Wall clock time and date at job start Mon Mar 30 2020 04:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36933 * 119.99798 * 2 1 4 4 H 1.08004 * 120.00088 * 203.01314 * 3 2 1 5 5 C 1.38817 * 120.00219 * 23.01685 * 3 2 1 6 6 N 1.31617 * 119.99736 * 13.07667 * 5 3 2 7 7 Si 1.86802 * 120.00154 * 193.07958 * 5 3 2 8 8 H 1.48494 * 109.46926 * 59.99803 * 7 5 3 9 9 H 1.48503 * 109.46846 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46790 * 299.99885 * 7 5 3 11 11 C 1.46501 * 120.00019 * 180.02562 * 2 1 3 12 12 N 1.46498 * 109.47306 * 89.99771 * 11 2 1 13 13 C 1.46860 * 124.34270 * 269.97149 * 12 11 2 14 14 C 1.54479 * 105.42466 * 197.02325 * 13 12 11 15 15 H 1.09006 * 110.96544 * 216.44288 * 14 13 12 16 16 C 1.52994 * 110.96757 * 92.72016 * 14 13 12 17 17 C 1.54890 * 110.76000 * 69.75783 * 16 14 13 18 18 C 1.54264 * 104.19565 * 156.25400 * 17 16 14 19 19 C 1.53879 * 106.60213 * 336.39341 * 18 17 16 20 20 C 1.54272 * 106.59532 * 359.97438 * 19 18 17 21 21 C 1.54624 * 101.79850 * 334.57555 * 14 13 12 22 22 C 1.34420 * 124.34815 * 89.97785 * 12 11 2 23 23 O 1.21287 * 124.94413 * 359.54529 * 22 12 11 24 24 H 1.08998 * 109.47247 * 275.12093 * 1 2 3 25 25 H 1.08996 * 109.47232 * 35.12670 * 1 2 3 26 26 H 1.09005 * 109.46778 * 155.12183 * 1 2 3 27 27 H 0.97001 * 120.00365 * 180.02562 * 6 5 3 28 28 H 1.08998 * 109.47111 * 329.99509 * 11 2 1 29 29 H 1.09005 * 109.46763 * 210.00353 * 11 2 1 30 30 H 1.09005 * 110.25288 * 78.04286 * 13 12 11 31 31 H 1.08997 * 110.27870 * 316.01624 * 13 12 11 32 32 H 1.09002 * 110.81661 * 306.41784 * 16 14 13 33 33 H 1.08997 * 110.48246 * 37.57960 * 17 16 14 34 34 H 1.08995 * 110.48514 * 274.93315 * 17 16 14 35 35 H 1.08996 * 110.03580 * 217.10321 * 18 17 16 36 36 H 1.08999 * 110.03197 * 95.67208 * 18 17 16 37 37 H 1.09000 * 110.03581 * 119.28310 * 19 18 17 38 38 H 1.08995 * 110.02982 * 240.71625 * 19 18 17 39 39 H 1.09000 * 110.48078 * 142.28755 * 20 19 18 40 40 H 1.08993 * 110.48635 * 264.80050 * 20 19 18 41 41 H 1.09008 * 110.48128 * 143.49453 * 21 14 13 42 42 H 1.08992 * 110.49225 * 266.13851 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1652 1.2232 -0.3657 5 6 1.5385 2.3402 0.4700 6 7 0.4128 2.2598 1.1473 7 14 2.3136 4.0078 0.1413 8 1 2.4145 4.2264 -1.3240 9 1 1.4713 5.0724 0.7434 10 1 3.6706 4.0500 0.7427 11 6 2.1975 -1.2687 -0.0006 12 7 2.4417 -1.6911 -1.3819 13 6 1.5299 -2.5367 -2.1632 14 6 2.3719 -3.0662 -3.3451 15 1 1.7720 -3.1317 -4.2529 16 6 2.9988 -4.4204 -3.0075 17 6 1.9143 -5.5236 -2.9311 18 6 2.6856 -6.8318 -3.2020 19 6 3.9506 -6.4418 -3.9866 20 6 3.9034 -4.9103 -4.1657 21 6 3.4561 -1.9716 -3.4763 22 6 3.5290 -1.3545 -2.0970 23 8 4.4361 -0.6568 -1.6952 24 1 -0.3634 0.0917 1.0235 25 1 -0.3633 0.8405 -0.5913 26 1 -0.3633 -0.9324 -0.4324 27 1 -0.0146 3.0664 1.4755 28 1 1.6085 -2.0286 0.5130 29 1 3.1499 -1.1386 0.5134 30 1 0.6909 -1.9466 -2.5321 31 1 1.1698 -3.3665 -1.5549 32 1 3.5604 -4.3655 -2.0749 33 1 1.1535 -5.3641 -3.6951 34 1 1.4619 -5.5458 -1.9397 35 1 2.0729 -7.5106 -3.7950 36 1 2.9619 -7.3044 -2.2595 37 1 4.8407 -6.7252 -3.4249 38 1 3.9516 -6.9314 -4.9605 39 1 4.9028 -4.4847 -4.0748 40 1 3.4661 -4.6523 -5.1301 41 1 4.4146 -2.4147 -3.7470 42 1 3.1580 -1.2256 -4.2128 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842595963.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:04 Heat of formation + Delta-G solvation = -45.570913 kcal Electronic energy + Delta-G solvation = -21151.483803 eV Core-core repulsion = 18130.522682 eV Total energy + Delta-G solvation = -3020.961121 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.42949 -39.00389 -37.58079 -36.64966 -33.91019 -32.25724 -29.86719 -29.18636 -28.18898 -27.60812 -26.70192 -23.33336 -22.70291 -21.10872 -20.71437 -20.03830 -18.82983 -17.56201 -17.43725 -16.81538 -16.66263 -15.95157 -15.64855 -15.30888 -15.01564 -14.69548 -14.45921 -14.26851 -13.88106 -13.79237 -13.47180 -13.24228 -12.90089 -12.74935 -12.67955 -12.48602 -12.37845 -12.08477 -12.04876 -11.95775 -11.80660 -11.43740 -11.38148 -11.29375 -11.14956 -10.79503 -10.60537 -9.59939 -8.97996 -7.91762 -5.41665 1.38681 1.40123 1.48589 1.77998 2.36942 2.48325 3.25773 3.44176 3.55284 3.67452 3.70902 3.90678 4.05863 4.22535 4.29439 4.35399 4.61221 4.62785 4.67968 4.72382 4.76514 4.79546 4.81806 4.85076 4.91117 4.98008 5.04115 5.05589 5.20995 5.24857 5.27266 5.38285 5.45037 5.59742 5.61495 5.62933 5.66561 5.86910 6.24586 6.47080 7.09001 7.40796 7.76159 8.16226 9.10239 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.036051 B = 0.004668 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.490104 B = 5997.458991 C = 6474.549198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.606 5.606 3 C -0.265 4.265 4 H 0.052 0.948 5 C -0.041 4.041 6 N -0.929 5.929 7 Si 0.961 3.039 8 H -0.284 1.284 9 H -0.282 1.282 10 H -0.282 1.282 11 C 0.365 3.635 12 N -0.621 5.621 13 C 0.102 3.898 14 C -0.073 4.073 15 H 0.123 0.877 16 C -0.082 4.082 17 C -0.116 4.116 18 C -0.125 4.125 19 C -0.125 4.125 20 C -0.119 4.119 21 C -0.143 4.143 22 C 0.497 3.503 23 O -0.598 6.598 24 H 0.014 0.986 25 H 0.011 0.989 26 H 0.040 0.960 27 H 0.252 0.748 28 H 0.093 0.907 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.503 -19.700 -12.356 23.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.330 5.330 3 C -0.396 4.396 4 H 0.070 0.930 5 C -0.237 4.237 6 N -0.575 5.575 7 Si 0.789 3.211 8 H -0.211 1.211 9 H -0.207 1.207 10 H -0.208 1.208 11 C 0.157 3.843 12 N -0.359 5.359 13 C -0.021 4.021 14 C -0.092 4.092 15 H 0.141 0.859 16 C -0.101 4.101 17 C -0.153 4.153 18 C -0.162 4.162 19 C -0.163 4.163 20 C -0.156 4.156 21 C -0.183 4.183 22 C 0.286 3.714 23 O -0.480 6.480 24 H 0.032 0.968 25 H 0.030 0.970 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.110 0.890 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.125 0.875 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.800 -19.199 -11.932 22.619 hybrid contribution 0.454 1.480 0.305 1.577 sum 1.254 -17.720 -11.628 21.231 Atomic orbital electron populations 1.20612 0.81905 0.96253 0.98102 1.44697 1.02774 1.01861 1.83680 1.19323 0.97893 0.87217 1.35144 0.93046 1.25643 0.98450 1.01354 0.98211 1.70181 1.20373 1.27849 1.39109 0.85447 0.77782 0.80146 0.77684 1.21090 1.20691 1.20804 1.20668 0.95508 0.86743 0.81346 1.50098 1.20787 1.49735 1.15258 1.22344 0.92641 0.93866 0.93265 1.22199 0.95178 0.93045 0.98752 0.85939 1.22068 0.96805 0.92728 0.98454 1.22411 0.97332 0.93440 1.02160 1.22129 0.96528 0.97540 1.00036 1.22132 0.97932 0.95648 1.00559 1.22423 0.99225 0.95419 0.98555 1.22457 1.02754 0.99583 0.93544 1.21763 0.81504 0.79029 0.89138 1.90643 1.39314 1.41048 1.76949 0.96800 0.96983 0.94192 0.93922 0.88957 0.93534 0.91876 0.88850 0.92574 0.90022 0.91733 0.90936 0.92430 0.92578 0.90993 0.92438 0.90074 0.87520 0.87649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.52 8.98 127.77 1.15 9.67 16 2 N -0.61 -31.49 3.16 -738.75 -2.34 -33.83 16 3 C -0.27 -15.85 9.65 84.04 0.81 -15.04 16 4 H 0.05 3.30 7.48 -2.91 -0.02 3.27 16 5 C -0.04 -2.41 5.10 84.86 0.43 -1.97 16 6 N -0.93 -55.86 10.71 21.65 0.23 -55.62 16 7 Si 0.96 48.42 29.57 68.60 2.03 50.45 16 8 H -0.28 -14.21 7.11 99.48 0.71 -13.50 16 9 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 10 H -0.28 -14.13 7.11 99.48 0.71 -13.42 16 11 C 0.37 15.63 6.43 170.96 1.10 16.73 16 12 N -0.62 -22.61 3.17 -829.47 -2.63 -25.24 16 13 C 0.10 2.52 6.81 86.81 0.59 3.11 16 14 C -0.07 -1.38 2.61 -9.74 -0.03 -1.41 16 15 H 0.12 1.65 8.14 -2.38 -0.02 1.63 16 16 C -0.08 -1.39 2.40 -9.50 -0.02 -1.41 16 17 C -0.12 -1.56 5.72 31.67 0.18 -1.38 16 18 C -0.12 -1.58 6.80 31.32 0.21 -1.37 16 19 C -0.13 -1.64 6.80 31.32 0.21 -1.42 16 20 C -0.12 -1.72 5.54 31.68 0.18 -1.55 16 21 C -0.14 -3.71 6.28 30.58 0.19 -3.52 16 22 C 0.50 19.63 8.02 87.90 0.71 20.34 16 23 O -0.60 -30.42 17.22 -3.05 -0.05 -30.47 16 24 H 0.01 0.72 7.34 -2.39 -0.02 0.70 16 25 H 0.01 0.61 7.34 -2.39 -0.02 0.60 16 26 H 0.04 1.56 8.03 -2.38 -0.02 1.54 16 27 H 0.25 14.63 8.31 -92.71 -0.77 13.85 16 28 H 0.09 3.30 8.07 -2.39 -0.02 3.28 16 29 H 0.05 2.23 7.83 -2.38 -0.02 2.21 16 30 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.09 1.93 7.07 -2.39 -0.02 1.91 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 0.91 8.04 -2.39 -0.02 0.89 16 34 H 0.06 0.90 7.73 -2.39 -0.02 0.89 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.06 0.93 7.58 -2.39 -0.02 0.91 16 40 H 0.08 0.98 8.05 -2.39 -0.02 0.96 16 41 H 0.11 2.49 6.78 -2.38 -0.02 2.47 16 42 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -74.19 331.12 3.93 -70.26 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: 0.97 Total: 3.67 kcal Atomic # 6 Polarization: 15.06 SS G_CDS: 5.71 Total: 20.78 kcal Atomic # 7 Polarization: -109.96 SS G_CDS: -4.74 Total: -114.69 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.05 Total: -30.47 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 2.03 Total: 50.45 kcal Total: -74.19 3.93 -70.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842595963.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.692 kcal (2) G-P(sol) polarization free energy of solvation -74.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds