Wall clock time and date at job start Mon Mar 30 2020 04:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53120 * 109.52087 * 2 1 4 4 C 1.53041 * 109.27545 * 182.43846 * 3 2 1 5 5 N 1.46852 * 109.52234 * 59.17816 * 4 3 2 6 6 C 1.46898 * 111.00104 * 174.15951 * 5 4 3 7 7 C 1.53000 * 109.47281 * 170.00176 * 6 5 4 8 8 N 1.46900 * 109.46923 * 174.85266 * 7 6 5 9 9 C 1.48562 * 110.99517 * 175.90509 * 8 7 6 10 10 C 1.54385 * 104.59217 * 200.95593 * 9 8 7 11 11 C 1.54258 * 105.06017 * 23.85278 * 10 9 8 12 12 H 1.08998 * 110.32554 * 241.00494 * 11 10 9 13 13 C 1.50701 * 110.32201 * 118.89130 * 11 10 9 14 14 H 1.07998 * 120.00402 * 241.45177 * 13 11 10 15 15 C 1.37880 * 119.99546 * 61.45732 * 13 11 10 16 16 N 1.31515 * 119.99815 * 179.97438 * 15 13 11 17 17 Si 1.86800 * 120.00211 * 359.97438 * 15 13 11 18 18 H 1.48502 * 109.46816 * 270.00107 * 17 15 13 19 19 H 1.48492 * 109.47364 * 149.99967 * 17 15 13 20 20 H 1.48500 * 109.47098 * 29.99571 * 17 15 13 21 21 C 1.48555 * 111.00142 * 60.48492 * 8 7 6 22 22 C 1.46850 * 111.19819 * 298.25910 * 5 4 3 23 23 C 1.53034 * 109.52629 * 61.74043 * 22 5 4 24 24 H 1.09000 * 109.46683 * 60.00340 * 1 2 3 25 25 H 1.09002 * 109.46697 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47174 * 299.99919 * 1 2 3 27 27 H 1.09001 * 109.57257 * 120.15788 * 2 1 3 28 28 H 1.09000 * 109.50465 * 62.49836 * 3 2 1 29 29 H 1.09002 * 109.53378 * 302.39845 * 3 2 1 30 30 H 1.08998 * 109.46424 * 299.16611 * 4 3 2 31 31 H 1.08996 * 109.46042 * 179.18703 * 4 3 2 32 32 H 1.09002 * 109.46986 * 49.99553 * 6 5 4 33 33 H 1.09004 * 109.46745 * 290.00325 * 6 5 4 34 34 H 1.08997 * 109.46844 * 54.84730 * 7 6 5 35 35 H 1.09007 * 109.46870 * 294.85058 * 7 6 5 36 36 H 1.09000 * 110.41008 * 82.18388 * 9 8 7 37 37 H 1.08992 * 110.41567 * 319.73539 * 9 8 7 38 38 H 1.08999 * 110.32520 * 264.95820 * 10 9 8 39 39 H 1.08995 * 110.40502 * 142.79626 * 10 9 8 40 40 H 0.96997 * 120.00086 * 180.02562 * 16 15 13 41 41 H 1.09003 * 110.41517 * 40.26209 * 21 8 7 42 42 H 1.08993 * 110.41452 * 277.81373 * 21 8 7 43 43 H 1.08999 * 109.46368 * 181.75972 * 22 5 4 44 44 H 1.09000 * 109.45972 * 301.72460 * 22 5 4 45 45 H 1.08996 * 109.50764 * 180.88030 * 23 22 5 46 46 H 1.08999 * 109.53244 * 60.78144 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0417 1.4432 0.0000 4 6 3.5709 1.4371 -0.0615 5 7 4.0103 0.7429 -1.2787 6 6 5.4671 0.8378 -1.4420 7 6 5.9159 -0.0954 -2.5684 8 7 7.3522 0.0899 -2.8146 9 6 7.8454 -0.8700 -3.8356 10 6 9.3696 -0.9397 -3.5999 11 6 9.5674 -0.5180 -2.1293 12 1 10.1838 0.3792 -2.0724 13 6 10.2005 -1.6378 -1.3444 14 1 9.6735 -2.0782 -0.5108 15 6 11.4525 -2.1002 -1.6904 16 7 12.0052 -3.0771 -1.0051 17 14 12.3637 -1.3390 -3.1325 18 1 12.0212 -2.0728 -4.3773 19 1 13.8269 -1.4243 -2.8942 20 1 11.9671 0.0852 -3.2725 21 6 8.1461 -0.2290 -1.6002 22 6 3.5708 -0.6583 -1.2789 23 6 2.0418 -0.7148 -1.2537 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8952 -0.5160 0.8880 28 1 1.7162 1.9447 0.9113 29 1 1.6447 1.9706 -0.8674 30 1 3.9675 0.9221 0.8135 31 1 3.9378 2.4633 -0.0762 32 1 5.9566 0.5470 -0.5125 33 1 5.7388 1.8638 -1.6902 34 1 5.3587 0.1366 -3.4760 35 1 5.7271 -1.1296 -2.2803 36 1 7.6324 -0.5008 -4.8388 37 1 7.3925 -1.8501 -3.6862 38 1 9.8874 -0.2485 -4.2649 39 1 9.7320 -1.9559 -3.7545 40 1 12.8862 -3.4022 -1.2482 41 1 7.7402 -1.1088 -1.1008 42 1 8.1596 0.6227 -0.9203 43 1 3.9378 -1.1539 -2.1776 44 1 3.9675 -1.1634 -0.3982 45 1 1.7162 -1.7548 -1.2381 46 1 1.6442 -0.2223 -2.1411 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723469143.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:41 Heat of formation + Delta-G solvation = -4.796782 kcal Electronic energy + Delta-G solvation = -20957.063389 eV Core-core repulsion = 18073.703462 eV Total energy + Delta-G solvation = -2883.359927 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.49561 -38.16454 -35.17062 -33.09698 -31.47826 -30.89474 -29.11015 -28.18997 -26.31718 -24.38157 -23.50612 -22.41292 -21.15000 -20.26823 -19.81901 -19.14628 -16.64061 -16.20027 -15.47167 -15.18484 -14.86442 -14.66759 -14.45078 -14.21653 -13.88892 -13.60312 -13.23278 -12.90650 -12.59481 -12.51219 -12.19474 -12.12145 -11.89194 -11.81731 -11.33824 -11.24322 -11.01568 -10.88860 -10.68447 -10.55184 -10.45586 -10.38172 -10.24742 -10.10693 -9.81033 -9.50937 -8.96969 -8.56729 -8.30857 -7.93363 -6.08441 -4.07755 3.29313 3.38690 3.42752 3.78941 4.42264 4.55442 4.59174 4.64474 4.71097 5.01551 5.17429 5.21302 5.23230 5.29218 5.35835 5.39360 5.46842 5.48751 5.55390 5.58075 5.70914 5.73122 5.80107 5.81187 5.88871 5.93020 5.96620 5.99851 6.02175 6.10599 6.16718 6.23081 6.28717 6.32501 6.60432 6.73748 6.81834 7.04132 7.06626 7.09109 7.32551 7.47366 7.61935 7.82673 8.51007 8.93960 9.54166 11.04575 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.039905 B = 0.003580 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.490854 B = 7819.051205 C = 7970.505209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.110 4.110 4 C 0.055 3.945 5 N -0.537 5.537 6 C 0.059 3.941 7 C 0.046 3.954 8 N -0.517 5.517 9 C 0.043 3.957 10 C -0.134 4.134 11 C 0.013 3.987 12 H 0.036 0.964 13 C -0.513 4.513 14 H 0.071 0.929 15 C 0.070 3.930 16 N -0.902 5.902 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.294 1.294 20 H -0.262 1.262 21 C 0.050 3.950 22 C 0.047 3.953 23 C -0.110 4.110 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.036 0.964 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.032 0.968 36 H 0.066 0.934 37 H 0.038 0.962 38 H 0.047 0.953 39 H 0.070 0.930 40 H 0.263 0.737 41 H 0.040 0.960 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.032 0.968 45 H 0.064 0.936 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.206 7.043 -0.723 21.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.147 4.147 4 C -0.073 4.073 5 N -0.262 5.262 6 C -0.068 4.068 7 C -0.083 4.083 8 N -0.242 5.242 9 C -0.085 4.085 10 C -0.172 4.172 11 C -0.007 4.007 12 H 0.054 0.946 13 C -0.551 4.551 14 H 0.089 0.911 15 C -0.131 4.131 16 N -0.541 5.541 17 Si 0.708 3.292 18 H -0.203 1.203 19 H -0.220 1.220 20 H -0.187 1.187 21 C -0.077 4.077 22 C -0.081 4.081 23 C -0.148 4.148 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.085 0.915 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.050 0.950 45 H 0.082 0.918 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.204 7.720 -1.270 21.666 hybrid contribution 0.863 -1.043 0.247 1.376 sum -19.341 6.677 -1.023 20.487 Atomic orbital electron populations 1.21807 0.95221 1.01552 1.01656 1.21201 0.95485 0.96372 0.98397 1.21635 0.94744 0.96397 1.01969 1.22070 0.95603 0.99055 0.90550 1.61994 1.12801 1.13996 1.37402 1.22099 0.85940 1.01233 0.97557 1.22320 0.90502 0.96954 0.98534 1.65374 1.01950 1.48415 1.08415 1.22970 0.96598 0.93579 0.95315 1.22810 0.93580 1.01207 0.99631 1.19876 0.92275 0.97287 0.91245 0.94621 1.21061 1.01869 1.16672 1.15481 0.91053 1.25002 0.97118 0.94478 0.96535 1.69908 1.16501 1.27144 1.40511 0.86888 0.78404 0.80824 0.83044 1.20271 1.22040 1.18656 1.23116 0.94886 0.98343 0.91389 1.22213 0.95455 0.89240 1.01206 1.21648 0.94881 1.00084 0.98210 0.92626 0.92827 0.92874 0.91634 0.91772 0.91112 0.94994 0.90744 0.94570 0.89851 0.90590 0.94941 0.91538 0.94374 0.93419 0.91098 0.92676 0.94202 0.91791 0.90111 0.95018 0.91765 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.20 37.16 0.34 -0.72 16 2 C -0.10 -0.85 2.79 -90.49 -0.25 -1.10 16 3 C -0.11 -0.99 5.38 -26.65 -0.14 -1.13 16 4 C 0.06 0.60 5.42 -3.83 -0.02 0.58 16 5 N -0.54 -6.61 4.81 -234.67 -1.13 -7.73 16 6 C 0.06 0.83 5.01 -3.83 -0.02 0.81 16 7 C 0.05 0.69 3.94 -3.82 -0.02 0.68 16 8 N -0.52 -9.39 5.44 -229.97 -1.25 -10.64 16 9 C 0.04 0.80 6.49 -2.18 -0.01 0.78 16 10 C -0.13 -2.90 4.62 -25.35 -0.12 -3.02 16 11 C 0.01 0.30 2.51 -90.39 -0.23 0.07 16 12 H 0.04 0.88 7.28 -51.93 -0.38 0.50 16 13 C -0.51 -14.38 8.95 -34.44 -0.31 -14.68 16 14 H 0.07 2.17 7.83 -52.49 -0.41 1.76 16 15 C 0.07 2.02 5.34 -17.82 -0.10 1.92 16 16 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 17 Si 0.88 21.77 24.63 -169.99 -4.19 17.58 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 20 H -0.26 -6.26 6.48 56.52 0.37 -5.89 16 21 C 0.05 1.02 4.91 -2.18 -0.01 1.01 16 22 C 0.05 0.54 4.86 -3.83 -0.02 0.53 16 23 C -0.11 -1.06 5.38 -26.65 -0.14 -1.20 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 32 H 0.04 0.54 7.16 -51.93 -0.37 0.17 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.03 0.51 6.39 -51.93 -0.33 0.17 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.04 0.69 7.91 -51.93 -0.41 0.28 16 38 H 0.05 0.99 7.48 -51.93 -0.39 0.60 16 39 H 0.07 1.64 6.46 -51.93 -0.34 1.31 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.04 0.86 7.53 -51.93 -0.39 0.47 16 42 H 0.06 1.25 7.79 -51.93 -0.40 0.84 16 43 H 0.08 0.97 5.93 -51.93 -0.31 0.66 16 44 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 338.37 15.07 5.10 5.10 Total: -1.00 -29.33 338.37 -10.55 -39.89 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -8.82 Total: -1.88 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -1.04 Total: -15.48 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: -1.61 Total: -45.22 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.19 Total: 17.58 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.33 -10.55 -39.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723469143.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.090 kcal (2) G-P(sol) polarization free energy of solvation -29.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds