Wall clock time and date at job start Mon Mar 30 2020 04:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53120 * 109.52087 * 2 1 4 4 C 1.53041 * 109.27545 * 182.43846 * 3 2 1 5 5 N 1.46852 * 109.52234 * 59.17816 * 4 3 2 6 6 C 1.46898 * 111.00104 * 174.15951 * 5 4 3 7 7 C 1.53000 * 109.47281 * 170.00176 * 6 5 4 8 8 N 1.46900 * 109.46923 * 174.85266 * 7 6 5 9 9 C 1.48562 * 110.99517 * 175.90509 * 8 7 6 10 10 C 1.54385 * 104.59217 * 200.95593 * 9 8 7 11 11 C 1.54258 * 105.06017 * 23.85278 * 10 9 8 12 12 H 1.08998 * 110.32554 * 241.00494 * 11 10 9 13 13 C 1.50701 * 110.32201 * 118.89130 * 11 10 9 14 14 H 1.07998 * 120.00402 * 241.45177 * 13 11 10 15 15 C 1.37880 * 119.99546 * 61.45732 * 13 11 10 16 16 N 1.31515 * 119.99815 * 179.97438 * 15 13 11 17 17 Si 1.86800 * 120.00211 * 359.97438 * 15 13 11 18 18 H 1.48502 * 109.46816 * 270.00107 * 17 15 13 19 19 H 1.48492 * 109.47364 * 149.99967 * 17 15 13 20 20 H 1.48500 * 109.47098 * 29.99571 * 17 15 13 21 21 C 1.48555 * 111.00142 * 60.48492 * 8 7 6 22 22 C 1.46850 * 111.19819 * 298.25910 * 5 4 3 23 23 C 1.53034 * 109.52629 * 61.74043 * 22 5 4 24 24 H 1.09000 * 109.46683 * 60.00340 * 1 2 3 25 25 H 1.09002 * 109.46697 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47174 * 299.99919 * 1 2 3 27 27 H 1.09001 * 109.57257 * 120.15788 * 2 1 3 28 28 H 1.09000 * 109.50465 * 62.49836 * 3 2 1 29 29 H 1.09002 * 109.53378 * 302.39845 * 3 2 1 30 30 H 1.08998 * 109.46424 * 299.16611 * 4 3 2 31 31 H 1.08996 * 109.46042 * 179.18703 * 4 3 2 32 32 H 1.09002 * 109.46986 * 49.99553 * 6 5 4 33 33 H 1.09004 * 109.46745 * 290.00325 * 6 5 4 34 34 H 1.08997 * 109.46844 * 54.84730 * 7 6 5 35 35 H 1.09007 * 109.46870 * 294.85058 * 7 6 5 36 36 H 1.09000 * 110.41008 * 82.18388 * 9 8 7 37 37 H 1.08992 * 110.41567 * 319.73539 * 9 8 7 38 38 H 1.08999 * 110.32520 * 264.95820 * 10 9 8 39 39 H 1.08995 * 110.40502 * 142.79626 * 10 9 8 40 40 H 0.96997 * 120.00086 * 180.02562 * 16 15 13 41 41 H 1.09003 * 110.41517 * 40.26209 * 21 8 7 42 42 H 1.08993 * 110.41452 * 277.81373 * 21 8 7 43 43 H 1.08999 * 109.46368 * 181.75972 * 22 5 4 44 44 H 1.09000 * 109.45972 * 301.72460 * 22 5 4 45 45 H 1.08996 * 109.50764 * 180.88030 * 23 22 5 46 46 H 1.08999 * 109.53244 * 60.78144 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0417 1.4432 0.0000 4 6 3.5709 1.4371 -0.0615 5 7 4.0103 0.7429 -1.2787 6 6 5.4671 0.8378 -1.4420 7 6 5.9159 -0.0954 -2.5684 8 7 7.3522 0.0899 -2.8146 9 6 7.8454 -0.8700 -3.8356 10 6 9.3696 -0.9397 -3.5999 11 6 9.5674 -0.5180 -2.1293 12 1 10.1838 0.3792 -2.0724 13 6 10.2005 -1.6378 -1.3444 14 1 9.6735 -2.0782 -0.5108 15 6 11.4525 -2.1002 -1.6904 16 7 12.0052 -3.0771 -1.0051 17 14 12.3637 -1.3390 -3.1325 18 1 12.0212 -2.0728 -4.3773 19 1 13.8269 -1.4243 -2.8942 20 1 11.9671 0.0852 -3.2725 21 6 8.1461 -0.2290 -1.6002 22 6 3.5708 -0.6583 -1.2789 23 6 2.0418 -0.7148 -1.2537 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8952 -0.5160 0.8880 28 1 1.7162 1.9447 0.9113 29 1 1.6447 1.9706 -0.8674 30 1 3.9675 0.9221 0.8135 31 1 3.9378 2.4633 -0.0762 32 1 5.9566 0.5470 -0.5125 33 1 5.7388 1.8638 -1.6902 34 1 5.3587 0.1366 -3.4760 35 1 5.7271 -1.1296 -2.2803 36 1 7.6324 -0.5008 -4.8388 37 1 7.3925 -1.8501 -3.6862 38 1 9.8874 -0.2485 -4.2649 39 1 9.7320 -1.9559 -3.7545 40 1 12.8862 -3.4022 -1.2482 41 1 7.7402 -1.1088 -1.1008 42 1 8.1596 0.6227 -0.9203 43 1 3.9378 -1.1539 -2.1776 44 1 3.9675 -1.1634 -0.3982 45 1 1.7162 -1.7548 -1.2381 46 1 1.6442 -0.2223 -2.1411 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723469143.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:40 Heat of formation + Delta-G solvation = -24.640975 kcal Electronic energy + Delta-G solvation = -20957.923898 eV Core-core repulsion = 18073.703462 eV Total energy + Delta-G solvation = -2884.220436 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.54548 -39.56929 -36.23721 -34.92068 -33.08942 -31.81445 -30.51980 -29.53099 -27.59622 -26.06517 -24.47555 -23.43988 -22.43803 -21.77451 -20.92983 -20.47920 -18.70609 -17.44099 -16.89720 -16.55300 -16.04684 -15.86031 -15.54895 -15.24491 -15.15687 -14.84639 -14.69602 -14.47179 -13.99361 -13.63220 -13.38720 -13.26689 -13.04311 -12.78962 -12.71787 -12.52973 -12.32993 -12.16637 -12.09415 -11.97158 -11.85333 -11.65991 -11.51656 -11.44627 -11.16342 -11.07466 -10.99281 -10.75671 -9.43810 -9.31970 -8.31790 -6.36298 1.33758 1.37283 1.48498 2.33871 2.72606 3.03124 3.30147 3.77747 3.84984 3.88250 3.93414 3.95747 4.10874 4.25590 4.33200 4.35275 4.44086 4.45772 4.46792 4.54992 4.59355 4.72474 4.75029 4.80462 4.83026 4.86260 4.91945 4.95571 4.97272 5.02470 5.05375 5.14785 5.15780 5.22593 5.27750 5.28485 5.35961 5.53404 5.54728 5.61197 5.88232 6.01725 6.13385 6.17769 6.29994 6.69720 7.29487 8.84873 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.039905 B = 0.003580 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.490854 B = 7819.051205 C = 7970.505209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 C -0.104 4.104 4 C 0.052 3.948 5 N -0.536 5.536 6 C 0.067 3.933 7 C 0.051 3.949 8 N -0.513 5.513 9 C 0.048 3.952 10 C -0.134 4.134 11 C 0.006 3.994 12 H 0.032 0.968 13 C -0.518 4.518 14 H 0.028 0.972 15 C 0.013 3.987 16 N -0.951 5.951 17 Si 0.945 3.055 18 H -0.261 1.261 19 H -0.294 1.294 20 H -0.244 1.244 21 C 0.061 3.939 22 C 0.045 3.955 23 C -0.106 4.106 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.022 0.978 31 H 0.079 0.921 32 H 0.019 0.981 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.028 0.972 36 H 0.098 0.902 37 H 0.037 0.963 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.266 0.734 41 H 0.020 0.980 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.017 0.983 45 H 0.073 0.927 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.827 8.659 -2.571 23.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 C -0.142 4.142 4 C -0.076 4.076 5 N -0.261 5.261 6 C -0.061 4.061 7 C -0.077 4.077 8 N -0.238 5.238 9 C -0.080 4.080 10 C -0.172 4.172 11 C -0.013 4.013 12 H 0.050 0.950 13 C -0.556 4.556 14 H 0.046 0.954 15 C -0.184 4.184 16 N -0.592 5.592 17 Si 0.770 3.230 18 H -0.186 1.186 19 H -0.221 1.221 20 H -0.168 1.168 21 C -0.067 4.067 22 C -0.083 4.083 23 C -0.143 4.143 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.040 0.960 31 H 0.097 0.903 32 H 0.037 0.963 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.046 0.954 36 H 0.117 0.883 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.038 0.962 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.035 0.965 45 H 0.091 0.909 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.860 9.347 -3.119 23.978 hybrid contribution 1.317 -1.584 0.925 2.258 sum -20.543 7.763 -2.194 22.070 Atomic orbital electron populations 1.21762 0.93775 1.02029 1.02215 1.21206 0.96661 0.96029 0.97618 1.21615 0.93106 0.96698 1.02766 1.22170 0.97047 0.98923 0.89476 1.62059 1.11406 1.14407 1.38223 1.21973 0.87095 1.00791 0.96289 1.22339 0.88674 0.97033 0.99688 1.65394 1.03311 1.48102 1.06945 1.22988 0.94183 0.93961 0.96882 1.22696 0.96265 1.00348 0.97901 1.19839 0.93607 0.95256 0.92595 0.95006 1.21310 1.01983 1.17609 1.14715 0.95356 1.25895 0.98084 0.94872 0.99566 1.70058 1.17204 1.29121 1.42777 0.85842 0.76632 0.80865 0.79699 1.18583 1.22111 1.16793 1.22881 0.93559 0.97809 0.92419 1.22255 0.97039 0.88704 1.00295 1.21627 0.93105 1.00879 0.98736 0.92251 0.92435 0.92131 0.92374 0.90322 0.90956 0.95961 0.90260 0.96300 0.89749 0.88940 0.95431 0.88336 0.94481 0.91860 0.92946 0.92503 0.96179 0.91045 0.90510 0.96511 0.90883 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.20 71.98 0.66 -1.08 16 2 C -0.10 -1.54 2.79 -10.71 -0.03 -1.57 16 3 C -0.10 -1.68 5.38 30.65 0.16 -1.51 16 4 C 0.05 1.06 5.42 86.33 0.47 1.53 16 5 N -0.54 -12.56 4.81 -896.34 -4.31 -16.87 16 6 C 0.07 1.80 5.01 86.30 0.43 2.23 16 7 C 0.05 1.47 3.94 86.30 0.34 1.81 16 8 N -0.51 -17.69 5.44 -881.48 -4.80 -22.49 16 9 C 0.05 1.64 6.49 86.45 0.56 2.20 16 10 C -0.13 -5.55 4.62 31.49 0.15 -5.41 16 11 C 0.01 0.31 2.51 -10.64 -0.03 0.28 16 12 H 0.03 1.53 7.28 -2.39 -0.02 1.51 16 13 C -0.52 -29.94 8.95 25.60 0.23 -29.71 16 14 H 0.03 1.82 7.83 -2.91 -0.02 1.80 16 15 C 0.01 0.75 5.34 84.66 0.45 1.20 16 16 N -0.95 -60.01 13.96 21.45 0.30 -59.71 16 17 Si 0.95 44.66 24.63 68.60 1.69 46.35 16 18 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 19 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 20 H -0.24 -10.77 6.48 99.48 0.64 -10.13 16 21 C 0.06 2.50 4.91 86.45 0.42 2.93 16 22 C 0.05 1.01 4.86 86.32 0.42 1.43 16 23 C -0.11 -1.86 5.38 30.65 0.16 -1.70 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.08 1.53 8.12 -2.39 -0.02 1.52 16 32 H 0.02 0.57 7.16 -2.39 -0.02 0.55 16 33 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.09 2.41 8.14 -2.39 -0.02 2.40 16 35 H 0.03 0.84 6.39 -2.38 -0.02 0.82 16 36 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 37 H 0.04 1.28 7.91 -2.39 -0.02 1.26 16 38 H 0.06 2.42 7.48 -2.39 -0.02 2.41 16 39 H 0.05 2.36 6.46 -2.39 -0.02 2.34 16 40 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 41 H 0.02 0.89 7.53 -2.39 -0.02 0.87 16 42 H 0.07 2.78 7.79 -2.39 -0.02 2.77 16 43 H 0.08 1.76 5.93 -2.39 -0.01 1.75 16 44 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -64.02 338.37 -1.87 -65.88 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.84 Total: 14.21 kcal Atomic # 6 Polarization: -31.78 SS G_CDS: 4.41 Total: -27.38 kcal Atomic # 7 Polarization: -90.26 SS G_CDS: -8.81 Total: -99.07 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.69 Total: 46.35 kcal Total: -64.02 -1.87 -65.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723469143.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.244 kcal (2) G-P(sol) polarization free energy of solvation -64.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds