Wall clock time and date at job start Mon Mar 30 2020 04:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47238 * 2 1 4 4 C 1.46901 * 111.00455 * 72.07991 * 3 2 1 5 5 C 1.50694 * 109.47053 * 199.82483 * 4 3 2 6 6 H 1.08001 * 120.00759 * 5.10576 * 5 4 3 7 7 C 1.37886 * 119.99931 * 185.10564 * 5 4 3 8 8 N 1.31515 * 119.99505 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 119.99957 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47376 * 90.00273 * 9 7 5 11 11 H 1.48499 * 109.47145 * 209.99971 * 9 7 5 12 12 H 1.48502 * 109.47420 * 329.99862 * 9 7 5 13 13 C 1.39206 * 110.99971 * 196.03297 * 3 2 1 14 14 C 1.36169 * 126.22039 * 123.64279 * 13 3 2 15 15 C 1.50703 * 126.09442 * 0.02562 * 14 13 3 16 16 N 1.46899 * 109.47535 * 89.99780 * 15 14 13 17 17 C 1.46895 * 111.00072 * 180.02562 * 16 15 14 18 18 C 1.39777 * 107.81621 * 180.26286 * 14 13 3 19 19 C 1.50701 * 125.84154 * 179.73699 * 18 14 13 20 20 N 1.30843 * 108.32085 * 359.55495 * 18 14 13 21 21 N 1.35246 * 126.22529 * 303.64426 * 13 3 2 22 22 C 1.46508 * 126.03893 * 359.97438 * 21 13 3 23 23 H 1.09003 * 109.46824 * 294.82581 * 1 2 3 24 24 H 1.08990 * 109.46850 * 54.82387 * 1 2 3 25 25 H 1.08993 * 109.47078 * 174.83135 * 1 2 3 26 26 H 1.08994 * 109.47149 * 239.99343 * 2 1 3 27 27 H 1.09008 * 109.47202 * 119.99644 * 2 1 3 28 28 H 1.09004 * 109.46686 * 319.82464 * 4 3 2 29 29 H 1.08997 * 109.47377 * 79.82383 * 4 3 2 30 30 H 0.97004 * 119.99351 * 179.97438 * 8 7 5 31 31 H 1.09005 * 109.46871 * 329.99639 * 15 14 13 32 32 H 1.09003 * 109.47064 * 210.00444 * 15 14 13 33 33 H 1.00896 * 110.99582 * 56.04689 * 16 15 14 34 34 H 1.09001 * 109.47159 * 179.97438 * 17 16 15 35 35 H 1.08999 * 109.47514 * 299.99824 * 17 16 15 36 36 H 1.09000 * 109.46998 * 59.99971 * 17 16 15 37 37 H 1.08998 * 109.47079 * 89.99916 * 19 18 14 38 38 H 1.09001 * 109.47144 * 210.00092 * 19 18 14 39 39 H 1.09001 * 109.46610 * 329.99611 * 19 18 14 40 40 H 1.08997 * 109.46911 * 95.05666 * 22 21 13 41 41 H 1.09002 * 109.47182 * 215.05787 * 22 21 13 42 42 H 1.09005 * 109.47064 * 335.05968 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7974 2.0221 1.3049 5 6 1.8441 3.5200 1.1469 6 1 1.9385 3.9568 0.1637 7 6 1.7661 4.3331 2.2578 8 7 1.6506 3.8013 3.4551 9 14 1.8247 6.1898 2.0621 10 1 0.4457 6.7132 1.8896 11 1 2.4364 6.7960 3.2719 12 1 2.6386 6.5365 0.8694 13 6 3.3636 1.4389 -0.3589 14 6 3.8940 2.1599 -1.3851 15 6 3.1301 3.0441 -2.3369 16 7 3.0666 4.4078 -1.7944 17 6 2.3269 5.2996 -2.6974 18 6 5.2726 1.9294 -1.4020 19 6 6.2547 2.5237 -2.3784 20 7 5.5650 1.1126 -0.4226 21 7 4.3799 0.7848 0.2481 22 6 4.2620 -0.1083 1.4035 23 1 -0.3633 0.4315 0.9327 24 1 -0.3632 0.5920 -0.8399 25 1 -0.3633 -1.0234 -0.0926 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 0.8216 1.7276 1.6914 29 1 2.5744 1.7057 2.0008 30 1 1.5961 4.3733 4.2366 31 1 2.1194 2.6554 -2.4620 32 1 3.6353 3.0603 -3.3026 33 1 3.9912 4.7664 -1.6088 34 1 2.2946 6.3024 -2.2716 35 1 2.8262 5.3316 -3.6658 36 1 1.3108 4.9264 -2.8247 37 1 6.6329 3.4671 -1.9845 38 1 7.0846 1.8325 -2.5251 39 1 5.7569 2.7013 -3.3316 40 1 4.1858 -1.1396 1.0592 41 1 5.1425 -0.0008 2.0371 42 1 3.3701 0.1512 1.9738 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723190755.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:10 Heat of formation + Delta-G solvation = 90.855484 kcal Electronic energy + Delta-G solvation = -21879.414357 eV Core-core repulsion = 18896.661880 eV Total energy + Delta-G solvation = -2982.752477 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.87738 -36.85229 -35.53092 -33.00530 -32.47891 -30.77724 -29.28525 -28.92358 -27.01631 -25.57264 -24.39376 -22.73534 -22.46147 -21.36858 -19.12963 -18.80294 -16.57837 -15.81488 -15.31928 -15.12632 -14.81026 -14.53034 -13.98301 -13.78017 -13.55713 -13.30482 -13.12119 -13.00558 -12.33331 -12.30026 -12.02037 -11.78558 -11.62975 -11.58093 -11.46698 -11.33219 -11.22436 -11.03201 -10.83517 -10.48223 -10.33237 -9.93307 -9.72742 -9.15462 -8.41067 -8.28892 -7.77765 -7.63037 -7.45889 -5.88739 -3.84306 2.51114 3.08279 3.31301 3.43877 3.49342 3.59210 4.45380 4.69867 4.96824 5.09073 5.41699 5.44553 5.49412 5.52595 5.55546 5.62980 5.69953 5.77651 5.78588 5.86342 5.90116 5.93307 6.01925 6.10695 6.15079 6.27583 6.34466 6.36576 6.55773 6.63700 6.73475 7.05146 7.14445 7.29519 7.40655 7.70414 7.83738 8.03508 8.21424 8.31757 8.38203 8.58101 9.41116 9.79987 11.23477 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.012955 B = 0.009612 C = 0.007542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.845958 B = 2912.321730 C = 3711.816380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.045 3.955 3 N -0.463 5.463 4 C 0.187 3.813 5 C -0.496 4.496 6 H 0.108 0.892 7 C 0.049 3.951 8 N -0.914 5.914 9 Si 0.898 3.102 10 H -0.286 1.286 11 H -0.296 1.296 12 H -0.266 1.266 13 C 0.320 3.680 14 C -0.227 4.227 15 C 0.159 3.841 16 N -0.669 5.669 17 C 0.033 3.967 18 C 0.074 3.926 19 C -0.067 4.067 20 N -0.313 5.313 21 N -0.394 5.394 22 C 0.096 3.904 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.030 0.970 28 H 0.036 0.964 29 H 0.001 0.999 30 H 0.256 0.744 31 H 0.077 0.923 32 H 0.018 0.982 33 H 0.335 0.665 34 H 0.059 0.941 35 H 0.008 0.992 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.081 0.919 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.155 -5.081 -10.247 11.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 N -0.188 5.188 4 C 0.065 3.935 5 C -0.534 4.534 6 H 0.126 0.874 7 C -0.150 4.150 8 N -0.556 5.556 9 Si 0.727 3.273 10 H -0.212 1.212 11 H -0.223 1.223 12 H -0.191 1.191 13 C 0.100 3.900 14 C -0.239 4.239 15 C 0.030 3.970 16 N -0.299 5.299 17 C -0.117 4.117 18 C -0.093 4.093 19 C -0.126 4.126 20 N -0.137 5.137 21 N -0.180 5.180 22 C -0.046 4.046 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.018 0.982 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.036 0.964 33 H 0.152 0.848 34 H 0.078 0.922 35 H 0.027 0.973 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.191 -5.622 -9.288 11.316 hybrid contribution 0.403 1.045 -0.030 1.120 sum 3.593 -4.577 -9.317 10.985 Atomic orbital electron populations 1.21718 0.94368 1.00485 1.03330 1.22193 0.96899 0.89441 0.99656 1.60148 1.08111 1.14740 1.35778 1.20066 0.96478 0.96025 0.80953 1.21778 1.46622 0.89417 0.95627 0.87430 1.24962 0.96023 0.98848 0.95118 1.69978 1.52587 1.35063 0.97924 0.86468 0.77910 0.85633 0.77298 1.21236 1.22254 1.19051 1.19510 0.85243 0.93025 0.92189 1.19089 0.92350 1.08688 1.03780 1.19877 0.98706 0.87048 0.91390 1.60300 1.21945 1.01645 1.46019 1.22132 0.98987 0.97179 0.93387 1.21896 0.94036 0.97315 0.96017 1.20081 0.96454 1.00103 0.95924 1.77072 1.05397 1.21187 1.10004 1.49080 1.05399 1.38060 1.25462 1.21999 1.04467 0.91937 0.86154 0.91922 0.91750 0.93112 0.92087 0.95172 0.94601 0.98172 0.93464 0.90467 0.96445 0.84798 0.92207 0.97339 0.91882 0.91009 0.91524 0.91098 0.91855 0.90059 0.88882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.89 37.16 0.37 -1.84 16 2 C 0.05 0.78 5.06 -3.82 -0.02 0.77 16 3 N -0.46 -9.71 4.37 -174.60 -0.76 -10.48 16 4 C 0.19 4.68 4.22 -4.98 -0.02 4.65 16 5 C -0.50 -13.66 8.97 -34.44 -0.31 -13.97 16 6 H 0.11 2.91 5.88 -52.49 -0.31 2.60 16 7 C 0.05 1.41 5.46 -17.82 -0.10 1.32 16 8 N -0.91 -27.26 13.29 55.43 0.74 -26.52 16 9 Si 0.90 22.45 29.54 -169.99 -5.02 17.43 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.32 6.68 4.96 -153.41 -0.76 5.92 16 14 C -0.23 -4.41 5.64 -104.79 -0.59 -5.00 16 15 C 0.16 2.76 5.93 -4.98 -0.03 2.73 16 16 N -0.67 -12.12 5.00 -122.42 -0.61 -12.73 16 17 C 0.03 0.50 10.70 60.06 0.64 1.14 16 18 C 0.07 1.34 7.21 -82.44 -0.59 0.75 16 19 C -0.07 -0.90 10.26 36.01 0.37 -0.53 16 20 N -0.31 -6.27 12.56 33.65 0.42 -5.85 16 21 N -0.39 -7.94 4.01 -67.23 -0.27 -8.21 16 22 C 0.10 1.63 9.75 59.85 0.58 2.21 16 23 H 0.06 1.07 6.71 -51.93 -0.35 0.73 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.99 7.97 -51.93 -0.41 0.57 16 27 H 0.03 0.50 5.92 -51.92 -0.31 0.20 16 28 H 0.04 0.94 6.33 -51.93 -0.33 0.61 16 29 H 0.00 0.02 5.66 -51.93 -0.29 -0.28 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.02 0.26 7.24 -51.93 -0.38 -0.11 16 33 H 0.33 5.89 8.81 -39.29 -0.35 5.55 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.01 0.11 8.14 -51.93 -0.42 -0.32 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.82 7.25 -51.93 -0.38 0.44 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.09 1.68 4.57 -51.93 -0.24 1.44 16 LS Contribution 334.19 15.07 5.04 5.04 Total: -1.00 -31.91 334.19 -7.63 -39.54 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -6.70 Total: 3.63 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -0.46 Total: -1.85 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: -0.49 Total: -63.78 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.91 -7.63 -39.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723190755.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.396 kcal (2) G-P(sol) polarization free energy of solvation -31.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds