 -36.68222 -36.33631 -34.76124 -32.32882 -29.85417 -29.53633 -27.84204 -27.40976 -26.42755 -24.23546 -23.08066 -21.58489 -20.11845 -19.04445 -18.71414 -18.11542 -17.30087 -16.79056 -16.66269 -16.39793 -16.01514 -15.72149 -15.25333 -14.61083 -14.23975 -14.09848 -13.85691 -13.68832 -13.47983 -13.37475 -13.17855 -12.80463 -12.67071 -12.60423 -12.46022 -12.20531 -12.11503 -11.93234 -11.81001 -11.72829 -11.69490 -11.35538 -11.06300 -10.66056 -10.54713 -9.67664 -9.41209 -8.23953 -6.39190 1.34256 1.39320 1.46561 1.84781 2.24731 2.40040 3.04264 3.05581 3.44436 3.52804 3.82369 3.88884 4.00151 4.08127 4.17855 4.31339 4.35942 4.44713 4.53870 4.59922 4.68374 4.69911 4.78872 4.83047 4.90343 4.93112 4.97105 5.01932 5.06638 5.13664 5.19628 5.22573 5.25017 5.39388 5.51744 5.54136 5.58847 5.82941 6.04866 6.12837 6.68522 6.79965 7.27202 7.52667 8.82979 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026820 B = 0.004551 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.757113 B = 6150.873203 C = 6313.494999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.615 5.615 3 C 0.261 3.739 4 C -0.544 4.544 5 H 0.050 0.950 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.968 3.032 9 H -0.258 1.258 10 H -0.276 1.276 11 H -0.280 1.280 12 C 0.494 3.506 13 O -0.584 6.584 14 C 0.022 3.978 15 N -0.478 5.478 16 C -0.005 4.005 17 C -0.117 4.117 18 C 0.052 3.948 19 C -0.108 4.108 20 C -0.117 4.117 21 C -0.119 4.119 22 C -0.138 4.138 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.090 0.910 26 H 0.024 0.976 27 H -0.006 1.006 28 H 0.268 0.732 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.049 0.951 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.061 0.939 41 H 0.089 0.911 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.562 -20.876 2.203 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.348 5.348 3 C 0.139 3.861 4 C -0.583 4.583 5 H 0.069 0.931 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.183 1.183 10 H -0.201 1.201 11 H -0.206 1.206 12 C 0.282 3.718 13 O -0.464 6.464 14 C -0.109 4.109 15 N -0.200 5.200 16 C -0.134 4.134 17 C -0.155 4.155 18 C -0.038 4.038 19 C -0.146 4.146 20 C -0.155 4.155 21 C -0.156 4.156 22 C -0.177 4.177 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.108 0.892 26 H 0.042 0.958 27 H 0.012 0.988 28 H 0.077 0.923 29 H 0.117 0.883 30 H 0.129 0.871 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.123 0.877 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.080 0.920 41 H 0.108 0.892 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.341 -20.428 1.789 23.433 hybrid contribution 0.133 0.995 -0.237 1.031 sum -11.208 -19.433 1.552 22.487 Atomic orbital electron populations 1.21921 0.77924 1.03897 1.02568 1.48219 1.08382 1.06300 1.71848 1.18713 0.90966 0.80415 0.95959 1.21667 1.37032 1.06568 0.93007 0.93141 1.25877 0.94786 0.96368 1.02114 1.70044 1.38838 1.14826 1.33132 0.85463 0.78922 0.77351 0.79043 1.18263 1.20053 1.20581 1.21304 0.87985 0.86307 0.76221 1.90625 1.16641 1.87894 1.51234 1.22560 0.94850 0.89107 1.04347 1.68771 1.30097 1.01140 1.20020 1.23862 1.01880 0.96541 0.91079 1.23161 1.00054 0.94915 0.97359 1.23094 0.94394 0.89445 0.96863 1.22222 0.99123 0.98428 0.94852 1.22487 0.93579 0.98412 1.01007 1.22342 0.97940 0.99128 0.96210 1.22572 0.92211 1.02676 1.00203 0.90990 0.91474 0.89153 0.95762 0.98822 0.92338 0.88283 0.87131 0.92201 0.89991 0.89440 0.87695 0.93246 0.91317 0.90130 0.91088 0.89750 0.92043 0.89216 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.41 10.25 127.77 1.31 3.72 16 2 N -0.61 -27.39 2.86 -851.12 -2.43 -29.82 16 3 C 0.26 14.75 5.16 85.63 0.44 15.19 16 4 C -0.54 -32.70 9.39 25.60 0.24 -32.46 16 5 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.45 5.46 84.66 0.46 0.91 16 7 N -0.93 -57.78 13.29 21.45 0.28 -57.49 16 8 Si 0.97 46.29 29.54 68.60 2.03 48.32 16 9 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 12 C 0.49 22.06 7.73 87.66 0.68 22.74 16 13 O -0.58 -33.00 16.01 -3.04 -0.05 -33.05 16 14 C 0.02 0.68 2.58 85.56 0.22 0.90 16 15 N -0.48 -14.72 5.68 -889.91 -5.06 -19.78 16 16 C 0.00 -0.13 7.46 82.86 0.62 0.49 16 17 C -0.12 -2.26 7.63 30.76 0.23 -2.03 16 18 C 0.05 1.10 1.13 0.32 0.00 1.11 16 19 C -0.11 -2.25 6.42 31.52 0.20 -2.04 16 20 C -0.12 -1.68 6.91 31.95 0.22 -1.46 16 21 C -0.12 -1.58 6.84 31.74 0.22 -1.36 16 22 C -0.14 -2.12 5.57 31.18 0.17 -1.95 16 23 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.07 2.15 8.07 -2.39 -0.02 2.13 16 25 H 0.09 2.09 6.43 -2.39 -0.02 2.07 16 26 H 0.02 1.38 8.07 -2.39 -0.02 1.36 16 27 H -0.01 -0.42 7.42 -2.38 -0.02 -0.43 16 28 H 0.27 15.58 8.31 -92.72 -0.77 14.81 16 29 H 0.10 2.35 5.99 -2.38 -0.01 2.34 16 30 H 0.11 3.00 6.98 -2.39 -0.02 2.98 16 31 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.08 1.81 7.41 -2.39 -0.02 1.80 16 33 H 0.09 1.77 7.98 -2.39 -0.02 1.76 16 34 H 0.10 1.40 7.87 -2.39 -0.02 1.38 16 35 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.40 7.83 -2.39 -0.02 1.38 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.09 1.07 7.73 -2.39 -0.02 1.05 16 42 H 0.08 1.20 4.97 -2.39 -0.01 1.19 16 Total: -1.00 -79.17 331.10 0.78 -78.40 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 0.98 Total: 9.68 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 5.02 Total: 3.75 kcal Atomic # 7 Polarization: -99.89 SS G_CDS: -7.21 Total: -107.09 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.05 Total: -33.05 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -79.17 0.78 -78.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707331065.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.623 kcal (2) G-P(sol) polarization free energy of solvation -79.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds