Wall clock time and date at job start Mon Mar 30 2020 04:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46496 * 119.99759 * 2 1 4 4 C 1.50695 * 109.47390 * 89.99689 * 3 2 1 5 5 H 1.08001 * 120.00425 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99997 * 179.97438 * 4 3 2 7 7 N 1.31507 * 119.99974 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99547 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47248 * 60.00594 * 8 6 4 10 10 H 1.48505 * 109.46948 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47363 * 299.99678 * 8 6 4 12 12 C 1.34771 * 120.00084 * 179.97438 * 2 1 3 13 13 O 1.21283 * 120.00062 * 180.02562 * 12 2 1 14 14 C 1.50700 * 120.00216 * 0.02562 * 12 2 1 15 15 H 1.09001 * 110.12659 * 59.30078 * 14 12 2 16 16 C 1.54806 * 110.15252 * 297.60569 * 14 12 2 17 17 C 1.55484 * 104.91408 * 237.25224 * 16 14 12 18 18 C 1.53921 * 102.08714 * 337.74467 * 17 16 14 19 19 H 1.08994 * 111.54262 * 281.12365 * 18 17 16 20 20 C 1.52369 * 113.27043 * 155.12246 * 18 17 16 21 21 C 1.53634 * 107.60181 * 185.06917 * 20 18 17 22 22 C 1.52830 * 110.61161 * 56.40456 * 21 20 18 23 23 C 1.53633 * 110.64498 * 306.13515 * 22 21 20 24 24 N 1.45538 * 107.86023 * 57.13179 * 23 22 21 25 25 H 1.09001 * 109.47060 * 90.00688 * 1 2 3 26 26 H 1.09004 * 109.47073 * 210.00177 * 1 2 3 27 27 H 1.09000 * 109.47212 * 330.00260 * 1 2 3 28 28 H 1.09001 * 109.47057 * 210.00204 * 3 2 1 29 29 H 1.08999 * 109.47333 * 329.99764 * 3 2 1 30 30 H 0.96998 * 119.99696 * 179.97438 * 7 6 4 31 31 H 1.08996 * 110.33790 * 356.10822 * 16 14 12 32 32 H 1.09000 * 110.33648 * 118.35153 * 16 14 12 33 33 H 1.09001 * 110.87016 * 219.56612 * 17 16 14 34 34 H 1.08999 * 110.97513 * 95.97249 * 17 16 14 35 35 H 1.09004 * 109.82809 * 304.58903 * 20 18 17 36 36 H 1.08996 * 109.83386 * 65.46991 * 20 18 17 37 37 H 1.08998 * 109.24863 * 176.69573 * 21 20 18 38 38 H 1.08997 * 109.24358 * 296.15696 * 21 20 18 39 39 H 1.09000 * 109.23931 * 66.43672 * 22 21 20 40 40 H 1.08996 * 109.23952 * 185.87795 * 22 21 20 41 41 H 1.09001 * 109.78761 * 297.54505 * 23 22 21 42 42 H 1.09001 * 109.78206 * 176.72315 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 1.4207 5 1 2.0981 1.0959 2.2417 6 6 3.1268 2.8776 1.6726 7 7 3.5541 3.6177 0.6730 8 14 3.4386 3.4165 3.4338 9 1 4.2411 2.3814 4.1335 10 1 4.1821 4.7021 3.4338 11 1 2.1413 3.5945 4.1341 12 6 2.1389 -1.1671 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 0.0005 15 1 0.7458 -2.5361 -0.8797 16 6 0.5351 -2.5972 1.2881 17 6 1.0159 -3.9149 1.9589 18 6 1.6269 -4.6777 0.7697 19 1 0.8569 -5.1445 0.1555 20 6 2.6824 -5.6949 1.1853 21 6 3.2917 -6.2825 -0.0968 22 6 3.8561 -5.1720 -0.9822 23 6 2.7877 -4.1029 -1.2575 24 7 2.3229 -3.5957 0.0250 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 3.1499 1.1384 -0.5139 29 1 1.6084 2.0284 -0.5139 30 1 4.0309 4.4436 0.8503 31 1 0.7177 -1.7480 1.9465 32 1 -0.5237 -2.6628 1.0378 33 1 0.1751 -4.4641 2.3827 34 1 1.7695 -3.7129 2.7200 35 1 3.4587 -5.2035 1.7720 36 1 2.2206 -6.4877 1.7737 37 1 4.0927 -6.9720 0.1693 38 1 2.5205 -6.8223 -0.6463 39 1 4.7061 -4.7096 -0.4803 40 1 4.1870 -5.6002 -1.9283 41 1 1.9543 -4.5459 -1.8028 42 1 3.2207 -3.2901 -1.8406 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900357395.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:16 Heat of formation + Delta-G solvation = -51.056878 kcal Electronic energy + Delta-G solvation = -21459.822768 eV Core-core repulsion = 18438.623758 eV Total energy + Delta-G solvation = -3021.199010 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.54987 -39.69496 -36.56138 -35.94060 -34.65323 -33.16820 -30.88965 -29.57126 -28.46087 -27.28146 -25.16263 -23.98000 -22.78382 -22.09989 -20.69434 -19.98388 -18.67574 -17.69966 -17.33213 -16.94150 -16.47603 -15.90176 -15.73739 -15.32004 -14.99388 -14.67229 -14.36774 -14.22442 -13.91778 -13.76045 -13.70088 -13.42138 -13.25486 -13.04098 -12.88610 -12.57760 -12.38575 -12.27595 -12.19957 -12.01837 -11.72673 -11.63937 -11.54897 -11.25824 -11.20157 -10.65180 -10.47921 -9.38872 -9.15702 -8.22739 -6.37918 1.34769 1.40042 1.47113 1.88527 2.25689 2.40673 3.05709 3.06916 3.51406 3.63682 3.86300 3.96789 4.04581 4.11476 4.18697 4.29523 4.40218 4.44736 4.49885 4.62484 4.69382 4.73944 4.80750 4.91248 4.92553 4.98633 5.00325 5.03314 5.10113 5.14133 5.21180 5.23625 5.29984 5.35729 5.53450 5.56358 5.85155 6.06016 6.09463 6.30533 6.70225 6.84868 7.28598 7.57073 8.84184 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.025804 B = 0.005063 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.836668 B = 5529.038164 C = 5546.196694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.613 5.613 3 C 0.262 3.738 4 C -0.541 4.541 5 H 0.052 0.948 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.969 3.031 9 H -0.280 1.280 10 H -0.277 1.277 11 H -0.257 1.257 12 C 0.499 3.501 13 O -0.584 6.584 14 C 0.075 3.925 15 H 0.086 0.914 16 C -0.117 4.117 17 C -0.110 4.110 18 C 0.070 3.930 19 H 0.077 0.923 20 C -0.105 4.105 21 C -0.112 4.112 22 C -0.112 4.112 23 C 0.067 3.933 24 N -0.545 5.545 25 H 0.066 0.934 26 H 0.100 0.900 27 H 0.066 0.934 28 H -0.009 1.009 29 H 0.022 0.978 30 H 0.267 0.733 31 H 0.056 0.944 32 H 0.118 0.882 33 H 0.109 0.891 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.041 0.959 40 H 0.080 0.920 41 H 0.051 0.949 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.541 -20.217 -0.501 22.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.345 5.345 3 C 0.140 3.860 4 C -0.579 4.579 5 H 0.070 0.930 6 C -0.192 4.192 7 N -0.570 5.570 8 Si 0.793 3.207 9 H -0.206 1.206 10 H -0.202 1.202 11 H -0.182 1.182 12 C 0.287 3.713 13 O -0.464 6.464 14 C -0.037 4.037 15 H 0.104 0.896 16 C -0.155 4.155 17 C -0.148 4.148 18 C -0.036 4.036 19 H 0.094 0.906 20 C -0.143 4.143 21 C -0.150 4.150 22 C -0.150 4.150 23 C -0.061 4.061 24 N -0.271 5.271 25 H 0.084 0.916 26 H 0.118 0.882 27 H 0.085 0.915 28 H 0.010 0.990 29 H 0.040 0.960 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.136 0.864 33 H 0.127 0.873 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.382 -19.858 -0.356 21.966 hybrid contribution 0.253 1.049 -0.018 1.079 sum -9.129 -18.809 -0.374 20.911 Atomic orbital electron populations 1.22145 0.78177 1.04477 1.02464 1.48147 1.08285 1.06168 1.71904 1.18697 0.90829 0.80431 0.96028 1.21652 1.36887 1.06468 0.92924 0.92992 1.25887 0.94832 0.96397 1.02113 1.70050 1.38939 1.14821 1.33168 0.85458 0.78946 0.77304 0.79040 1.20555 1.20182 1.18155 1.21332 0.87871 0.86163 0.75907 1.90608 1.16673 1.87845 1.51227 1.21899 0.92336 0.88405 1.01109 0.89606 1.22775 0.99956 0.99115 0.93658 1.22443 1.00998 0.94640 0.96728 1.22724 0.95016 0.91236 0.94649 0.90562 1.21542 0.97494 0.97539 0.97718 1.21538 1.00886 0.96830 0.95703 1.21567 0.97366 0.95532 1.00491 1.21893 0.97915 0.96891 0.89423 1.62132 1.39007 1.05616 1.20381 0.91580 0.88194 0.91503 0.99040 0.95965 0.92398 0.92481 0.86413 0.87260 0.92573 0.93363 0.88932 0.90919 0.90573 0.93982 0.90185 0.93093 0.94079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.17 10.02 127.77 1.28 3.45 16 2 N -0.61 -27.63 2.85 -851.13 -2.43 -30.06 16 3 C 0.26 14.90 5.16 85.63 0.44 15.34 16 4 C -0.54 -32.46 9.39 25.60 0.24 -32.22 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.38 5.46 84.66 0.46 0.85 16 7 N -0.93 -58.07 13.29 21.45 0.28 -57.79 16 8 Si 0.97 46.23 29.54 68.60 2.03 48.26 16 9 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 12 C 0.50 22.63 6.92 87.66 0.61 23.23 16 13 O -0.58 -33.33 16.05 -3.04 -0.05 -33.38 16 14 C 0.07 2.33 2.25 44.89 0.10 2.44 16 15 H 0.09 2.26 8.01 -2.39 -0.02 2.25 16 16 C -0.12 -2.83 4.64 32.07 0.15 -2.68 16 17 C -0.11 -2.31 6.61 31.76 0.21 -2.10 16 18 C 0.07 1.51 2.63 44.68 0.12 1.63 16 19 H 0.08 1.30 8.05 -2.39 -0.02 1.28 16 20 C -0.11 -2.06 5.68 30.60 0.17 -1.89 16 21 C -0.11 -2.01 5.94 30.75 0.18 -1.83 16 22 C -0.11 -2.66 6.06 30.75 0.19 -2.47 16 23 C 0.07 1.86 5.85 86.77 0.51 2.37 16 24 N -0.55 -16.75 3.80 -845.28 -3.21 -19.96 16 25 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.10 2.40 4.11 -2.38 -0.01 2.39 16 27 H 0.07 2.18 8.07 -2.39 -0.02 2.16 16 28 H -0.01 -0.56 7.42 -2.39 -0.02 -0.58 16 29 H 0.02 1.28 8.07 -2.39 -0.02 1.26 16 30 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 31 H 0.06 1.72 7.27 -2.39 -0.02 1.70 16 32 H 0.12 1.86 7.45 -2.39 -0.02 1.84 16 33 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 35 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.05 1.15 8.04 -2.39 -0.02 1.13 16 42 H 0.04 1.40 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -79.75 327.43 2.26 -77.49 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 0.97 Total: 9.33 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 4.66 Total: 6.11 kcal Atomic # 7 Polarization: -102.46 SS G_CDS: -5.35 Total: -107.81 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.05 Total: -33.38 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -79.75 2.26 -77.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900357395.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.431 kcal (2) G-P(sol) polarization free energy of solvation -79.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds