Wall clock time and date at job start Mon Mar 30 2020 04:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 120.00053 * 2 1 4 4 H 1.07993 * 119.99963 * 159.49133 * 3 2 1 5 5 C 1.38815 * 119.99780 * 339.21461 * 3 2 1 6 6 N 1.31617 * 119.99841 * 348.21437 * 5 3 2 7 7 Si 1.86794 * 119.99777 * 168.21632 * 5 3 2 8 8 H 1.48502 * 109.46932 * 90.00280 * 7 5 3 9 9 H 1.48498 * 109.47237 * 209.99958 * 7 5 3 10 10 H 1.48503 * 109.47305 * 330.00069 * 7 5 3 11 11 C 1.46500 * 119.99807 * 179.97438 * 2 1 3 12 12 N 1.46499 * 109.46902 * 269.99891 * 11 2 1 13 13 C 1.46758 * 124.34983 * 90.00505 * 12 11 2 14 14 C 1.54477 * 105.47756 * 197.01492 * 13 12 11 15 15 H 1.08996 * 110.97394 * 92.70027 * 14 13 12 16 16 C 1.52998 * 110.97127 * 216.46618 * 14 13 12 17 17 C 1.54259 * 110.03068 * 297.16179 * 16 14 13 18 18 C 1.54896 * 104.19876 * 217.10691 * 17 16 14 19 19 C 1.54890 * 102.74675 * 37.94349 * 18 17 16 20 20 C 1.53877 * 110.03308 * 179.97438 * 16 14 13 21 21 C 1.54635 * 101.76287 * 334.58013 * 14 13 12 22 22 C 1.34423 * 124.34895 * 269.70129 * 12 11 2 23 23 O 1.21274 * 124.94237 * 359.57504 * 22 12 11 24 24 H 1.09000 * 109.47351 * 84.88482 * 1 2 3 25 25 H 1.09002 * 109.47038 * 204.88119 * 1 2 3 26 26 H 1.08996 * 109.47725 * 324.88493 * 1 2 3 27 27 H 0.97001 * 119.99966 * 179.97438 * 6 5 3 28 28 H 1.08996 * 109.47158 * 30.00330 * 11 2 1 29 29 H 1.09003 * 109.47050 * 150.00262 * 11 2 1 30 30 H 1.09003 * 110.24498 * 316.01487 * 13 12 11 31 31 H 1.09001 * 110.25052 * 77.92650 * 13 12 11 32 32 H 1.08996 * 110.01986 * 58.61086 * 16 14 13 33 33 H 1.09003 * 110.49071 * 335.78539 * 17 16 14 34 34 H 1.09001 * 110.48829 * 98.43235 * 17 16 14 35 35 H 1.09008 * 110.75184 * 279.63206 * 18 17 16 36 36 H 1.08996 * 110.75914 * 156.25712 * 18 17 16 37 37 H 1.09001 * 110.48591 * 203.38202 * 19 18 17 38 38 H 1.08993 * 110.48262 * 80.73484 * 19 18 17 39 39 H 1.09001 * 110.03335 * 238.57215 * 20 16 14 40 40 H 1.09004 * 110.02930 * 0.02562 * 20 16 14 41 41 H 1.09005 * 110.48259 * 143.47140 * 21 14 13 42 42 H 1.08991 * 110.48997 * 265.98476 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1783 1.2155 0.3277 5 6 1.5233 2.3489 -0.4266 6 7 0.3631 2.2829 -1.0445 7 14 2.3272 4.0076 -0.1238 8 1 3.2010 4.3516 -1.2743 9 1 1.2769 5.0464 0.0280 10 1 3.1429 3.9436 1.1155 11 6 2.1974 -1.2688 0.0006 12 7 2.4416 -1.6910 1.3820 13 6 1.5303 -2.5355 2.1631 14 6 1.9604 -2.3541 3.6356 15 1 1.3899 -1.5577 4.1134 16 6 1.8224 -3.6653 4.4119 17 6 0.3442 -4.1048 4.4482 18 6 0.1636 -4.7142 5.8607 19 6 1.0261 -3.7824 6.7478 20 6 2.2566 -3.4605 5.8739 21 6 3.4466 -1.9552 3.4831 22 6 3.5318 -1.3595 2.0950 23 8 4.4490 -0.6796 1.6859 24 1 -0.3634 0.0916 -1.0236 25 1 -0.3633 -0.9323 0.4324 26 1 -0.3634 0.8406 0.5911 27 1 -0.0748 3.0956 -1.3423 28 1 1.6084 -2.0286 -0.5130 29 1 3.1499 -1.1387 -0.5133 30 1 0.5004 -2.2051 2.0275 31 1 1.6335 -3.5787 1.8644 32 1 2.4319 -4.4401 3.9470 33 1 -0.3128 -3.2450 4.3168 34 1 0.1504 -4.8550 3.6815 35 1 0.5419 -5.7361 5.8917 36 1 -0.8822 -4.6788 6.1658 37 1 1.3299 -4.2973 7.6592 38 1 0.4792 -2.8707 6.9877 39 1 3.0758 -4.1366 6.1184 40 1 2.5651 -2.4268 6.0304 41 1 3.7225 -1.2166 4.2358 42 1 4.0872 -2.8337 3.5592 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842595964.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:06 Heat of formation + Delta-G solvation = -44.536617 kcal Electronic energy + Delta-G solvation = -21136.407589 eV Core-core repulsion = 18115.491319 eV Total energy + Delta-G solvation = -3020.916270 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.39686 -39.10813 -37.60640 -36.63579 -33.91885 -32.30324 -29.86046 -29.20934 -28.21475 -27.57206 -26.55529 -23.32154 -22.63144 -21.46955 -20.41379 -20.07823 -18.87125 -17.70158 -17.37045 -16.89207 -16.47566 -16.00034 -15.69175 -15.29451 -15.04439 -14.60890 -14.52252 -14.18500 -14.00416 -13.83180 -13.56408 -13.23904 -12.90885 -12.79530 -12.67113 -12.35302 -12.18972 -12.04672 -11.97811 -11.84468 -11.76565 -11.68066 -11.44754 -11.34791 -11.13758 -10.78713 -10.59090 -9.63250 -9.00543 -7.91684 -5.39838 1.38024 1.38478 1.50164 1.73996 2.37778 2.47282 3.26331 3.48105 3.49034 3.68132 3.75354 3.87138 4.03221 4.24236 4.28293 4.34175 4.61477 4.62746 4.68587 4.71167 4.73521 4.81200 4.82989 4.86224 4.91633 4.97880 5.02368 5.12785 5.19506 5.28003 5.31369 5.39369 5.48597 5.58347 5.59231 5.65313 5.67774 5.85473 6.23215 6.45107 7.08797 7.38497 7.76172 8.15012 9.10465 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.025644 B = 0.004876 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.597180 B = 5740.845773 C = 5963.611443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.607 5.607 3 C -0.262 4.262 4 H 0.053 0.947 5 C -0.043 4.043 6 N -0.931 5.931 7 Si 0.962 3.038 8 H -0.282 1.282 9 H -0.282 1.282 10 H -0.285 1.285 11 C 0.363 3.637 12 N -0.624 5.624 13 C 0.105 3.895 14 C -0.078 4.078 15 H 0.077 0.923 16 C -0.070 4.070 17 C -0.122 4.122 18 C -0.123 4.123 19 C -0.126 4.126 20 C -0.122 4.122 21 C -0.138 4.138 22 C 0.497 3.503 23 O -0.596 6.596 24 H 0.012 0.988 25 H 0.037 0.963 26 H 0.014 0.986 27 H 0.251 0.749 28 H 0.095 0.905 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.094 0.906 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.682 -17.565 14.471 22.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.331 5.331 3 C -0.392 4.392 4 H 0.070 0.930 5 C -0.238 4.238 6 N -0.578 5.578 7 Si 0.790 3.210 8 H -0.209 1.209 9 H -0.207 1.207 10 H -0.211 1.211 11 C 0.156 3.844 12 N -0.361 5.361 13 C -0.018 4.018 14 C -0.097 4.097 15 H 0.096 0.904 16 C -0.089 4.089 17 C -0.160 4.160 18 C -0.160 4.160 19 C -0.164 4.164 20 C -0.160 4.160 21 C -0.178 4.178 22 C 0.285 3.715 23 O -0.478 6.478 24 H 0.031 0.969 25 H 0.055 0.945 26 H 0.033 0.967 27 H 0.060 0.940 28 H 0.112 0.888 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.112 0.888 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.378 -17.053 14.054 22.141 hybrid contribution 0.362 1.556 -0.222 1.613 sum -1.016 -15.497 13.832 20.797 Atomic orbital electron populations 1.20621 0.81809 0.96158 0.98063 1.44723 1.02833 1.01872 1.83633 1.19365 0.96468 0.86850 1.36565 0.92955 1.25605 0.98171 1.01205 0.98818 1.70204 1.17980 1.27349 1.42223 0.85372 0.77542 0.80313 0.77799 1.20854 1.20725 1.21077 1.20704 0.95672 0.86714 0.81348 1.50152 1.20855 1.49569 1.15549 1.22319 0.93867 0.95134 0.90481 1.22224 0.93783 0.99249 0.94481 0.90423 1.21743 0.97597 0.94322 0.95259 1.22460 0.95146 1.00573 0.97822 1.22490 0.99865 0.99114 0.94542 1.22384 0.96268 0.99419 0.98335 1.22239 0.98353 1.01732 0.93674 1.22418 0.99367 1.02990 0.93006 1.21780 0.81636 0.78679 0.89388 1.90641 1.38694 1.41354 1.77088 0.96934 0.94455 0.96665 0.93971 0.88764 0.93263 0.91195 0.88910 0.89478 0.92085 0.90612 0.90808 0.91482 0.91135 0.92380 0.90793 0.92235 0.88753 0.86030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.65 8.96 127.77 1.15 9.80 16 2 N -0.61 -31.45 3.17 -738.78 -2.34 -33.79 16 3 C -0.26 -15.62 9.68 84.03 0.81 -14.80 16 4 H 0.05 3.34 7.58 -2.91 -0.02 3.32 16 5 C -0.04 -2.51 5.13 84.86 0.44 -2.08 16 6 N -0.93 -55.87 10.51 21.65 0.23 -55.65 16 7 Si 0.96 48.44 29.57 68.60 2.03 50.47 16 8 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 9 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 10 H -0.28 -14.49 7.11 99.48 0.71 -13.78 16 11 C 0.36 15.46 6.44 170.96 1.10 16.56 16 12 N -0.62 -22.77 3.17 -829.72 -2.63 -25.40 16 13 C 0.10 2.64 6.39 86.83 0.56 3.19 16 14 C -0.08 -1.69 2.31 -9.74 -0.02 -1.72 16 15 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 16 C -0.07 -1.05 2.26 -10.07 -0.02 -1.08 16 17 C -0.12 -1.69 5.85 31.67 0.19 -1.51 16 18 C -0.12 -1.49 6.91 31.89 0.22 -1.27 16 19 C -0.13 -1.66 6.83 31.69 0.22 -1.44 16 20 C -0.12 -1.72 6.17 31.34 0.19 -1.53 16 21 C -0.14 -3.60 5.85 30.59 0.18 -3.42 16 22 C 0.50 19.62 8.02 87.90 0.71 20.33 16 23 O -0.60 -30.19 17.31 -3.01 -0.05 -30.24 16 24 H 0.01 0.65 7.40 -2.39 -0.02 0.63 16 25 H 0.04 1.47 7.34 -2.39 -0.02 1.45 16 26 H 0.01 0.79 7.15 -2.39 -0.02 0.78 16 27 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 28 H 0.09 3.33 8.07 -2.39 -0.02 3.32 16 29 H 0.05 2.33 7.81 -2.39 -0.02 2.31 16 30 H 0.07 1.83 7.45 -2.39 -0.02 1.81 16 31 H 0.09 1.81 7.89 -2.39 -0.02 1.79 16 32 H 0.09 1.15 8.10 -2.39 -0.02 1.13 16 33 H 0.06 0.97 7.85 -2.39 -0.02 0.95 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.06 0.95 7.44 -2.38 -0.02 0.93 16 41 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 42 H 0.12 2.53 7.87 -2.39 -0.02 2.51 16 Total: -1.00 -73.58 331.29 3.91 -69.67 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: 0.97 Total: 3.91 kcal Atomic # 6 Polarization: 15.33 SS G_CDS: 5.70 Total: 21.04 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -4.74 Total: -114.84 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.05 Total: -30.24 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 2.03 Total: 50.47 kcal Total: -73.58 3.91 -69.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842595964.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.138 kcal (2) G-P(sol) polarization free energy of solvation -73.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds