Wall clock time and date at job start Mon Mar 30 2020 04:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46497 * 119.99971 * 2 1 4 4 C 1.50703 * 109.47464 * 269.99944 * 3 2 1 5 5 H 1.08000 * 119.99325 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00245 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99906 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 119.99893 * 359.97438 * 6 4 3 9 9 H 1.48503 * 109.46759 * 90.00297 * 8 6 4 10 10 H 1.48496 * 109.47127 * 209.99865 * 8 6 4 11 11 H 1.48493 * 109.47223 * 330.00331 * 8 6 4 12 12 C 1.34778 * 119.99824 * 179.97438 * 2 1 3 13 13 O 1.21284 * 119.99910 * 179.97438 * 12 2 1 14 14 C 1.50697 * 120.00201 * 0.02562 * 12 2 1 15 15 H 1.09002 * 110.18723 * 301.73145 * 14 12 2 16 16 C 1.54804 * 110.15358 * 63.46594 * 14 12 2 17 17 C 1.55322 * 104.99218 * 122.76950 * 16 14 12 18 18 C 1.53929 * 102.08647 * 22.19402 * 17 16 14 19 19 H 1.09000 * 110.99967 * 78.67168 * 18 17 16 20 20 C 1.52364 * 113.26502 * 204.92314 * 18 17 16 21 21 C 1.53547 * 107.58293 * 174.91870 * 20 18 17 22 22 C 1.52823 * 110.65997 * 303.57136 * 21 20 18 23 23 C 1.53642 * 110.60758 * 53.88446 * 22 21 20 24 24 N 1.45528 * 107.86090 * 302.88537 * 23 22 21 25 25 H 1.08999 * 109.47416 * 270.00220 * 1 2 3 26 26 H 1.09000 * 109.47090 * 29.99659 * 1 2 3 27 27 H 1.08998 * 109.47186 * 149.99687 * 1 2 3 28 28 H 1.09003 * 109.47435 * 30.00418 * 3 2 1 29 29 H 1.09001 * 109.47120 * 149.99826 * 3 2 1 30 30 H 0.97001 * 119.99462 * 180.02562 * 7 6 4 31 31 H 1.08997 * 110.33356 * 241.65120 * 16 14 12 32 32 H 1.08997 * 110.33469 * 3.88835 * 16 14 12 33 33 H 1.09001 * 110.91077 * 140.39416 * 17 16 14 34 34 H 1.09004 * 110.90970 * 263.96512 * 17 16 14 35 35 H 1.09005 * 109.83698 * 294.45196 * 20 18 17 36 36 H 1.09001 * 109.83194 * 55.33272 * 20 18 17 37 37 H 1.09005 * 109.19988 * 183.27987 * 21 20 18 38 38 H 1.09001 * 109.24939 * 63.89543 * 21 20 18 39 39 H 1.09002 * 109.24333 * 293.60493 * 22 21 20 40 40 H 1.09001 * 109.24360 * 174.16102 * 22 21 20 41 41 H 1.08999 * 109.78120 * 62.48191 * 23 22 21 42 42 H 1.08997 * 109.77842 * 183.29519 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2416 6 6 3.1269 2.8775 -1.6727 7 7 3.3457 3.2574 -2.9126 8 14 3.7338 3.9287 -0.2528 9 1 5.1069 3.5068 0.1237 10 1 3.7498 5.3553 -0.6647 11 1 2.8273 3.7596 0.9111 12 6 2.1388 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3854 -2.4723 0.0005 15 1 0.7310 -2.5288 0.8704 16 6 0.5569 -2.6099 -1.3000 17 6 1.0466 -3.9327 -1.9502 18 6 1.6387 -4.6846 -0.7446 19 1 0.8517 -5.1385 -0.1424 20 6 2.7006 -5.7054 -1.1343 21 6 3.2892 -6.2804 0.1620 22 6 3.8404 -5.1626 1.0463 23 6 2.7677 -4.0912 1.2952 24 7 2.3229 -3.5958 0.0011 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5139 28 1 1.6084 2.0284 0.5139 29 1 3.1499 1.1384 0.5139 30 1 3.8232 4.0829 -3.0898 31 1 -0.5060 -2.6730 -1.0670 32 1 0.7508 -1.7672 -1.9635 33 1 0.2126 -4.4858 -2.3823 34 1 1.8119 -3.7370 -2.7013 35 1 2.2479 -6.5043 -1.7216 36 1 3.4853 -5.2195 -1.7144 37 1 4.0940 -6.9726 -0.0858 38 1 2.5097 -6.8160 0.7040 39 1 4.6981 -4.7046 0.5536 40 1 4.1568 -5.5827 2.0011 41 1 1.9261 -4.5294 1.8316 42 1 3.1915 -3.2731 1.8776 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900357396.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:18 Heat of formation + Delta-G solvation = -48.567042 kcal Electronic energy + Delta-G solvation = -21482.314939 eV Core-core repulsion = 18461.223896 eV Total energy + Delta-G solvation = -3021.091043 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.57726 -39.74095 -36.60174 -35.95397 -34.64564 -33.18903 -31.20457 -29.83691 -28.53957 -27.33116 -24.88202 -23.92180 -22.72075 -22.11504 -20.69947 -19.96848 -19.14598 -17.75232 -17.36225 -16.97019 -16.42109 -15.88687 -15.76496 -15.31871 -15.02736 -14.68592 -14.53900 -14.32689 -13.99236 -13.81696 -13.74240 -13.55885 -13.31680 -13.08491 -12.93189 -12.47606 -12.40849 -12.28188 -12.03913 -12.02151 -11.75654 -11.66497 -11.55745 -11.25838 -11.21280 -10.84486 -10.53494 -9.36469 -9.15958 -8.35190 -6.39900 1.30154 1.34935 1.43239 1.83607 2.23659 2.29685 2.98975 3.04307 3.49448 3.61723 3.85197 3.95055 4.04240 4.11009 4.17442 4.28813 4.39048 4.43747 4.48847 4.61400 4.64199 4.70863 4.79177 4.81142 4.91064 4.92497 4.94151 4.99763 5.02423 5.08543 5.13226 5.22718 5.28972 5.35246 5.44955 5.53114 5.64067 6.06555 6.24295 6.31364 6.60923 6.76491 7.21298 7.50690 8.82022 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027851 B = 0.005190 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.093930 B = 5393.855799 C = 5620.842044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.610 5.610 3 C 0.225 3.775 4 C -0.534 4.534 5 H 0.027 0.973 6 C 0.010 3.990 7 N -0.946 5.946 8 Si 0.949 3.051 9 H -0.279 1.279 10 H -0.272 1.272 11 H -0.238 1.238 12 C 0.501 3.499 13 O -0.581 6.581 14 C 0.076 3.924 15 H 0.092 0.908 16 C -0.117 4.117 17 C -0.113 4.113 18 C 0.072 3.928 19 H 0.079 0.921 20 C -0.105 4.105 21 C -0.112 4.112 22 C -0.112 4.112 23 C 0.067 3.933 24 N -0.547 5.547 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.050 0.950 29 H 0.013 0.987 30 H 0.268 0.732 31 H 0.118 0.882 32 H 0.049 0.951 33 H 0.108 0.892 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.041 0.959 40 H 0.081 0.919 41 H 0.053 0.947 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.892 -19.057 9.007 23.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.342 5.342 3 C 0.103 3.897 4 C -0.572 4.572 5 H 0.045 0.955 6 C -0.187 4.187 7 N -0.586 5.586 8 Si 0.772 3.228 9 H -0.205 1.205 10 H -0.197 1.197 11 H -0.161 1.161 12 C 0.289 3.711 13 O -0.460 6.460 14 C -0.036 4.036 15 H 0.110 0.890 16 C -0.156 4.156 17 C -0.151 4.151 18 C -0.034 4.034 19 H 0.097 0.903 20 C -0.143 4.143 21 C -0.150 4.150 22 C -0.150 4.150 23 C -0.061 4.061 24 N -0.273 5.273 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.112 0.888 28 H 0.068 0.932 29 H 0.031 0.969 30 H 0.077 0.923 31 H 0.136 0.864 32 H 0.068 0.932 33 H 0.126 0.874 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.060 0.940 40 H 0.100 0.900 41 H 0.071 0.929 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.753 -18.735 8.711 22.439 hybrid contribution 0.312 1.094 0.382 1.200 sum -8.441 -17.641 9.093 21.568 Atomic orbital electron populations 1.22159 0.77878 1.04418 1.02880 1.47932 1.08351 1.05744 1.72189 1.19291 0.92522 0.82630 0.95291 1.21546 1.36740 1.06613 0.92333 0.95495 1.25857 0.95275 0.98954 0.98648 1.70052 1.42745 1.24529 1.21256 0.85703 0.79434 0.77835 0.79876 1.20454 1.19698 1.16150 1.21329 0.87890 0.86182 0.75700 1.90608 1.16531 1.87807 1.51033 1.21886 0.92375 0.88401 1.00976 0.89002 1.22726 1.00294 0.98824 0.93708 1.22433 1.00964 0.94798 0.96882 1.22701 0.95121 0.91176 0.94426 0.90320 1.21518 0.97461 0.97524 0.97818 1.21520 1.01010 0.96898 0.95526 1.21572 0.97396 0.95492 1.00525 1.21902 0.98006 0.97054 0.89106 1.62114 1.39841 1.05440 1.19910 0.90531 0.91533 0.88754 0.93199 0.96903 0.92263 0.86350 0.93193 0.87351 0.93013 0.89060 0.93517 0.91012 0.90471 0.94029 0.90018 0.92938 0.93662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.03 10.04 127.77 1.28 3.31 16 2 N -0.61 -26.05 2.86 -851.14 -2.43 -28.48 16 3 C 0.23 11.51 4.23 85.63 0.36 11.87 16 4 C -0.53 -32.60 9.94 25.60 0.25 -32.35 16 5 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 6 C 0.01 0.64 5.47 84.65 0.46 1.10 16 7 N -0.95 -61.31 13.96 21.45 0.30 -61.01 16 8 Si 0.95 45.90 27.47 68.60 1.88 47.79 16 9 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.24 -10.36 6.54 99.48 0.65 -9.71 16 12 C 0.50 21.89 6.90 87.66 0.61 22.50 16 13 O -0.58 -31.87 16.05 -3.04 -0.05 -31.92 16 14 C 0.08 2.31 2.23 44.89 0.10 2.41 16 15 H 0.09 2.26 7.98 -2.39 -0.02 2.24 16 16 C -0.12 -2.97 4.65 32.01 0.15 -2.82 16 17 C -0.11 -2.52 6.61 31.71 0.21 -2.31 16 18 C 0.07 1.57 2.63 44.68 0.12 1.69 16 19 H 0.08 1.33 8.06 -2.39 -0.02 1.31 16 20 C -0.11 -2.11 5.67 30.57 0.17 -1.94 16 21 C -0.11 -1.98 5.93 30.72 0.18 -1.80 16 22 C -0.11 -2.57 6.07 30.75 0.19 -2.38 16 23 C 0.07 1.78 5.85 86.78 0.51 2.28 16 24 N -0.55 -16.50 3.79 -845.30 -3.21 -19.70 16 25 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 27 H 0.09 2.24 4.21 -2.39 -0.01 2.23 16 28 H 0.05 2.32 7.13 -2.39 -0.02 2.30 16 29 H 0.01 0.71 6.85 -2.39 -0.02 0.70 16 30 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 31 H 0.12 1.96 7.46 -2.39 -0.02 1.94 16 32 H 0.05 1.63 7.35 -2.39 -0.02 1.61 16 33 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.05 1.43 8.10 -2.39 -0.02 1.42 16 35 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.05 1.10 8.05 -2.39 -0.02 1.08 16 42 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -82.02 324.01 2.01 -80.01 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.92 Total: 11.76 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 4.59 Total: 1.56 kcal Atomic # 7 Polarization: -103.85 SS G_CDS: -5.34 Total: -109.19 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.05 Total: -31.92 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.88 Total: 47.79 kcal Total: -82.02 2.01 -80.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900357396.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.443 kcal (2) G-P(sol) polarization free energy of solvation -82.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds