Wall clock time and date at job start Mon Mar 30 2020 04:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46892 * 111.00304 * 2 1 4 4 C 1.50693 * 109.47248 * 180.02562 * 3 2 1 5 5 C 1.39773 * 126.09448 * 269.97393 * 4 3 2 6 6 C 1.50703 * 125.83928 * 0.04300 * 5 4 3 7 7 N 1.30843 * 108.32331 * 180.02562 * 5 4 3 8 8 N 1.40059 * 108.38872 * 0.02562 * 7 5 4 9 9 C 1.46501 * 126.04188 * 179.97438 * 8 7 5 10 10 C 1.35247 * 107.91705 * 0.02562 * 8 7 5 11 11 N 1.39209 * 126.22075 * 179.73586 * 10 8 7 12 12 C 1.46897 * 110.99981 * 305.14903 * 11 10 8 13 13 C 1.46899 * 110.99800 * 69.10045 * 11 10 8 14 14 H 1.09001 * 109.47578 * 292.46860 * 13 11 10 15 15 C 1.53005 * 109.47279 * 52.47051 * 13 11 10 16 16 C 1.50706 * 109.47145 * 172.46941 * 13 11 10 17 17 H 1.08004 * 119.99641 * 0.02562 * 16 13 11 18 18 C 1.37872 * 120.00199 * 179.97438 * 16 13 11 19 19 N 1.31515 * 119.99909 * 180.02562 * 18 16 13 20 20 Si 1.86803 * 120.00116 * 0.02562 * 18 16 13 21 21 H 1.48499 * 109.47454 * 89.99107 * 20 18 16 22 22 H 1.48496 * 109.46786 * 209.99615 * 20 18 16 23 23 H 1.48506 * 109.46620 * 329.99512 * 20 18 16 24 24 H 1.09001 * 109.46608 * 299.99420 * 1 2 3 25 25 H 1.08994 * 109.47145 * 59.99719 * 1 2 3 26 26 H 1.09004 * 109.47282 * 180.02562 * 1 2 3 27 27 H 1.00893 * 110.99809 * 123.95930 * 2 1 3 28 28 H 1.09002 * 109.47268 * 60.00126 * 3 2 1 29 29 H 1.09001 * 109.47080 * 300.00282 * 3 2 1 30 30 H 1.08997 * 109.47013 * 270.00243 * 6 5 4 31 31 H 1.09004 * 109.46750 * 29.99994 * 6 5 4 32 32 H 1.09000 * 109.47329 * 149.99622 * 6 5 4 33 33 H 1.08995 * 109.47735 * 270.00030 * 9 8 7 34 34 H 1.09001 * 109.46889 * 29.99802 * 9 8 7 35 35 H 1.09000 * 109.47431 * 149.99317 * 9 8 7 36 36 H 1.08999 * 109.47524 * 59.99849 * 12 11 10 37 37 H 1.08998 * 109.47308 * 179.97438 * 12 11 10 38 38 H 1.09005 * 109.46913 * 299.99958 * 12 11 10 39 39 H 1.08999 * 109.47322 * 179.97438 * 15 13 11 40 40 H 1.08992 * 109.46953 * 300.00083 * 15 13 11 41 41 H 1.08999 * 109.46746 * 59.99921 * 15 13 11 42 42 H 0.97004 * 119.99634 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 3.5019 1.3311 -0.0006 5 6 4.3256 1.3094 1.1284 6 6 3.8590 1.3214 2.5614 7 7 5.5710 1.2766 0.7286 8 7 5.5855 1.2767 -0.6719 9 6 6.7785 1.2460 -1.5216 10 6 4.3034 1.3114 -1.1013 11 7 3.8803 1.3285 -2.4274 12 6 4.5007 2.4379 -3.1637 13 6 4.1535 0.0430 -3.0838 14 1 5.2306 -0.0936 -3.1810 15 6 3.5691 -1.0936 -2.2426 16 6 3.5204 0.0327 -4.4514 17 1 2.9704 0.8950 -4.7983 18 6 3.6441 -1.0772 -5.2599 19 7 3.0920 -1.0860 -6.4536 20 14 4.5960 -2.5684 -4.6601 21 1 3.6736 -3.4932 -3.9537 22 1 5.2044 -3.2668 -5.8208 23 1 5.6668 -2.1303 -3.7290 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8306 -0.5262 0.7813 28 1 1.6461 1.8947 0.8900 29 1 1.6460 1.8947 -0.8900 30 1 3.7733 2.3516 2.9069 31 1 2.8871 0.8327 2.6311 32 1 4.5789 0.7885 3.1824 33 1 7.1013 2.2656 -1.7320 34 1 7.5770 0.7110 -1.0075 35 1 6.5451 0.7383 -2.4575 36 1 5.5847 2.3258 -3.1442 37 1 4.1533 2.4277 -4.1968 38 1 4.2248 3.3834 -2.6966 39 1 3.7715 -2.0474 -2.7298 40 1 4.0270 -1.0860 -1.2536 41 1 2.4921 -0.9569 -2.1454 42 1 3.1788 -1.8670 -7.0223 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723191365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:55 Heat of formation + Delta-G solvation = 79.161953 kcal Electronic energy + Delta-G solvation = -21956.788062 eV Core-core repulsion = 18973.528515 eV Total energy + Delta-G solvation = -2983.259547 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.52190 -38.67553 -36.95052 -35.00395 -34.21385 -32.21294 -31.22209 -30.35795 -28.16041 -26.92633 -25.91834 -25.71688 -23.87486 -22.82822 -20.67826 -20.17608 -18.83127 -17.51631 -17.34897 -16.69390 -16.36775 -16.08544 -15.63966 -15.24201 -15.11985 -14.79741 -14.45068 -14.27491 -14.09516 -13.89793 -13.61882 -13.45169 -13.30225 -13.09766 -12.91890 -12.74069 -12.67205 -12.56822 -12.42689 -12.35441 -12.08939 -11.49193 -11.44257 -11.19857 -10.75682 -9.95719 -9.43154 -9.25422 -8.97786 -8.30184 -6.32476 0.88579 1.28566 1.30575 1.39811 1.59547 1.78215 2.27858 2.87727 3.04574 3.54207 3.73883 4.09682 4.14551 4.21985 4.30720 4.36910 4.41769 4.45517 4.51161 4.63805 4.66419 4.73967 4.75817 4.77556 4.86345 4.90032 4.93463 5.04656 5.08415 5.17550 5.19355 5.27039 5.47926 5.62459 5.65907 5.88045 5.96574 6.28541 6.33439 6.70369 6.71679 6.77536 6.86117 7.30759 8.85773 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.018086 B = 0.007982 C = 0.006690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.757598 B = 3506.842734 C = 4184.280049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.699 5.699 3 C 0.161 3.839 4 C -0.230 4.230 5 C 0.077 3.923 6 C -0.064 4.064 7 N -0.324 5.324 8 N -0.404 5.404 9 C 0.088 3.912 10 C 0.274 3.726 11 N -0.460 5.460 12 C 0.028 3.972 13 C 0.196 3.804 14 H -0.004 1.004 15 C -0.125 4.125 16 C -0.500 4.500 17 H 0.049 0.951 18 C 0.025 3.975 19 N -0.939 5.939 20 Si 0.940 3.060 21 H -0.271 1.271 22 H -0.295 1.295 23 H -0.260 1.260 24 H 0.035 0.965 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.341 0.659 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.036 0.964 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.026 0.974 40 H 0.034 0.966 41 H 0.075 0.925 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.642 4.438 16.493 17.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.330 5.330 3 C 0.031 3.969 4 C -0.243 4.243 5 C -0.089 4.089 6 C -0.123 4.123 7 N -0.149 5.149 8 N -0.191 5.191 9 C -0.053 4.053 10 C 0.054 3.946 11 N -0.184 5.184 12 C -0.119 4.119 13 C 0.090 3.910 14 H 0.014 0.986 15 C -0.182 4.182 16 C -0.538 4.538 17 H 0.068 0.932 18 C -0.173 4.173 19 N -0.580 5.580 20 Si 0.768 3.232 21 H -0.198 1.198 22 H -0.223 1.223 23 H -0.184 1.184 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.159 0.841 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.055 0.945 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.045 0.955 40 H 0.053 0.947 41 H 0.094 0.906 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.485 4.315 15.871 16.634 hybrid contribution 0.271 -0.634 -0.130 0.702 sum 2.755 3.681 15.741 16.399 Atomic orbital electron populations 1.22124 0.87129 1.01940 1.00230 1.60282 1.08033 1.14476 1.50240 1.19849 0.87618 0.89408 1.00016 1.19538 0.96429 1.18395 0.89922 1.22627 0.89779 0.98615 0.97922 1.20251 1.01869 1.03934 0.86222 1.77105 1.21369 1.27797 0.88589 1.49366 1.06360 1.58208 1.05122 1.22208 0.85764 1.04131 0.93216 1.19914 0.83610 0.99196 0.91837 1.59763 1.55654 1.05465 0.97480 1.22464 0.97068 0.92693 0.99680 1.19609 0.93386 0.85485 0.92547 0.98649 1.21943 1.03296 0.96242 0.96732 1.20993 1.33120 1.01755 0.97930 0.93237 1.25543 0.96167 1.00830 0.94755 1.69992 1.46397 1.31181 1.10383 0.86000 0.79688 0.80541 0.76937 1.19755 1.22262 1.18424 0.94615 0.93118 0.91270 0.84145 0.93221 0.92364 0.89199 0.89366 0.90380 0.89183 0.88276 0.90576 0.94519 0.90912 0.90876 0.95539 0.94714 0.90641 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.83 10.70 127.69 1.37 2.20 16 2 N -0.70 -19.87 6.05 -541.24 -3.28 -23.15 16 3 C 0.16 4.68 5.78 85.56 0.49 5.17 16 4 C -0.23 -7.54 5.47 -19.98 -0.11 -7.65 16 5 C 0.08 2.27 7.21 43.08 0.31 2.58 16 6 C -0.06 -1.23 10.12 71.24 0.72 -0.51 16 7 N -0.32 -10.87 12.56 -47.44 -0.60 -11.47 16 8 N -0.40 -14.04 4.02 -366.65 -1.47 -15.51 16 9 C 0.09 2.56 9.63 127.77 1.23 3.79 16 10 C 0.27 10.13 3.83 131.43 0.50 10.63 16 11 N -0.46 -18.93 4.61 -706.92 -3.26 -22.19 16 12 C 0.03 1.03 9.10 127.69 1.16 2.19 16 13 C 0.20 9.11 1.43 44.17 0.06 9.18 16 14 H 0.00 -0.18 4.77 -2.39 -0.01 -0.19 16 15 C -0.12 -5.63 8.38 71.98 0.60 -5.03 16 16 C -0.50 -27.66 8.48 25.60 0.22 -27.44 16 17 H 0.05 3.03 7.19 -2.91 -0.02 3.01 16 18 C 0.03 1.45 5.45 84.65 0.46 1.91 16 19 N -0.94 -57.29 13.96 21.45 0.30 -56.99 16 20 Si 0.94 45.06 24.37 68.60 1.67 46.74 16 21 H -0.27 -12.72 6.87 99.48 0.68 -12.03 16 22 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 23 H -0.26 -11.76 6.53 99.48 0.65 -11.11 16 24 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.34 8.62 8.81 -89.70 -0.79 7.83 16 28 H 0.05 1.17 7.92 -2.39 -0.02 1.15 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.09 1.39 7.91 -2.38 -0.02 1.37 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.09 2.21 7.76 -2.39 -0.02 2.19 16 34 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.08 2.47 4.79 -2.39 -0.01 2.46 16 36 H 0.04 1.22 5.12 -2.39 -0.01 1.21 16 37 H 0.07 2.99 6.58 -2.39 -0.02 2.97 16 38 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 39 H 0.03 1.22 3.27 -2.39 -0.01 1.22 16 40 H 0.03 1.48 6.93 -2.39 -0.02 1.46 16 41 H 0.07 3.52 7.34 -2.39 -0.02 3.50 16 42 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -66.64 323.50 0.54 -66.09 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.15 Total: 19.46 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: 7.02 Total: -2.99 kcal Atomic # 7 Polarization: -120.99 SS G_CDS: -8.31 Total: -129.30 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.67 Total: 46.74 kcal Total: -66.64 0.54 -66.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723191365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.257 kcal (2) G-P(sol) polarization free energy of solvation -66.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds