Wall clock time and date at job start Mon Mar 30 2020 04:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46497 * 119.99971 * 2 1 4 4 C 1.50703 * 109.47464 * 269.99944 * 3 2 1 5 5 H 1.08000 * 119.99325 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00245 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99906 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 119.99893 * 359.97438 * 6 4 3 9 9 H 1.48503 * 109.46759 * 90.00297 * 8 6 4 10 10 H 1.48496 * 109.47127 * 209.99865 * 8 6 4 11 11 H 1.48493 * 109.47223 * 330.00331 * 8 6 4 12 12 C 1.34778 * 119.99824 * 179.97438 * 2 1 3 13 13 O 1.21284 * 119.99910 * 179.97438 * 12 2 1 14 14 C 1.50697 * 120.00201 * 0.02562 * 12 2 1 15 15 H 1.09002 * 110.18723 * 301.73145 * 14 12 2 16 16 C 1.54804 * 110.15358 * 63.46594 * 14 12 2 17 17 C 1.55322 * 104.99218 * 122.76950 * 16 14 12 18 18 C 1.53929 * 102.08647 * 22.19402 * 17 16 14 19 19 H 1.09000 * 110.99967 * 78.67168 * 18 17 16 20 20 C 1.52364 * 113.26502 * 204.92314 * 18 17 16 21 21 C 1.53547 * 107.58293 * 174.91870 * 20 18 17 22 22 C 1.52823 * 110.65997 * 303.57136 * 21 20 18 23 23 C 1.53642 * 110.60758 * 53.88446 * 22 21 20 24 24 N 1.45528 * 107.86090 * 302.88537 * 23 22 21 25 25 H 1.08999 * 109.47416 * 270.00220 * 1 2 3 26 26 H 1.09000 * 109.47090 * 29.99659 * 1 2 3 27 27 H 1.08998 * 109.47186 * 149.99687 * 1 2 3 28 28 H 1.09003 * 109.47435 * 30.00418 * 3 2 1 29 29 H 1.09001 * 109.47120 * 149.99826 * 3 2 1 30 30 H 0.97001 * 119.99462 * 180.02562 * 7 6 4 31 31 H 1.08997 * 110.33356 * 241.65120 * 16 14 12 32 32 H 1.08997 * 110.33469 * 3.88835 * 16 14 12 33 33 H 1.09001 * 110.91077 * 140.39416 * 17 16 14 34 34 H 1.09004 * 110.90970 * 263.96512 * 17 16 14 35 35 H 1.09005 * 109.83698 * 294.45196 * 20 18 17 36 36 H 1.09001 * 109.83194 * 55.33272 * 20 18 17 37 37 H 1.09005 * 109.19988 * 183.27987 * 21 20 18 38 38 H 1.09001 * 109.24939 * 63.89543 * 21 20 18 39 39 H 1.09002 * 109.24333 * 293.60493 * 22 21 20 40 40 H 1.09001 * 109.24360 * 174.16102 * 22 21 20 41 41 H 1.08999 * 109.78120 * 62.48191 * 23 22 21 42 42 H 1.08997 * 109.77842 * 183.29519 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2416 6 6 3.1269 2.8775 -1.6727 7 7 3.3457 3.2574 -2.9126 8 14 3.7338 3.9287 -0.2528 9 1 5.1069 3.5068 0.1237 10 1 3.7498 5.3553 -0.6647 11 1 2.8273 3.7596 0.9111 12 6 2.1388 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3854 -2.4723 0.0005 15 1 0.7310 -2.5288 0.8704 16 6 0.5569 -2.6099 -1.3000 17 6 1.0466 -3.9327 -1.9502 18 6 1.6387 -4.6846 -0.7446 19 1 0.8517 -5.1385 -0.1424 20 6 2.7006 -5.7054 -1.1343 21 6 3.2892 -6.2804 0.1620 22 6 3.8404 -5.1626 1.0463 23 6 2.7677 -4.0912 1.2952 24 7 2.3229 -3.5958 0.0011 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5139 28 1 1.6084 2.0284 0.5139 29 1 3.1499 1.1384 0.5139 30 1 3.8232 4.0829 -3.0898 31 1 -0.5060 -2.6730 -1.0670 32 1 0.7508 -1.7672 -1.9635 33 1 0.2126 -4.4858 -2.3823 34 1 1.8119 -3.7370 -2.7013 35 1 2.2479 -6.5043 -1.7216 36 1 3.4853 -5.2195 -1.7144 37 1 4.0940 -6.9726 -0.0858 38 1 2.5097 -6.8160 0.7040 39 1 4.6981 -4.7046 0.5536 40 1 4.1568 -5.5827 2.0011 41 1 1.9261 -4.5294 1.8316 42 1 3.1915 -3.2731 1.8776 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900357396.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:18 Heat of formation + Delta-G solvation = -24.194608 kcal Electronic energy + Delta-G solvation = -21481.258071 eV Core-core repulsion = 18461.223896 eV Total energy + Delta-G solvation = -3020.034175 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.34183 -38.28467 -34.94966 -34.75076 -32.47681 -32.16496 -29.71132 -28.41055 -27.28276 -25.81895 -23.36742 -22.64119 -21.34035 -21.08996 -19.74749 -18.38394 -16.91568 -16.28740 -15.98929 -15.64824 -14.89900 -14.42566 -14.28830 -14.13356 -13.69771 -13.55555 -13.30091 -12.77305 -12.65307 -12.52292 -12.25010 -12.14444 -11.92676 -11.52767 -11.39429 -11.27022 -10.96855 -10.83589 -10.70561 -10.59704 -10.49602 -10.33223 -10.26807 -10.09257 -9.48559 -8.90688 -8.54555 -8.05324 -7.59758 -6.04426 -4.02434 3.32105 3.37939 3.40074 3.44239 3.65462 4.24760 4.43566 4.57362 4.66210 4.91103 4.96074 5.03147 5.13523 5.24800 5.25669 5.31861 5.36160 5.44337 5.55435 5.59121 5.74800 5.79763 5.83072 5.87896 5.90038 5.91566 5.98223 6.06501 6.17324 6.21566 6.25582 6.31552 6.44275 6.73622 6.97282 7.10864 7.34722 7.45919 7.66573 8.36350 8.52692 8.98889 9.14329 9.56554 11.09132 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027851 B = 0.005190 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.093930 B = 5393.855799 C = 5620.842044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.602 5.602 3 C 0.217 3.783 4 C -0.525 4.525 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.899 5.899 8 Si 0.876 3.124 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.514 3.486 13 O -0.518 6.518 14 C 0.066 3.934 15 H 0.062 0.938 16 C -0.120 4.120 17 C -0.115 4.115 18 C 0.068 3.932 19 H 0.051 0.949 20 C -0.105 4.105 21 C -0.118 4.118 22 C -0.113 4.113 23 C 0.067 3.933 24 N -0.512 5.512 25 H 0.041 0.959 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.028 0.972 29 H 0.035 0.965 30 H 0.264 0.736 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.026 0.974 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.463 -17.263 6.949 20.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.335 5.335 3 C 0.097 3.903 4 C -0.564 4.564 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.537 5.537 8 Si 0.703 3.297 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.299 3.701 13 O -0.393 6.393 14 C -0.046 4.046 15 H 0.080 0.920 16 C -0.158 4.158 17 C -0.153 4.153 18 C -0.040 4.040 19 H 0.069 0.931 20 C -0.143 4.143 21 C -0.155 4.155 22 C -0.151 4.151 23 C -0.061 4.061 24 N -0.237 5.237 25 H 0.059 0.941 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.044 0.956 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.260 -16.918 6.649 19.225 hybrid contribution -0.455 0.578 1.119 1.340 sum -6.715 -16.339 7.769 19.298 Atomic orbital electron populations 1.21849 0.81372 1.03400 1.00340 1.47799 1.06067 1.06955 1.72683 1.19622 0.92362 0.80069 0.98285 1.21337 1.36745 1.06982 0.91312 0.90786 1.24854 0.95291 0.97374 0.95523 1.69900 1.41619 1.23592 1.18630 0.86851 0.80131 0.79708 0.82989 1.19939 1.21118 1.19137 1.20137 0.88114 0.84345 0.77501 1.90653 1.13634 1.86746 1.48275 1.21948 0.92595 0.91342 0.98686 0.91990 1.22689 0.98231 0.99407 0.95489 1.22403 1.00479 0.95083 0.97325 1.22579 0.94511 0.92016 0.94897 0.93118 1.21494 0.98303 0.97169 0.97285 1.21543 1.00069 0.97605 0.96312 1.21568 0.98891 0.95304 0.99337 1.21899 0.96887 0.97599 0.89746 1.62194 1.38658 1.04261 1.18557 0.94075 0.90663 0.91488 0.95406 0.94732 0.92634 0.90703 0.89611 0.91020 0.90164 0.91777 0.90475 0.92057 0.92782 0.90775 0.91978 0.95595 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.17 10.04 59.85 0.60 1.77 16 2 N -0.60 -12.77 2.86 -182.96 -0.52 -13.30 16 3 C 0.22 5.47 4.23 -5.19 -0.02 5.45 16 4 C -0.53 -15.38 9.94 -34.44 -0.34 -15.72 16 5 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 7 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 8 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 9 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 12 C 0.51 10.97 6.90 -10.99 -0.08 10.89 16 13 O -0.52 -13.45 16.05 5.55 0.09 -13.36 16 14 C 0.07 1.06 2.23 -68.23 -0.15 0.91 16 15 H 0.06 0.87 7.98 -51.93 -0.41 0.46 16 16 C -0.12 -1.64 4.65 -24.55 -0.11 -1.75 16 17 C -0.11 -1.40 6.61 -25.02 -0.17 -1.57 16 18 C 0.07 0.83 2.63 -66.58 -0.18 0.65 16 19 H 0.05 0.57 8.06 -51.93 -0.42 0.15 16 20 C -0.10 -1.16 5.67 -26.77 -0.15 -1.31 16 21 C -0.12 -1.20 5.93 -26.54 -0.16 -1.36 16 22 C -0.11 -1.35 6.07 -26.49 -0.16 -1.51 16 23 C 0.07 0.92 5.85 -4.23 -0.02 0.89 16 24 N -0.51 -7.92 3.79 -218.53 -0.83 -8.75 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 1.22 8.07 -51.93 -0.42 0.81 16 27 H 0.07 0.89 4.21 -51.93 -0.22 0.67 16 28 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 29 H 0.03 0.93 6.85 -51.93 -0.36 0.58 16 30 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 31 H 0.07 0.80 7.46 -51.93 -0.39 0.41 16 32 H 0.09 1.39 7.35 -51.93 -0.38 1.01 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.03 0.32 8.05 -51.93 -0.42 -0.10 16 42 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 324.01 15.07 4.88 4.88 Total: -1.00 -34.55 324.01 -8.51 -43.06 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -7.20 Total: -1.91 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -1.04 Total: -0.61 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.58 Total: -49.39 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.09 Total: -13.36 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.55 -8.51 -43.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900357396.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.867 kcal (2) G-P(sol) polarization free energy of solvation -34.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds