Wall clock time and date at job start Mon Mar 30 2020 04:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46892 * 111.00304 * 2 1 4 4 C 1.50693 * 109.47248 * 180.02562 * 3 2 1 5 5 C 1.39773 * 126.09448 * 269.97393 * 4 3 2 6 6 C 1.50703 * 125.83928 * 0.04300 * 5 4 3 7 7 N 1.30843 * 108.32331 * 180.02562 * 5 4 3 8 8 N 1.40059 * 108.38872 * 0.02562 * 7 5 4 9 9 C 1.46501 * 126.04188 * 179.97438 * 8 7 5 10 10 C 1.35247 * 107.91705 * 0.02562 * 8 7 5 11 11 N 1.39209 * 126.22075 * 179.73586 * 10 8 7 12 12 C 1.46897 * 110.99981 * 305.14903 * 11 10 8 13 13 C 1.46899 * 110.99800 * 69.10045 * 11 10 8 14 14 H 1.09001 * 109.47578 * 292.46860 * 13 11 10 15 15 C 1.53005 * 109.47279 * 52.47051 * 13 11 10 16 16 C 1.50706 * 109.47145 * 172.46941 * 13 11 10 17 17 H 1.08004 * 119.99641 * 0.02562 * 16 13 11 18 18 C 1.37872 * 120.00199 * 179.97438 * 16 13 11 19 19 N 1.31515 * 119.99909 * 180.02562 * 18 16 13 20 20 Si 1.86803 * 120.00116 * 0.02562 * 18 16 13 21 21 H 1.48499 * 109.47454 * 89.99107 * 20 18 16 22 22 H 1.48496 * 109.46786 * 209.99615 * 20 18 16 23 23 H 1.48506 * 109.46620 * 329.99512 * 20 18 16 24 24 H 1.09001 * 109.46608 * 299.99420 * 1 2 3 25 25 H 1.08994 * 109.47145 * 59.99719 * 1 2 3 26 26 H 1.09004 * 109.47282 * 180.02562 * 1 2 3 27 27 H 1.00893 * 110.99809 * 123.95930 * 2 1 3 28 28 H 1.09002 * 109.47268 * 60.00126 * 3 2 1 29 29 H 1.09001 * 109.47080 * 300.00282 * 3 2 1 30 30 H 1.08997 * 109.47013 * 270.00243 * 6 5 4 31 31 H 1.09004 * 109.46750 * 29.99994 * 6 5 4 32 32 H 1.09000 * 109.47329 * 149.99622 * 6 5 4 33 33 H 1.08995 * 109.47735 * 270.00030 * 9 8 7 34 34 H 1.09001 * 109.46889 * 29.99802 * 9 8 7 35 35 H 1.09000 * 109.47431 * 149.99317 * 9 8 7 36 36 H 1.08999 * 109.47524 * 59.99849 * 12 11 10 37 37 H 1.08998 * 109.47308 * 179.97438 * 12 11 10 38 38 H 1.09005 * 109.46913 * 299.99958 * 12 11 10 39 39 H 1.08999 * 109.47322 * 179.97438 * 15 13 11 40 40 H 1.08992 * 109.46953 * 300.00083 * 15 13 11 41 41 H 1.08999 * 109.46746 * 59.99921 * 15 13 11 42 42 H 0.97004 * 119.99634 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 3.5019 1.3311 -0.0006 5 6 4.3256 1.3094 1.1284 6 6 3.8590 1.3214 2.5614 7 7 5.5710 1.2766 0.7286 8 7 5.5855 1.2767 -0.6719 9 6 6.7785 1.2460 -1.5216 10 6 4.3034 1.3114 -1.1013 11 7 3.8803 1.3285 -2.4274 12 6 4.5007 2.4379 -3.1637 13 6 4.1535 0.0430 -3.0838 14 1 5.2306 -0.0936 -3.1810 15 6 3.5691 -1.0936 -2.2426 16 6 3.5204 0.0327 -4.4514 17 1 2.9704 0.8950 -4.7983 18 6 3.6441 -1.0772 -5.2599 19 7 3.0920 -1.0860 -6.4536 20 14 4.5960 -2.5684 -4.6601 21 1 3.6736 -3.4932 -3.9537 22 1 5.2044 -3.2668 -5.8208 23 1 5.6668 -2.1303 -3.7290 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8306 -0.5262 0.7813 28 1 1.6461 1.8947 0.8900 29 1 1.6460 1.8947 -0.8900 30 1 3.7733 2.3516 2.9069 31 1 2.8871 0.8327 2.6311 32 1 4.5789 0.7885 3.1824 33 1 7.1013 2.2656 -1.7320 34 1 7.5770 0.7110 -1.0075 35 1 6.5451 0.7383 -2.4575 36 1 5.5847 2.3258 -3.1442 37 1 4.1533 2.4277 -4.1968 38 1 4.2248 3.3834 -2.6966 39 1 3.7715 -2.0474 -2.7298 40 1 4.0270 -1.0860 -1.2536 41 1 2.4921 -0.9569 -2.1454 42 1 3.1788 -1.8670 -7.0223 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723191365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:56 Heat of formation + Delta-G solvation = 102.304666 kcal Electronic energy + Delta-G solvation = -21955.784518 eV Core-core repulsion = 18973.528515 eV Total energy + Delta-G solvation = -2982.256003 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.17048 -37.06852 -35.77557 -33.36640 -32.58088 -30.40818 -29.91806 -29.19064 -26.84368 -25.04013 -24.62757 -24.26561 -22.68076 -21.06056 -19.36152 -18.77133 -16.81249 -16.09886 -15.71605 -15.44721 -14.78835 -14.62852 -14.06625 -14.03527 -13.58499 -13.38782 -13.30375 -12.95208 -12.56474 -12.38966 -12.21389 -12.07422 -11.89608 -11.84674 -11.70687 -11.49123 -11.32977 -10.94542 -10.67813 -10.62859 -10.21360 -10.08320 -9.53531 -9.20512 -8.65617 -8.60240 -8.08512 -7.81562 -7.71443 -6.12446 -4.11523 2.25986 2.85769 3.04357 3.25179 3.33541 3.35161 4.34894 4.42273 4.74009 4.85344 5.17653 5.29960 5.34487 5.35978 5.50780 5.58139 5.58963 5.68441 5.72522 5.82161 5.83428 5.88011 5.94980 6.09847 6.19076 6.32816 6.42759 6.51075 6.52679 6.61364 6.66765 6.80576 7.03751 7.09895 7.35129 7.42198 7.60834 7.75764 7.77790 8.08317 8.18254 8.57408 8.92952 9.48492 10.99985 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.018086 B = 0.007982 C = 0.006690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.757598 B = 3506.842734 C = 4184.280049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.679 5.679 3 C 0.154 3.846 4 C -0.230 4.230 5 C 0.074 3.926 6 C -0.066 4.066 7 N -0.310 5.310 8 N -0.396 5.396 9 C 0.092 3.908 10 C 0.301 3.699 11 N -0.452 5.452 12 C 0.025 3.975 13 C 0.187 3.813 14 H -0.002 1.002 15 C -0.140 4.140 16 C -0.504 4.504 17 H 0.085 0.915 18 C 0.075 3.925 19 N -0.895 5.895 20 Si 0.886 3.114 21 H -0.276 1.276 22 H -0.297 1.297 23 H -0.273 1.273 24 H 0.011 0.989 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.333 0.667 28 H 0.023 0.977 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.022 0.978 37 H 0.095 0.905 38 H 0.054 0.946 39 H 0.035 0.965 40 H 0.025 0.975 41 H 0.084 0.916 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.072 4.639 13.701 14.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.309 5.309 3 C 0.025 3.975 4 C -0.242 4.242 5 C -0.092 4.092 6 C -0.125 4.125 7 N -0.134 5.134 8 N -0.182 5.182 9 C -0.050 4.050 10 C 0.081 3.919 11 N -0.175 5.175 12 C -0.122 4.122 13 C 0.082 3.918 14 H 0.015 0.985 15 C -0.197 4.197 16 C -0.543 4.543 17 H 0.103 0.897 18 C -0.127 4.127 19 N -0.533 5.533 20 Si 0.716 3.284 21 H -0.203 1.203 22 H -0.225 1.225 23 H -0.199 1.199 24 H 0.030 0.970 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.150 0.850 28 H 0.041 0.959 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.040 0.960 37 H 0.114 0.886 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.044 0.956 41 H 0.103 0.897 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.906 4.501 13.058 13.943 hybrid contribution 0.493 -0.806 0.693 1.172 sum 2.399 3.695 13.751 14.440 Atomic orbital electron populations 1.22151 0.88421 1.01335 0.99898 1.60369 1.06624 1.14551 1.49389 1.19944 0.88641 0.88995 0.99963 1.19179 0.95522 1.19610 0.89924 1.21955 0.90709 1.00309 0.96215 1.20079 1.00904 1.02366 0.89139 1.77112 1.20278 1.27131 0.88862 1.49233 1.06202 1.57997 1.04735 1.22106 0.86063 1.02774 0.94037 1.19910 0.82600 0.96889 0.92479 1.59945 1.54651 1.06443 0.96465 1.22496 0.96310 0.92401 1.00999 1.19880 0.94112 0.83562 0.94242 0.98482 1.22138 1.03941 0.97064 0.96602 1.20824 1.34190 1.03154 0.96090 0.89733 1.24842 0.95115 0.98018 0.94723 1.69865 1.44339 1.30130 1.08964 0.86901 0.80521 0.83792 0.77138 1.20309 1.22514 1.19880 0.97004 0.91534 0.91983 0.85048 0.95892 0.89928 0.91016 0.91140 0.91278 0.91188 0.89891 0.88903 0.95965 0.88618 0.92696 0.94682 0.95601 0.89742 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.70 60.07 0.64 1.05 16 2 N -0.68 -10.30 6.05 -122.43 -0.74 -11.04 16 3 C 0.15 2.39 5.78 -4.98 -0.03 2.36 16 4 C -0.23 -3.99 5.47 -104.79 -0.57 -4.57 16 5 C 0.07 1.20 7.21 -82.44 -0.59 0.61 16 6 C -0.07 -0.76 10.12 36.01 0.36 -0.40 16 7 N -0.31 -5.57 12.56 33.65 0.42 -5.15 16 8 N -0.40 -7.23 4.02 -67.24 -0.27 -7.50 16 9 C 0.09 1.42 9.63 59.85 0.58 1.99 16 10 C 0.30 5.76 3.83 -153.41 -0.59 5.17 16 11 N -0.45 -9.31 4.61 -174.79 -0.81 -10.12 16 12 C 0.03 0.46 9.10 60.06 0.55 1.01 16 13 C 0.19 4.37 1.43 -68.86 -0.10 4.27 16 14 H 0.00 -0.05 4.77 -51.93 -0.25 -0.30 16 15 C -0.14 -3.23 8.38 37.16 0.31 -2.92 16 16 C -0.50 -13.63 8.48 -34.44 -0.29 -13.92 16 17 H 0.08 2.47 7.19 -52.48 -0.38 2.09 16 18 C 0.08 2.12 5.45 -17.82 -0.10 2.02 16 19 N -0.90 -26.61 13.96 55.43 0.77 -25.84 16 20 Si 0.89 21.92 24.37 -169.99 -4.14 17.78 16 21 H -0.28 -6.79 6.87 56.52 0.39 -6.41 16 22 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.27 -6.55 6.53 56.52 0.37 -6.18 16 24 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.33 4.65 8.81 -39.30 -0.35 4.30 16 28 H 0.02 0.31 7.92 -51.93 -0.41 -0.10 16 29 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.71 7.91 -51.93 -0.41 0.30 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.93 7.76 -51.93 -0.40 0.52 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.09 1.56 4.79 -51.93 -0.25 1.31 16 36 H 0.02 0.37 5.12 -51.93 -0.27 0.11 16 37 H 0.10 1.89 6.58 -51.93 -0.34 1.55 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.03 0.84 3.27 -51.93 -0.17 0.67 16 40 H 0.02 0.57 6.93 -51.93 -0.36 0.21 16 41 H 0.08 1.99 7.34 -51.93 -0.38 1.61 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 323.50 15.07 4.88 4.88 Total: -1.00 -30.89 323.50 -6.25 -37.14 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.53 Total: 3.19 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 0.17 Total: -3.33 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: -0.62 Total: -59.64 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.14 Total: 17.78 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.89 -6.25 -37.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723191365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.440 kcal (2) G-P(sol) polarization free energy of solvation -30.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds