Wall clock time and date at job start Mon Mar 30 2020 04:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36933 * 119.99798 * 2 1 4 4 H 1.08004 * 120.00088 * 203.01314 * 3 2 1 5 5 C 1.38817 * 120.00219 * 23.01685 * 3 2 1 6 6 N 1.31617 * 119.99736 * 13.07667 * 5 3 2 7 7 Si 1.86802 * 120.00154 * 193.07958 * 5 3 2 8 8 H 1.48494 * 109.46926 * 59.99803 * 7 5 3 9 9 H 1.48503 * 109.46846 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46790 * 299.99885 * 7 5 3 11 11 C 1.46501 * 120.00019 * 180.02562 * 2 1 3 12 12 N 1.46498 * 109.47306 * 89.99771 * 11 2 1 13 13 C 1.46860 * 124.34270 * 269.97149 * 12 11 2 14 14 C 1.54479 * 105.42466 * 197.02325 * 13 12 11 15 15 H 1.09006 * 110.96544 * 216.44288 * 14 13 12 16 16 C 1.52994 * 110.96757 * 92.72016 * 14 13 12 17 17 C 1.54890 * 110.76000 * 69.75783 * 16 14 13 18 18 C 1.54264 * 104.19565 * 156.25400 * 17 16 14 19 19 C 1.53879 * 106.60213 * 336.39341 * 18 17 16 20 20 C 1.54272 * 106.59532 * 359.97438 * 19 18 17 21 21 C 1.54624 * 101.79850 * 334.57555 * 14 13 12 22 22 C 1.34420 * 124.34815 * 89.97785 * 12 11 2 23 23 O 1.21287 * 124.94413 * 359.54529 * 22 12 11 24 24 H 1.08998 * 109.47247 * 275.12093 * 1 2 3 25 25 H 1.08996 * 109.47232 * 35.12670 * 1 2 3 26 26 H 1.09005 * 109.46778 * 155.12183 * 1 2 3 27 27 H 0.97001 * 120.00365 * 180.02562 * 6 5 3 28 28 H 1.08998 * 109.47111 * 329.99509 * 11 2 1 29 29 H 1.09005 * 109.46763 * 210.00353 * 11 2 1 30 30 H 1.09005 * 110.25288 * 78.04286 * 13 12 11 31 31 H 1.08997 * 110.27870 * 316.01624 * 13 12 11 32 32 H 1.09002 * 110.81661 * 306.41784 * 16 14 13 33 33 H 1.08997 * 110.48246 * 37.57960 * 17 16 14 34 34 H 1.08995 * 110.48514 * 274.93315 * 17 16 14 35 35 H 1.08996 * 110.03580 * 217.10321 * 18 17 16 36 36 H 1.08999 * 110.03197 * 95.67208 * 18 17 16 37 37 H 1.09000 * 110.03581 * 119.28310 * 19 18 17 38 38 H 1.08995 * 110.02982 * 240.71625 * 19 18 17 39 39 H 1.09000 * 110.48078 * 142.28755 * 20 19 18 40 40 H 1.08993 * 110.48635 * 264.80050 * 20 19 18 41 41 H 1.09008 * 110.48128 * 143.49453 * 21 14 13 42 42 H 1.08992 * 110.49225 * 266.13851 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1652 1.2232 -0.3657 5 6 1.5385 2.3402 0.4700 6 7 0.4128 2.2598 1.1473 7 14 2.3136 4.0078 0.1413 8 1 2.4145 4.2264 -1.3240 9 1 1.4713 5.0724 0.7434 10 1 3.6706 4.0500 0.7427 11 6 2.1975 -1.2687 -0.0006 12 7 2.4417 -1.6911 -1.3819 13 6 1.5299 -2.5367 -2.1632 14 6 2.3719 -3.0662 -3.3451 15 1 1.7720 -3.1317 -4.2529 16 6 2.9988 -4.4204 -3.0075 17 6 1.9143 -5.5236 -2.9311 18 6 2.6856 -6.8318 -3.2020 19 6 3.9506 -6.4418 -3.9866 20 6 3.9034 -4.9103 -4.1657 21 6 3.4561 -1.9716 -3.4763 22 6 3.5290 -1.3545 -2.0970 23 8 4.4361 -0.6568 -1.6952 24 1 -0.3634 0.0917 1.0235 25 1 -0.3633 0.8405 -0.5913 26 1 -0.3633 -0.9324 -0.4324 27 1 -0.0146 3.0664 1.4755 28 1 1.6085 -2.0286 0.5130 29 1 3.1499 -1.1386 0.5134 30 1 0.6909 -1.9466 -2.5321 31 1 1.1698 -3.3665 -1.5549 32 1 3.5604 -4.3655 -2.0749 33 1 1.1535 -5.3641 -3.6951 34 1 1.4619 -5.5458 -1.9397 35 1 2.0729 -7.5106 -3.7950 36 1 2.9619 -7.3044 -2.2595 37 1 4.8407 -6.7252 -3.4249 38 1 3.9516 -6.9314 -4.9605 39 1 4.9028 -4.4847 -4.0748 40 1 3.4661 -4.6523 -5.1301 41 1 4.4146 -2.4147 -3.7470 42 1 3.1580 -1.2256 -4.2128 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842595963.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:04 Heat of formation + Delta-G solvation = -26.143771 kcal Electronic energy + Delta-G solvation = -21150.641379 eV Core-core repulsion = 18130.522682 eV Total energy + Delta-G solvation = -3020.118697 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.13537 -38.01031 -35.76890 -35.11537 -32.25960 -30.49854 -29.08197 -28.19560 -26.72731 -25.79332 -25.08906 -21.77991 -21.35287 -20.36828 -19.85167 -18.57653 -16.75443 -16.24574 -16.06777 -15.72786 -14.99247 -14.61472 -14.24221 -13.66996 -13.60195 -13.39137 -13.24346 -12.95389 -12.76170 -12.31202 -11.97636 -11.72722 -11.56882 -11.40381 -11.24494 -11.16434 -10.84811 -10.69375 -10.65058 -10.57425 -10.48848 -10.45186 -10.40470 -9.96025 -9.86489 -9.07431 -8.57279 -8.02633 -6.89199 -5.72506 -3.19547 3.32803 3.44699 3.47952 3.53504 3.86113 4.31881 4.44417 4.54811 4.56418 4.79963 4.90765 5.06448 5.26034 5.30494 5.40155 5.46305 5.48694 5.54275 5.60188 5.62829 5.71449 5.79093 5.79926 5.85020 5.92428 5.93231 5.94904 6.05924 6.11497 6.22088 6.24883 6.38687 6.52910 6.65339 7.21790 7.43166 7.67487 7.93721 7.95710 8.40265 8.96522 9.25230 9.84470 10.30307 11.32761 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.036051 B = 0.004668 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.490104 B = 5997.458991 C = 6474.549198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.586 5.586 3 C -0.257 4.257 4 H 0.078 0.922 5 C 0.005 3.995 6 N -0.909 5.909 7 Si 0.907 3.093 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.281 1.281 11 C 0.360 3.640 12 N -0.619 5.619 13 C 0.106 3.894 14 C -0.092 4.092 15 H 0.089 0.911 16 C -0.082 4.082 17 C -0.119 4.119 18 C -0.125 4.125 19 C -0.125 4.125 20 C -0.120 4.120 21 C -0.155 4.155 22 C 0.516 3.484 23 O -0.538 6.538 24 H 0.036 0.964 25 H 0.040 0.960 26 H -0.003 1.003 27 H 0.253 0.747 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.398 -17.789 -10.429 20.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.308 5.308 3 C -0.387 4.387 4 H 0.095 0.905 5 C -0.194 4.194 6 N -0.554 5.554 7 Si 0.737 3.263 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.207 1.207 11 C 0.152 3.848 12 N -0.359 5.359 13 C -0.019 4.019 14 C -0.111 4.111 15 H 0.107 0.893 16 C -0.101 4.101 17 C -0.157 4.157 18 C -0.162 4.162 19 C -0.163 4.163 20 C -0.157 4.157 21 C -0.195 4.195 22 C 0.302 3.698 23 O -0.415 6.415 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.016 0.984 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.110 0.890 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.711 -17.220 -9.969 19.971 hybrid contribution 0.134 1.000 -0.287 1.049 sum 1.844 -16.220 -10.256 19.279 Atomic orbital electron populations 1.20877 0.82664 0.95413 0.99720 1.44559 1.02221 1.01544 1.82505 1.19383 0.98551 0.85307 1.35449 0.90470 1.25023 0.97697 0.98655 0.97977 1.70067 1.19568 1.27404 1.38370 0.86291 0.78575 0.83438 0.78037 1.21098 1.21674 1.20694 1.20736 0.96703 0.87316 0.79999 1.50462 1.19977 1.49629 1.15849 1.22054 0.93288 0.94049 0.92483 1.22172 0.96483 0.93708 0.98690 0.89278 1.22116 0.96182 0.92878 0.98914 1.22414 0.97585 0.93948 1.01726 1.22123 0.96521 0.97618 0.99977 1.22127 0.98012 0.96169 0.99955 1.22421 0.99838 0.94933 0.98551 1.22485 1.00704 0.98782 0.97569 1.20727 0.82330 0.79793 0.86973 1.90684 1.37177 1.38354 1.75284 0.94523 0.94079 0.98412 0.93723 0.92238 0.90640 0.91895 0.91149 0.90306 0.91430 0.91546 0.92119 0.92045 0.92061 0.92140 0.91668 0.91450 0.88954 0.88646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.85 8.98 59.85 0.54 4.39 16 2 N -0.59 -15.07 3.16 -184.85 -0.58 -15.66 16 3 C -0.26 -7.48 9.65 -15.06 -0.15 -7.63 16 4 H 0.08 2.36 7.48 -52.48 -0.39 1.97 16 5 C 0.00 0.13 5.10 -17.43 -0.09 0.04 16 6 N -0.91 -26.94 10.71 55.49 0.59 -26.34 16 7 Si 0.91 23.15 29.57 -169.99 -5.03 18.13 16 8 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 9 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 10 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 11 C 0.36 7.69 6.43 -63.75 -0.41 7.28 16 12 N -0.62 -11.50 3.17 -176.04 -0.56 -12.06 16 13 C 0.11 1.47 6.81 -3.07 -0.02 1.45 16 14 C -0.09 -1.03 2.61 -88.99 -0.23 -1.26 16 15 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 16 C -0.08 -0.82 2.40 -88.62 -0.21 -1.03 16 17 C -0.12 -1.02 5.72 -25.07 -0.14 -1.16 16 18 C -0.12 -0.98 6.80 -25.61 -0.17 -1.16 16 19 C -0.12 -0.99 6.80 -25.61 -0.17 -1.17 16 20 C -0.12 -1.05 5.54 -25.06 -0.14 -1.19 16 21 C -0.15 -2.16 6.28 -26.75 -0.17 -2.33 16 22 C 0.52 10.16 8.02 -10.86 -0.09 10.07 16 23 O -0.54 -13.15 17.22 5.55 0.10 -13.06 16 24 H 0.04 0.96 7.34 -51.93 -0.38 0.58 16 25 H 0.04 1.09 7.34 -51.93 -0.38 0.71 16 26 H 0.00 -0.06 8.03 -51.93 -0.42 -0.47 16 27 H 0.25 7.27 8.31 -40.82 -0.34 6.94 16 28 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 29 H 0.08 1.74 7.83 -51.93 -0.41 1.33 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.86 7.07 -51.93 -0.37 0.49 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.54 8.04 -51.93 -0.42 0.12 16 34 H 0.07 0.58 7.73 -51.93 -0.40 0.18 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.60 7.58 -51.93 -0.39 0.20 16 40 H 0.07 0.55 8.05 -51.93 -0.42 0.13 16 41 H 0.09 1.17 6.78 -51.92 -0.35 0.82 16 42 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 331.12 15.07 4.99 4.99 Total: -1.00 -32.91 331.12 -9.21 -42.12 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -7.26 Total: -4.42 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -1.46 Total: 6.30 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.55 Total: -54.06 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.10 Total: -13.06 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.03 Total: 18.13 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.91 -9.21 -42.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842595963.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.976 kcal (2) G-P(sol) polarization free energy of solvation -32.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds