Wall clock time and date at job start Mon Mar 30 2020 04:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 120.00053 * 2 1 4 4 H 1.07993 * 119.99963 * 159.49133 * 3 2 1 5 5 C 1.38815 * 119.99780 * 339.21461 * 3 2 1 6 6 N 1.31617 * 119.99841 * 348.21437 * 5 3 2 7 7 Si 1.86794 * 119.99777 * 168.21632 * 5 3 2 8 8 H 1.48502 * 109.46932 * 90.00280 * 7 5 3 9 9 H 1.48498 * 109.47237 * 209.99958 * 7 5 3 10 10 H 1.48503 * 109.47305 * 330.00069 * 7 5 3 11 11 C 1.46500 * 119.99807 * 179.97438 * 2 1 3 12 12 N 1.46499 * 109.46902 * 269.99891 * 11 2 1 13 13 C 1.46758 * 124.34983 * 90.00505 * 12 11 2 14 14 C 1.54477 * 105.47756 * 197.01492 * 13 12 11 15 15 H 1.08996 * 110.97394 * 92.70027 * 14 13 12 16 16 C 1.52998 * 110.97127 * 216.46618 * 14 13 12 17 17 C 1.54259 * 110.03068 * 297.16179 * 16 14 13 18 18 C 1.54896 * 104.19876 * 217.10691 * 17 16 14 19 19 C 1.54890 * 102.74675 * 37.94349 * 18 17 16 20 20 C 1.53877 * 110.03308 * 179.97438 * 16 14 13 21 21 C 1.54635 * 101.76287 * 334.58013 * 14 13 12 22 22 C 1.34423 * 124.34895 * 269.70129 * 12 11 2 23 23 O 1.21274 * 124.94237 * 359.57504 * 22 12 11 24 24 H 1.09000 * 109.47351 * 84.88482 * 1 2 3 25 25 H 1.09002 * 109.47038 * 204.88119 * 1 2 3 26 26 H 1.08996 * 109.47725 * 324.88493 * 1 2 3 27 27 H 0.97001 * 119.99966 * 179.97438 * 6 5 3 28 28 H 1.08996 * 109.47158 * 30.00330 * 11 2 1 29 29 H 1.09003 * 109.47050 * 150.00262 * 11 2 1 30 30 H 1.09003 * 110.24498 * 316.01487 * 13 12 11 31 31 H 1.09001 * 110.25052 * 77.92650 * 13 12 11 32 32 H 1.08996 * 110.01986 * 58.61086 * 16 14 13 33 33 H 1.09003 * 110.49071 * 335.78539 * 17 16 14 34 34 H 1.09001 * 110.48829 * 98.43235 * 17 16 14 35 35 H 1.09008 * 110.75184 * 279.63206 * 18 17 16 36 36 H 1.08996 * 110.75914 * 156.25712 * 18 17 16 37 37 H 1.09001 * 110.48591 * 203.38202 * 19 18 17 38 38 H 1.08993 * 110.48262 * 80.73484 * 19 18 17 39 39 H 1.09001 * 110.03335 * 238.57215 * 20 16 14 40 40 H 1.09004 * 110.02930 * 0.02562 * 20 16 14 41 41 H 1.09005 * 110.48259 * 143.47140 * 21 14 13 42 42 H 1.08991 * 110.48997 * 265.98476 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1783 1.2155 0.3277 5 6 1.5233 2.3489 -0.4266 6 7 0.3631 2.2829 -1.0445 7 14 2.3272 4.0076 -0.1238 8 1 3.2010 4.3516 -1.2743 9 1 1.2769 5.0464 0.0280 10 1 3.1429 3.9436 1.1155 11 6 2.1974 -1.2688 0.0006 12 7 2.4416 -1.6910 1.3820 13 6 1.5303 -2.5355 2.1631 14 6 1.9604 -2.3541 3.6356 15 1 1.3899 -1.5577 4.1134 16 6 1.8224 -3.6653 4.4119 17 6 0.3442 -4.1048 4.4482 18 6 0.1636 -4.7142 5.8607 19 6 1.0261 -3.7824 6.7478 20 6 2.2566 -3.4605 5.8739 21 6 3.4466 -1.9552 3.4831 22 6 3.5318 -1.3595 2.0950 23 8 4.4490 -0.6796 1.6859 24 1 -0.3634 0.0916 -1.0236 25 1 -0.3633 -0.9323 0.4324 26 1 -0.3634 0.8406 0.5911 27 1 -0.0748 3.0956 -1.3423 28 1 1.6084 -2.0286 -0.5130 29 1 3.1499 -1.1387 -0.5133 30 1 0.5004 -2.2051 2.0275 31 1 1.6335 -3.5787 1.8644 32 1 2.4319 -4.4401 3.9470 33 1 -0.3128 -3.2450 4.3168 34 1 0.1504 -4.8550 3.6815 35 1 0.5419 -5.7361 5.8917 36 1 -0.8822 -4.6788 6.1658 37 1 1.3299 -4.2973 7.6592 38 1 0.4792 -2.8707 6.9877 39 1 3.0758 -4.1366 6.1184 40 1 2.5651 -2.4268 6.0304 41 1 3.7225 -1.2166 4.2358 42 1 4.0872 -2.8337 3.5592 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842595964.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:06 Heat of formation + Delta-G solvation = -25.243242 kcal Electronic energy + Delta-G solvation = -21135.570965 eV Core-core repulsion = 18115.491319 eV Total energy + Delta-G solvation = -3020.079647 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.08276 -38.12140 -35.78735 -35.08639 -32.29357 -30.54099 -29.06425 -28.20149 -26.69255 -25.76023 -25.00622 -21.63362 -21.36330 -20.75281 -19.59507 -18.60492 -16.82261 -16.38455 -15.88586 -15.64998 -15.04102 -14.71696 -14.23843 -13.57200 -13.47000 -13.45263 -13.29361 -12.96112 -12.85844 -12.43392 -11.99072 -11.75922 -11.25086 -11.23626 -11.17714 -11.05724 -10.91001 -10.81914 -10.77769 -10.71107 -10.48635 -10.41883 -10.36144 -9.95762 -9.85477 -9.06701 -8.57897 -8.04946 -6.92355 -5.72580 -3.18065 3.29232 3.42359 3.48295 3.55292 3.86503 4.36825 4.47358 4.52343 4.55912 4.85748 4.88231 5.00398 5.31171 5.34791 5.47257 5.48813 5.49484 5.54961 5.57907 5.61722 5.68406 5.77443 5.80209 5.82039 5.87307 5.96437 5.97113 6.06329 6.18184 6.20391 6.23475 6.41335 6.51943 6.67225 7.23234 7.44720 7.68438 7.92917 7.94692 8.38391 8.95075 9.24965 9.84137 10.28847 11.32639 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.025644 B = 0.004876 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.597180 B = 5740.845773 C = 5963.611443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.587 5.587 3 C -0.254 4.254 4 H 0.078 0.922 5 C 0.003 3.997 6 N -0.911 5.911 7 Si 0.906 3.094 8 H -0.286 1.286 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.359 3.641 12 N -0.621 5.621 13 C 0.107 3.893 14 C -0.092 4.092 15 H 0.087 0.913 16 C -0.079 4.079 17 C -0.121 4.121 18 C -0.125 4.125 19 C -0.125 4.125 20 C -0.121 4.121 21 C -0.152 4.152 22 C 0.515 3.485 23 O -0.538 6.538 24 H 0.035 0.965 25 H -0.005 1.005 26 H 0.045 0.955 27 H 0.252 0.748 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.179 -15.455 12.929 20.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.309 5.309 3 C -0.384 4.384 4 H 0.096 0.904 5 C -0.195 4.195 6 N -0.557 5.557 7 Si 0.736 3.264 8 H -0.213 1.213 9 H -0.216 1.216 10 H -0.204 1.204 11 C 0.151 3.849 12 N -0.361 5.361 13 C -0.018 4.018 14 C -0.111 4.111 15 H 0.105 0.895 16 C -0.097 4.097 17 C -0.159 4.159 18 C -0.163 4.163 19 C -0.163 4.163 20 C -0.159 4.159 21 C -0.193 4.193 22 C 0.301 3.699 23 O -0.415 6.415 24 H 0.053 0.947 25 H 0.014 0.986 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.109 0.891 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.855 -14.880 12.475 19.436 hybrid contribution 0.183 1.001 0.232 1.043 sum -0.672 -13.879 12.707 18.829 Atomic orbital electron populations 1.20899 0.82486 0.95400 0.99692 1.44591 1.02325 1.01520 1.82458 1.19433 0.97171 0.84948 1.36839 0.90392 1.24989 0.97402 0.98558 0.98550 1.70088 1.17204 1.26904 1.41480 0.86220 0.78274 0.83571 0.78330 1.21283 1.21649 1.20437 1.20741 0.96726 0.87285 0.80101 1.50505 1.20048 1.49457 1.16054 1.22038 0.95159 0.94541 0.90049 1.22264 0.95721 0.97742 0.95378 0.89464 1.21777 0.96687 0.96004 0.95278 1.22451 0.96029 1.00593 0.96825 1.22494 0.99612 0.98822 0.95367 1.22373 0.96539 0.99469 0.97914 1.22226 0.97694 1.01883 0.94088 1.22462 0.97325 1.02294 0.97196 1.20769 0.82426 0.79440 0.87249 1.90679 1.36562 1.38738 1.75508 0.94710 0.98602 0.93626 0.93792 0.92157 0.90615 0.91078 0.92171 0.90793 0.91131 0.91596 0.91746 0.91810 0.92066 0.91678 0.91940 0.91402 0.89088 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.90 8.96 59.85 0.54 4.43 16 2 N -0.59 -15.07 3.17 -184.86 -0.59 -15.65 16 3 C -0.25 -7.38 9.68 -15.06 -0.15 -7.52 16 4 H 0.08 2.38 7.58 -52.49 -0.40 1.98 16 5 C 0.00 0.08 5.13 -17.43 -0.09 -0.01 16 6 N -0.91 -26.94 10.51 55.49 0.58 -26.36 16 7 Si 0.91 23.12 29.57 -169.99 -5.03 18.09 16 8 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 9 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 10 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 11 C 0.36 7.68 6.44 -63.75 -0.41 7.27 16 12 N -0.62 -11.65 3.17 -176.12 -0.56 -12.21 16 13 C 0.11 1.50 6.39 -3.13 -0.02 1.48 16 14 C -0.09 -1.12 2.31 -88.99 -0.21 -1.32 16 15 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 16 C -0.08 -0.73 2.26 -89.51 -0.20 -0.93 16 17 C -0.12 -1.05 5.85 -25.07 -0.15 -1.20 16 18 C -0.13 -0.97 6.91 -24.73 -0.17 -1.14 16 19 C -0.13 -1.00 6.83 -25.04 -0.17 -1.17 16 20 C -0.12 -1.05 6.17 -25.58 -0.16 -1.21 16 21 C -0.15 -2.15 5.85 -26.73 -0.16 -2.30 16 22 C 0.52 10.23 8.02 -10.85 -0.09 10.14 16 23 O -0.54 -13.19 17.31 5.56 0.10 -13.10 16 24 H 0.03 0.91 7.40 -51.93 -0.38 0.52 16 25 H 0.00 -0.09 7.34 -51.93 -0.38 -0.48 16 26 H 0.04 1.22 7.15 -51.93 -0.37 0.84 16 27 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.06 1.12 8.07 -51.93 -0.42 0.71 16 29 H 0.08 1.74 7.81 -51.93 -0.41 1.33 16 30 H 0.07 1.04 7.45 -51.93 -0.39 0.65 16 31 H 0.06 0.72 7.89 -51.93 -0.41 0.31 16 32 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 33 H 0.07 0.66 7.85 -51.93 -0.41 0.25 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.63 7.44 -51.93 -0.39 0.24 16 41 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.09 1.13 7.87 -51.93 -0.41 0.72 16 LS Contribution 331.29 15.07 4.99 4.99 Total: -1.00 -32.85 331.29 -9.22 -42.07 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -7.30 Total: -4.36 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -1.43 Total: 6.52 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.56 Total: -54.22 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.10 Total: -13.10 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.03 Total: 18.09 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.85 -9.22 -42.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842595964.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.826 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds