Wall clock time and date at job start Mon Mar 30 2020 04:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99948 * 2 1 4 4 C 1.50702 * 109.47408 * 270.00393 * 3 2 1 5 5 H 1.07996 * 119.99650 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99986 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00336 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 119.99935 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47295 * 359.97438 * 8 6 4 10 10 H 1.48508 * 109.47165 * 120.00009 * 8 6 4 11 11 H 1.48496 * 109.47557 * 239.99814 * 8 6 4 12 12 C 1.34770 * 120.00043 * 180.02562 * 2 1 3 13 13 O 1.21281 * 120.00410 * 179.97438 * 12 2 1 14 14 C 1.50700 * 120.00011 * 359.97438 * 12 2 1 15 15 H 1.08995 * 110.18707 * 335.91068 * 14 12 2 16 16 C 1.54803 * 110.15159 * 97.64057 * 14 12 2 17 17 C 1.55337 * 104.99134 * 115.48376 * 16 14 12 18 18 C 1.53920 * 102.08257 * 337.79907 * 17 16 14 19 19 H 1.09000 * 111.00036 * 281.33626 * 18 17 16 20 20 C 1.52367 * 113.82941 * 155.33444 * 18 17 16 21 21 C 1.52279 * 108.25730 * 185.30254 * 20 18 17 22 22 C 1.52823 * 110.74974 * 55.98534 * 21 20 18 23 23 C 1.53632 * 110.61945 * 306.38105 * 22 21 20 24 24 N 1.45536 * 107.86288 * 57.15117 * 23 22 21 25 25 H 1.09004 * 109.46696 * 269.99713 * 1 2 3 26 26 H 1.09001 * 109.46642 * 29.99447 * 1 2 3 27 27 H 1.08994 * 109.47266 * 149.99884 * 1 2 3 28 28 H 1.09001 * 109.47164 * 30.00714 * 3 2 1 29 29 H 1.09000 * 109.47197 * 150.00406 * 3 2 1 30 30 H 0.97000 * 120.00321 * 180.02562 * 7 6 4 31 31 H 1.08998 * 110.33529 * 356.60691 * 16 14 12 32 32 H 1.09000 * 110.42693 * 234.40596 * 16 14 12 33 33 H 1.08998 * 110.90637 * 219.60966 * 17 16 14 34 34 H 1.08992 * 110.90643 * 95.99918 * 17 16 14 35 35 H 1.08990 * 109.83522 * 304.28439 * 20 18 17 36 36 H 1.09005 * 109.83265 * 65.17845 * 20 18 17 37 37 H 1.08997 * 108.96446 * 295.78858 * 21 20 18 38 38 H 1.09002 * 109.39200 * 176.45433 * 21 20 18 39 39 H 1.08999 * 109.24202 * 186.10470 * 22 21 20 40 40 H 1.08997 * 109.24431 * 66.66817 * 22 21 20 41 41 H 1.09000 * 109.78571 * 176.73921 * 23 22 21 42 42 H 1.08996 * 109.78901 * 297.50561 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1268 2.8776 -1.6727 7 7 3.5542 3.6176 -0.6731 8 14 3.4387 3.4166 -3.4338 9 1 2.8616 2.4161 -4.3672 10 1 2.8016 4.7376 -3.6674 11 1 4.9013 3.5244 -3.6669 12 6 2.1389 -1.1671 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4722 -0.0005 15 1 0.3887 -2.3311 0.4174 16 6 1.2855 -3.0304 -1.4410 17 6 2.0937 -4.3567 -1.4149 18 6 3.0199 -4.1458 -0.2038 19 1 3.8621 -3.5044 -0.4631 20 6 3.5001 -5.4421 0.4370 21 6 4.2910 -5.0906 1.6899 22 6 3.4496 -4.2395 2.6403 23 6 2.8896 -3.0082 1.9119 24 7 2.1178 -3.4773 0.7707 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3633 0.8901 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 1.6085 2.0284 0.5139 29 1 3.1499 1.1384 0.5138 30 1 4.0310 4.4436 -0.8503 31 1 1.7284 -2.3308 -2.1498 32 1 0.2454 -3.2257 -1.7020 33 1 2.6724 -4.4776 -2.3307 34 1 1.4350 -5.2105 -1.2570 35 1 2.6439 -6.0556 0.7171 36 1 4.1331 -5.9881 -0.2626 37 1 5.1820 -4.5329 1.4015 38 1 4.5904 -6.0073 2.1980 39 1 4.0704 -3.9119 3.4742 40 1 2.6225 -4.8382 3.0218 41 1 2.2457 -2.4424 2.5851 42 1 3.7098 -2.3774 1.5693 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900357394.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:14 Heat of formation + Delta-G solvation = -56.065603 kcal Electronic energy + Delta-G solvation = -21674.975431 eV Core-core repulsion = 18653.559226 eV Total energy + Delta-G solvation = -3021.416205 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.89359 -39.49204 -36.62196 -35.97506 -34.74154 -33.20609 -30.69519 -29.81206 -28.47836 -27.30380 -25.27595 -23.97324 -22.79579 -22.07957 -20.93086 -19.78007 -18.72631 -18.08789 -17.36199 -16.66947 -16.48149 -16.20924 -15.91656 -15.27839 -15.10116 -14.72574 -14.49664 -14.09131 -13.92321 -13.71139 -13.51682 -13.47076 -13.31806 -13.06905 -12.83823 -12.64426 -12.50450 -12.29509 -12.25454 -11.91744 -11.76825 -11.66817 -11.53279 -11.27947 -11.19831 -10.96680 -10.70265 -9.52509 -9.16706 -8.27422 -6.42948 1.32206 1.34661 1.46625 1.71689 2.27762 2.42137 2.94324 3.01873 3.52487 3.68409 3.70956 4.01412 4.03985 4.12978 4.22140 4.36716 4.40119 4.47327 4.55808 4.65322 4.68886 4.75040 4.84783 4.91126 4.93067 4.94251 4.99400 5.05685 5.09472 5.12642 5.16194 5.20334 5.28692 5.33619 5.50410 5.53425 5.79142 5.94192 6.00646 6.10884 6.64388 6.74216 7.22960 7.42759 8.80007 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.025585 B = 0.005331 C = 0.005265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.121594 B = 5250.961331 C = 5316.705025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.610 5.610 3 C 0.260 3.740 4 C -0.540 4.540 5 H 0.052 0.948 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.970 3.030 9 H -0.266 1.266 10 H -0.266 1.266 11 H -0.282 1.282 12 C 0.475 3.525 13 O -0.591 6.591 14 C 0.061 3.939 15 H 0.127 0.873 16 C -0.112 4.112 17 C -0.103 4.103 18 C 0.054 3.946 19 H 0.024 0.976 20 C -0.095 4.095 21 C -0.121 4.121 22 C -0.103 4.103 23 C 0.041 3.959 24 N -0.497 5.497 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.021 0.979 29 H -0.008 1.008 30 H 0.268 0.732 31 H 0.043 0.957 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.036 0.964 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.427 -18.686 1.876 20.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.341 5.341 3 C 0.138 3.862 4 C -0.579 4.579 5 H 0.070 0.930 6 C -0.193 4.193 7 N -0.570 5.570 8 Si 0.794 3.206 9 H -0.190 1.190 10 H -0.191 1.191 11 H -0.208 1.208 12 C 0.263 3.737 13 O -0.472 6.472 14 C -0.051 4.051 15 H 0.144 0.856 16 C -0.151 4.151 17 C -0.141 4.141 18 C -0.053 4.053 19 H 0.042 0.958 20 C -0.132 4.132 21 C -0.158 4.158 22 C -0.141 4.141 23 C -0.087 4.087 24 N -0.221 5.221 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.113 0.887 28 H 0.039 0.961 29 H 0.010 0.990 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.133 0.867 33 H 0.094 0.906 34 H 0.123 0.877 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.055 0.945 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -7.098 -18.813 2.180 20.225 hybrid contribution 1.281 2.047 -0.818 2.549 sum -5.816 -16.766 1.362 17.799 Atomic orbital electron populations 1.21956 0.77970 1.04101 1.02499 1.48319 1.08442 1.06480 1.70872 1.18719 0.90821 0.80548 0.96095 1.21685 1.36828 1.06531 0.92831 0.92966 1.25896 0.94817 0.96378 1.02164 1.70062 1.38946 1.14843 1.33108 0.85338 0.77882 0.78525 0.78888 1.19031 1.19136 1.20778 1.22351 0.88251 0.87152 0.75962 1.90588 1.16519 1.87970 1.52146 1.22571 0.98666 0.86330 0.97495 0.85570 1.22600 1.03453 0.97005 0.91998 1.22366 0.97604 0.97373 0.96773 1.22744 0.94138 0.96066 0.92400 0.95822 1.21224 1.00535 0.95078 0.96409 1.21355 0.97758 1.00124 0.96583 1.21527 0.99828 0.95194 0.97522 1.22154 0.96278 0.97747 0.92536 1.63418 1.26499 1.25003 1.07157 0.91338 0.91284 0.88686 0.96099 0.99012 0.92356 0.93818 0.86672 0.90561 0.87662 0.89468 0.90276 0.94491 0.89422 0.91481 0.89933 0.92270 0.95873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.39 9.87 127.77 1.26 3.65 16 2 N -0.61 -27.07 2.86 -851.13 -2.43 -29.50 16 3 C 0.26 14.60 5.16 85.63 0.44 15.05 16 4 C -0.54 -32.03 9.39 25.60 0.24 -31.79 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.37 5.46 84.65 0.46 0.83 16 7 N -0.93 -57.56 13.29 21.45 0.28 -57.27 16 8 Si 0.97 45.74 29.54 68.60 2.03 47.76 16 9 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 12 C 0.48 20.66 5.80 87.66 0.51 21.17 16 13 O -0.59 -31.67 12.77 -3.03 -0.04 -31.71 16 14 C 0.06 1.90 2.76 44.89 0.12 2.02 16 15 H 0.13 3.20 6.36 -2.39 -0.02 3.19 16 16 C -0.11 -2.93 6.59 32.01 0.21 -2.71 16 17 C -0.10 -2.34 6.63 31.71 0.21 -2.13 16 18 C 0.05 1.54 2.34 44.67 0.10 1.64 16 19 H 0.02 0.90 7.09 -2.39 -0.02 0.88 16 20 C -0.09 -2.01 5.62 30.15 0.17 -1.84 16 21 C -0.12 -2.69 5.90 30.30 0.18 -2.51 16 22 C -0.10 -2.50 6.07 30.75 0.19 -2.32 16 23 C 0.04 1.35 4.87 86.77 0.42 1.77 16 24 N -0.50 -14.76 4.61 -845.28 -3.90 -18.66 16 25 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 27 H 0.09 2.26 6.40 -2.39 -0.02 2.24 16 28 H 0.02 1.19 8.07 -2.39 -0.02 1.17 16 29 H -0.01 -0.54 7.42 -2.39 -0.02 -0.56 16 30 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 31 H 0.04 1.41 7.71 -2.39 -0.02 1.39 16 32 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.10 1.79 8.12 -2.39 -0.02 1.77 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.02 0.98 5.73 -2.39 -0.01 0.97 16 Total: -1.00 -75.96 323.34 1.44 -74.51 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.98 Total: 12.02 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 4.52 Total: 2.84 kcal Atomic # 7 Polarization: -99.39 SS G_CDS: -6.04 Total: -105.43 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -0.04 Total: -31.71 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -75.96 1.44 -74.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900357394.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.448 kcal (2) G-P(sol) polarization free energy of solvation -75.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds