Wall clock time and date at job start Mon Mar 30 2020 04:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99948 * 2 1 4 4 C 1.50702 * 109.47408 * 270.00393 * 3 2 1 5 5 H 1.07996 * 119.99650 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99986 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00336 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 119.99935 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47295 * 359.97438 * 8 6 4 10 10 H 1.48508 * 109.47165 * 120.00009 * 8 6 4 11 11 H 1.48496 * 109.47557 * 239.99814 * 8 6 4 12 12 C 1.34770 * 120.00043 * 180.02562 * 2 1 3 13 13 O 1.21281 * 120.00410 * 179.97438 * 12 2 1 14 14 C 1.50700 * 120.00011 * 359.97438 * 12 2 1 15 15 H 1.08995 * 110.18707 * 335.91068 * 14 12 2 16 16 C 1.54803 * 110.15159 * 97.64057 * 14 12 2 17 17 C 1.55337 * 104.99134 * 115.48376 * 16 14 12 18 18 C 1.53920 * 102.08257 * 337.79907 * 17 16 14 19 19 H 1.09000 * 111.00036 * 281.33626 * 18 17 16 20 20 C 1.52367 * 113.82941 * 155.33444 * 18 17 16 21 21 C 1.52279 * 108.25730 * 185.30254 * 20 18 17 22 22 C 1.52823 * 110.74974 * 55.98534 * 21 20 18 23 23 C 1.53632 * 110.61945 * 306.38105 * 22 21 20 24 24 N 1.45536 * 107.86288 * 57.15117 * 23 22 21 25 25 H 1.09004 * 109.46696 * 269.99713 * 1 2 3 26 26 H 1.09001 * 109.46642 * 29.99447 * 1 2 3 27 27 H 1.08994 * 109.47266 * 149.99884 * 1 2 3 28 28 H 1.09001 * 109.47164 * 30.00714 * 3 2 1 29 29 H 1.09000 * 109.47197 * 150.00406 * 3 2 1 30 30 H 0.97000 * 120.00321 * 180.02562 * 7 6 4 31 31 H 1.08998 * 110.33529 * 356.60691 * 16 14 12 32 32 H 1.09000 * 110.42693 * 234.40596 * 16 14 12 33 33 H 1.08998 * 110.90637 * 219.60966 * 17 16 14 34 34 H 1.08992 * 110.90643 * 95.99918 * 17 16 14 35 35 H 1.08990 * 109.83522 * 304.28439 * 20 18 17 36 36 H 1.09005 * 109.83265 * 65.17845 * 20 18 17 37 37 H 1.08997 * 108.96446 * 295.78858 * 21 20 18 38 38 H 1.09002 * 109.39200 * 176.45433 * 21 20 18 39 39 H 1.08999 * 109.24202 * 186.10470 * 22 21 20 40 40 H 1.08997 * 109.24431 * 66.66817 * 22 21 20 41 41 H 1.09000 * 109.78571 * 176.73921 * 23 22 21 42 42 H 1.08996 * 109.78901 * 297.50561 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1268 2.8776 -1.6727 7 7 3.5542 3.6176 -0.6731 8 14 3.4387 3.4166 -3.4338 9 1 2.8616 2.4161 -4.3672 10 1 2.8016 4.7376 -3.6674 11 1 4.9013 3.5244 -3.6669 12 6 2.1389 -1.1671 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4722 -0.0005 15 1 0.3887 -2.3311 0.4174 16 6 1.2855 -3.0304 -1.4410 17 6 2.0937 -4.3567 -1.4149 18 6 3.0199 -4.1458 -0.2038 19 1 3.8621 -3.5044 -0.4631 20 6 3.5001 -5.4421 0.4370 21 6 4.2910 -5.0906 1.6899 22 6 3.4496 -4.2395 2.6403 23 6 2.8896 -3.0082 1.9119 24 7 2.1178 -3.4773 0.7707 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3633 0.8901 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 1.6085 2.0284 0.5139 29 1 3.1499 1.1384 0.5138 30 1 4.0310 4.4436 -0.8503 31 1 1.7284 -2.3308 -2.1498 32 1 0.2454 -3.2257 -1.7020 33 1 2.6724 -4.4776 -2.3307 34 1 1.4350 -5.2105 -1.2570 35 1 2.6439 -6.0556 0.7171 36 1 4.1331 -5.9881 -0.2626 37 1 5.1820 -4.5329 1.4015 38 1 4.5904 -6.0073 2.1980 39 1 4.0704 -3.9119 3.4742 40 1 2.6225 -4.8382 3.0218 41 1 2.2457 -2.4424 2.5851 42 1 3.7098 -2.3774 1.5693 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900357394.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:15 Heat of formation + Delta-G solvation = -34.124457 kcal Electronic energy + Delta-G solvation = -21674.023991 eV Core-core repulsion = 18653.559226 eV Total energy + Delta-G solvation = -3020.464765 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.53062 -38.00071 -34.86260 -34.78647 -32.62200 -32.03997 -29.31249 -28.24496 -27.10004 -25.69018 -23.45100 -22.76428 -21.40987 -20.92524 -19.75499 -18.22495 -16.57935 -16.51228 -15.87359 -15.32788 -14.94926 -14.56860 -14.35480 -14.07614 -13.77236 -13.44185 -13.10850 -12.77059 -12.38964 -12.25497 -12.10859 -12.04701 -11.78098 -11.48861 -11.21385 -11.17080 -10.91296 -10.76445 -10.61706 -10.57529 -10.49523 -10.25178 -10.18597 -10.10276 -9.62266 -9.40234 -8.45767 -7.87359 -7.56436 -6.06078 -4.10897 3.27868 3.30652 3.35928 3.40388 3.97921 4.17940 4.43004 4.66877 4.79012 5.01518 5.08301 5.11738 5.21062 5.27877 5.33680 5.52967 5.59364 5.62140 5.68714 5.75887 5.87092 5.92056 5.94255 5.97532 6.00885 6.08664 6.15451 6.15619 6.22065 6.24964 6.30818 6.41359 6.59358 7.03070 7.15185 7.39311 7.42892 7.53430 7.90316 8.21886 8.40934 8.88343 9.07390 9.54352 11.02058 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.025585 B = 0.005331 C = 0.005265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.121594 B = 5250.961331 C = 5316.705025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.600 5.600 3 C 0.244 3.756 4 C -0.524 4.524 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.484 3.516 13 O -0.540 6.540 14 C 0.057 3.943 15 H 0.099 0.901 16 C -0.113 4.113 17 C -0.111 4.111 18 C 0.061 3.939 19 H 0.071 0.929 20 C -0.102 4.102 21 C -0.119 4.119 22 C -0.109 4.109 23 C 0.041 3.959 24 N -0.510 5.510 25 H 0.044 0.956 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.031 0.969 29 H 0.042 0.958 30 H 0.263 0.737 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.385 -16.211 2.822 17.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.332 5.332 3 C 0.125 3.875 4 C -0.563 4.563 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.270 3.730 13 O -0.419 6.419 14 C -0.055 4.055 15 H 0.117 0.883 16 C -0.151 4.151 17 C -0.149 4.149 18 C -0.047 4.047 19 H 0.089 0.911 20 C -0.139 4.139 21 C -0.157 4.157 22 C -0.147 4.147 23 C -0.086 4.086 24 N -0.235 5.235 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.009 -16.317 3.120 17.352 hybrid contribution 0.615 1.251 -1.179 1.825 sum -4.395 -15.067 1.941 15.814 Atomic orbital electron populations 1.21662 0.81510 1.02583 1.00423 1.48259 1.06191 1.07968 1.70776 1.19279 0.92489 0.78268 0.97501 1.21448 1.36366 1.06214 0.92254 0.92496 1.24940 0.95370 0.96402 0.97432 1.69941 1.38454 1.14341 1.30676 0.86447 0.78084 0.78335 0.84586 1.19813 1.20913 1.20880 1.21263 0.88483 0.85744 0.77528 1.90602 1.13916 1.87132 1.50209 1.22368 0.98389 0.89290 0.95494 0.88320 1.22524 1.01072 0.97120 0.94426 1.22318 0.97832 0.97219 0.97551 1.22660 0.95189 0.95590 0.91278 0.91118 1.21225 0.99710 0.96497 0.96513 1.21318 0.98682 0.99436 0.96269 1.21546 0.99089 0.96485 0.97584 1.22201 0.97752 0.96663 0.92033 1.63240 1.26752 1.26116 1.07347 0.93767 0.90709 0.92288 0.95121 0.94031 0.92770 0.90787 0.90564 0.91172 0.90797 0.91347 0.91884 0.92336 0.92263 0.91986 0.91843 0.91697 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 9.87 59.85 0.59 1.93 16 2 N -0.60 -12.94 2.86 -182.95 -0.52 -13.46 16 3 C 0.24 6.48 5.16 -5.19 -0.03 6.46 16 4 C -0.52 -15.00 9.39 -34.44 -0.32 -15.32 16 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 8 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 12 C 0.48 10.17 5.80 -10.99 -0.06 10.10 16 13 O -0.54 -13.44 12.77 5.56 0.07 -13.37 16 14 C 0.06 0.91 2.76 -68.22 -0.19 0.72 16 15 H 0.10 1.42 6.36 -51.93 -0.33 1.09 16 16 C -0.11 -1.60 6.59 -24.54 -0.16 -1.76 16 17 C -0.11 -1.41 6.63 -25.01 -0.17 -1.58 16 18 C 0.06 0.88 2.34 -66.58 -0.16 0.73 16 19 H 0.07 1.27 7.09 -51.93 -0.37 0.90 16 20 C -0.10 -1.20 5.62 -27.42 -0.15 -1.36 16 21 C -0.12 -1.42 5.90 -27.19 -0.16 -1.58 16 22 C -0.11 -1.39 6.07 -26.49 -0.16 -1.55 16 23 C 0.04 0.66 4.87 -4.23 -0.02 0.64 16 24 N -0.51 -7.85 4.61 -218.53 -1.01 -8.86 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 27 H 0.06 0.79 6.40 -51.93 -0.33 0.46 16 28 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 29 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.07 1.21 7.71 -51.93 -0.40 0.81 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.07 1.36 5.73 -51.93 -0.30 1.06 16 LS Contribution 323.34 15.07 4.87 4.87 Total: -1.00 -32.35 323.34 -9.11 -41.45 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -7.15 Total: -0.59 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -1.09 Total: -0.92 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -0.79 Total: -48.44 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.07 Total: -13.37 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.35 -9.11 -41.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900357394.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.329 kcal (2) G-P(sol) polarization free energy of solvation -32.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds