Wall clock time and date at job start Mon Mar 30 2020 04:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47238 * 2 1 4 4 C 1.46901 * 111.00455 * 72.07991 * 3 2 1 5 5 C 1.50694 * 109.47053 * 199.82483 * 4 3 2 6 6 H 1.08001 * 120.00759 * 5.10576 * 5 4 3 7 7 C 1.37886 * 119.99931 * 185.10564 * 5 4 3 8 8 N 1.31515 * 119.99505 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 119.99957 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47376 * 90.00273 * 9 7 5 11 11 H 1.48499 * 109.47145 * 209.99971 * 9 7 5 12 12 H 1.48502 * 109.47420 * 329.99862 * 9 7 5 13 13 C 1.39206 * 110.99971 * 196.03297 * 3 2 1 14 14 C 1.36169 * 126.22039 * 123.64279 * 13 3 2 15 15 C 1.50703 * 126.09442 * 0.02562 * 14 13 3 16 16 N 1.46899 * 109.47535 * 89.99780 * 15 14 13 17 17 C 1.46895 * 111.00072 * 180.02562 * 16 15 14 18 18 C 1.39777 * 107.81621 * 180.26286 * 14 13 3 19 19 C 1.50701 * 125.84154 * 179.73699 * 18 14 13 20 20 N 1.30843 * 108.32085 * 359.55495 * 18 14 13 21 21 N 1.35246 * 126.22529 * 303.64426 * 13 3 2 22 22 C 1.46508 * 126.03893 * 359.97438 * 21 13 3 23 23 H 1.09003 * 109.46824 * 294.82581 * 1 2 3 24 24 H 1.08990 * 109.46850 * 54.82387 * 1 2 3 25 25 H 1.08993 * 109.47078 * 174.83135 * 1 2 3 26 26 H 1.08994 * 109.47149 * 239.99343 * 2 1 3 27 27 H 1.09008 * 109.47202 * 119.99644 * 2 1 3 28 28 H 1.09004 * 109.46686 * 319.82464 * 4 3 2 29 29 H 1.08997 * 109.47377 * 79.82383 * 4 3 2 30 30 H 0.97004 * 119.99351 * 179.97438 * 8 7 5 31 31 H 1.09005 * 109.46871 * 329.99639 * 15 14 13 32 32 H 1.09003 * 109.47064 * 210.00444 * 15 14 13 33 33 H 1.00896 * 110.99582 * 56.04689 * 16 15 14 34 34 H 1.09001 * 109.47159 * 179.97438 * 17 16 15 35 35 H 1.08999 * 109.47514 * 299.99824 * 17 16 15 36 36 H 1.09000 * 109.46998 * 59.99971 * 17 16 15 37 37 H 1.08998 * 109.47079 * 89.99916 * 19 18 14 38 38 H 1.09001 * 109.47144 * 210.00092 * 19 18 14 39 39 H 1.09001 * 109.46610 * 329.99611 * 19 18 14 40 40 H 1.08997 * 109.46911 * 95.05666 * 22 21 13 41 41 H 1.09002 * 109.47182 * 215.05787 * 22 21 13 42 42 H 1.09005 * 109.47064 * 335.05968 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7974 2.0221 1.3049 5 6 1.8441 3.5200 1.1469 6 1 1.9385 3.9568 0.1637 7 6 1.7661 4.3331 2.2578 8 7 1.6506 3.8013 3.4551 9 14 1.8247 6.1898 2.0621 10 1 0.4457 6.7132 1.8896 11 1 2.4364 6.7960 3.2719 12 1 2.6386 6.5365 0.8694 13 6 3.3636 1.4389 -0.3589 14 6 3.8940 2.1599 -1.3851 15 6 3.1301 3.0441 -2.3369 16 7 3.0666 4.4078 -1.7944 17 6 2.3269 5.2996 -2.6974 18 6 5.2726 1.9294 -1.4020 19 6 6.2547 2.5237 -2.3784 20 7 5.5650 1.1126 -0.4226 21 7 4.3799 0.7848 0.2481 22 6 4.2620 -0.1083 1.4035 23 1 -0.3633 0.4315 0.9327 24 1 -0.3632 0.5920 -0.8399 25 1 -0.3633 -1.0234 -0.0926 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 0.8216 1.7276 1.6914 29 1 2.5744 1.7057 2.0008 30 1 1.5961 4.3733 4.2366 31 1 2.1194 2.6554 -2.4620 32 1 3.6353 3.0603 -3.3026 33 1 3.9912 4.7664 -1.6088 34 1 2.2946 6.3024 -2.2716 35 1 2.8262 5.3316 -3.6658 36 1 1.3108 4.9264 -2.8247 37 1 6.6329 3.4671 -1.9845 38 1 7.0846 1.8325 -2.5251 39 1 5.7569 2.7013 -3.3316 40 1 4.1858 -1.1396 1.0592 41 1 5.1425 -0.0008 2.0371 42 1 3.3701 0.1512 1.9738 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723190755.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:09 Heat of formation + Delta-G solvation = 69.118831 kcal Electronic energy + Delta-G solvation = -21880.356929 eV Core-core repulsion = 18896.661880 eV Total energy + Delta-G solvation = -2983.695049 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.34953 -38.42886 -36.87079 -34.64489 -34.30291 -32.18443 -30.70251 -30.33942 -28.72505 -27.07531 -25.69725 -24.63251 -23.80130 -22.86557 -20.61135 -20.26905 -18.44284 -17.48413 -16.93625 -16.52916 -16.42355 -16.08566 -15.59484 -15.18409 -15.07624 -14.66559 -14.40586 -14.23225 -14.06459 -13.59130 -13.48375 -13.24315 -13.07724 -12.92377 -12.84194 -12.77821 -12.68661 -12.56441 -12.38102 -12.29552 -11.99205 -11.65503 -11.38279 -11.16414 -10.46539 -9.85628 -9.36522 -9.14831 -8.83950 -8.06114 -6.06782 1.00075 1.45078 1.45902 1.61102 1.68367 1.89317 2.52192 3.01284 3.29304 3.61134 3.80546 4.05827 4.16236 4.24102 4.27672 4.35194 4.42541 4.46254 4.55136 4.59365 4.74263 4.78774 4.81762 4.84292 4.93382 5.00041 5.06244 5.12557 5.17669 5.21035 5.29263 5.31447 5.47837 5.75090 5.94717 5.96852 6.08856 6.43280 6.49156 6.73370 6.78639 6.94343 7.24514 7.60998 9.05714 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.012955 B = 0.009612 C = 0.007542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.845958 B = 2912.321730 C = 3711.816380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.043 3.957 3 N -0.464 5.464 4 C 0.204 3.796 5 C -0.500 4.500 6 H 0.113 0.887 7 C -0.004 4.004 8 N -0.948 5.948 9 Si 0.955 3.045 10 H -0.280 1.280 11 H -0.300 1.300 12 H -0.255 1.255 13 C 0.291 3.709 14 C -0.235 4.235 15 C 0.167 3.833 16 N -0.697 5.697 17 C 0.036 3.964 18 C 0.073 3.927 19 C -0.064 4.064 20 N -0.334 5.334 21 N -0.406 5.406 22 C 0.095 3.905 23 H 0.039 0.961 24 H 0.060 0.940 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.034 0.966 28 H 0.018 0.982 29 H -0.024 1.024 30 H 0.254 0.746 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.336 0.664 34 H 0.058 0.942 35 H 0.036 0.964 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.801 -4.795 -12.388 13.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.083 4.083 3 N -0.188 5.188 4 C 0.080 3.920 5 C -0.539 4.539 6 H 0.130 0.870 7 C -0.199 4.199 8 N -0.592 5.592 9 Si 0.782 3.218 10 H -0.207 1.207 11 H -0.227 1.227 12 H -0.179 1.179 13 C 0.071 3.929 14 C -0.247 4.247 15 C 0.038 3.962 16 N -0.328 5.328 17 C -0.113 4.113 18 C -0.093 4.093 19 C -0.122 4.122 20 N -0.158 5.158 21 N -0.192 5.192 22 C -0.046 4.046 23 H 0.058 0.942 24 H 0.079 0.921 25 H 0.103 0.897 26 H 0.094 0.906 27 H 0.052 0.948 28 H 0.036 0.964 29 H -0.006 1.006 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.153 0.847 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.835 -5.348 -11.457 13.213 hybrid contribution 0.226 0.892 0.590 1.093 sum 4.061 -4.456 -10.867 12.428 Atomic orbital electron populations 1.21673 0.93154 1.02421 1.01902 1.22324 0.97857 0.87704 1.00462 1.60022 1.08905 1.16780 1.33103 1.19656 0.94548 0.95214 0.82544 1.22188 1.45072 0.90938 0.95679 0.86964 1.25740 0.96225 1.02983 0.94979 1.70105 1.54222 1.36302 0.98542 0.85564 0.78107 0.80860 0.77258 1.20664 1.22687 1.17885 1.19754 0.85296 0.94436 0.93383 1.19534 0.93150 1.08277 1.03772 1.19807 0.97930 0.86366 0.92090 1.60226 1.22368 1.02410 1.47799 1.22118 0.98607 0.96369 0.94220 1.22627 0.94525 0.96264 0.95917 1.20244 0.95959 1.00410 0.95616 1.77039 1.05594 1.22272 1.10903 1.49273 1.05344 1.38546 1.26049 1.22077 1.03820 0.93050 0.85690 0.94154 0.92069 0.89666 0.90604 0.94809 0.96374 1.00636 0.93753 0.91917 0.93474 0.84671 0.92284 0.94535 0.92417 0.90030 0.90252 0.88848 0.88931 0.89555 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 9.89 71.98 0.71 -3.37 16 2 C 0.04 1.47 5.06 86.30 0.44 1.91 16 3 N -0.46 -19.52 4.37 -706.31 -3.08 -22.61 16 4 C 0.20 10.46 4.22 85.55 0.36 10.82 16 5 C -0.50 -27.86 8.97 25.60 0.23 -27.63 16 6 H 0.11 6.06 5.88 -2.91 -0.02 6.04 16 7 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 8 N -0.95 -57.83 13.29 21.45 0.28 -57.55 16 9 Si 0.96 46.25 29.54 68.60 2.03 48.27 16 10 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 11 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 12 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 13 C 0.29 12.04 4.96 131.43 0.65 12.69 16 14 C -0.23 -8.82 5.64 -19.97 -0.11 -8.93 16 15 C 0.17 5.46 5.93 85.56 0.51 5.97 16 16 N -0.70 -23.92 5.00 -541.23 -2.71 -26.63 16 17 C 0.04 1.00 10.70 127.69 1.37 2.37 16 18 C 0.07 2.53 7.21 43.08 0.31 2.84 16 19 C -0.06 -1.51 10.26 71.24 0.73 -0.78 16 20 N -0.33 -13.05 12.56 -47.44 -0.60 -13.64 16 21 N -0.41 -16.23 4.01 -366.63 -1.47 -17.71 16 22 C 0.09 3.21 9.75 127.77 1.25 4.45 16 23 H 0.04 1.39 6.71 -2.39 -0.02 1.38 16 24 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16 26 H 0.08 2.35 7.97 -2.39 -0.02 2.33 16 27 H 0.03 1.12 5.92 -2.38 -0.01 1.11 16 28 H 0.02 0.99 6.33 -2.39 -0.02 0.98 16 29 H -0.02 -1.34 5.66 -2.39 -0.01 -1.35 16 30 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 31 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 32 H 0.05 1.25 7.24 -2.39 -0.02 1.23 16 33 H 0.34 11.14 8.81 -89.70 -0.79 10.35 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 38 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 39 H 0.09 1.78 7.25 -2.39 -0.02 1.77 16 40 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 42 H 0.07 2.81 4.57 -2.38 -0.01 2.80 16 Total: -1.00 -68.89 334.19 1.58 -67.31 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.23 Total: 21.97 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 6.90 Total: 0.57 kcal Atomic # 7 Polarization: -130.56 SS G_CDS: -7.57 Total: -138.13 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -68.89 1.58 -67.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723190755.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.433 kcal (2) G-P(sol) polarization free energy of solvation -68.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds