Wall clock time and date at job start Mon Mar 30 2020 04:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 N 1.28605 * 124.61466 * 90.02384 * 3 2 1 5 5 C 1.31383 * 108.71213 * 180.02562 * 4 3 2 6 6 C 1.50701 * 127.04434 * 179.97438 * 5 4 3 7 7 C 1.39675 * 105.90420 * 0.02562 * 5 4 3 8 8 C 1.50700 * 127.05028 * 180.02562 * 7 5 4 9 9 H 1.08995 * 109.47182 * 345.00224 * 8 7 5 10 10 C 1.53005 * 109.47143 * 104.99741 * 8 7 5 11 11 N 1.46894 * 109.47151 * 224.99700 * 8 7 5 12 12 C 1.46898 * 111.00088 * 155.00011 * 11 8 7 13 13 C 1.52998 * 109.47216 * 180.02562 * 12 11 8 14 14 C 1.52999 * 109.47161 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47045 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00390 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99794 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00013 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00210 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47208 * 89.99647 * 19 17 15 21 21 H 1.48505 * 109.47333 * 209.99676 * 19 17 15 22 22 H 1.48505 * 109.46914 * 329.99635 * 19 17 15 23 23 N 1.28598 * 124.62129 * 269.72856 * 3 2 1 24 24 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 29 29 H 1.09001 * 109.46784 * 89.97734 * 6 5 4 30 30 H 1.08999 * 109.46948 * 209.97465 * 6 5 4 31 31 H 1.08998 * 109.47254 * 329.97907 * 6 5 4 32 32 H 1.09003 * 109.46999 * 59.99621 * 10 8 7 33 33 H 1.08996 * 109.47196 * 179.97438 * 10 8 7 34 34 H 1.08999 * 109.47012 * 300.00502 * 10 8 7 35 35 H 1.00903 * 111.00292 * 278.95535 * 11 8 7 36 36 H 1.09000 * 109.47303 * 300.00163 * 12 11 8 37 37 H 1.08993 * 109.46979 * 59.99937 * 12 11 8 38 38 H 1.09002 * 109.47411 * 299.99902 * 13 12 11 39 39 H 1.09002 * 109.47465 * 59.99748 * 13 12 11 40 40 H 1.08998 * 109.46922 * 299.99410 * 14 13 12 41 41 H 1.08993 * 109.47156 * 59.99692 * 14 13 12 42 42 H 0.97003 * 120.00029 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2624 2.0698 1.0584 5 6 2.6830 3.2613 0.6984 6 6 3.0836 4.3953 1.6065 7 6 2.6815 3.2618 -0.6983 8 6 3.0818 4.3960 -1.6063 9 1 3.1279 5.3217 -1.0327 10 6 4.4555 4.1032 -2.2130 11 7 2.0911 4.5353 -2.6819 12 6 2.0789 5.9051 -3.2123 13 6 1.0367 6.0109 -4.3274 14 6 1.0245 7.4374 -4.8804 15 6 -0.0025 7.5418 -5.9783 16 1 -0.5877 6.6771 -6.2545 17 6 -0.1951 8.7413 -6.6303 18 7 -1.0910 8.8323 -7.5888 19 14 0.8174 10.2368 -6.1532 20 1 2.0570 10.2764 -6.9699 21 1 0.0251 11.4691 -6.3962 22 1 1.1750 10.1539 -4.7143 23 7 2.2667 2.0683 -1.0583 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 4.1491 4.3263 1.8254 30 1 2.8744 5.3455 1.1150 31 1 2.5170 4.3343 2.5356 32 1 4.4095 3.1774 -2.7866 33 1 4.7448 4.9233 -2.8701 34 1 5.1907 3.9998 -1.4149 35 1 2.2584 3.8644 -3.4168 36 1 1.8272 6.6021 -2.4130 37 1 3.0637 6.1492 -3.6105 38 1 1.2879 5.3139 -5.1270 39 1 0.0520 5.7669 -3.9289 40 1 0.7733 8.1347 -4.0811 41 1 2.0092 7.6810 -5.2790 42 1 -1.2262 9.6761 -8.0478 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924940822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:31 Heat of formation + Delta-G solvation = 84.883674 kcal Electronic energy + Delta-G solvation = -19898.712387 eV Core-core repulsion = 16915.700953 eV Total energy + Delta-G solvation = -2983.011434 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.55102 -37.42953 -35.24095 -33.94126 -32.76332 -32.16020 -30.94711 -29.30149 -27.93463 -26.22195 -24.71456 -22.86975 -22.08490 -21.18636 -20.35492 -19.82966 -17.38131 -16.73390 -16.55714 -15.38384 -15.03901 -14.77909 -14.55525 -14.07713 -14.01537 -13.63912 -13.41258 -13.13545 -12.87702 -12.70028 -12.55786 -12.39714 -12.20192 -11.93305 -11.72423 -11.62967 -11.31742 -11.08326 -10.90124 -10.74466 -10.70768 -10.07870 -9.90354 -9.69647 -9.54831 -9.13308 -8.97573 -8.49612 -8.17713 -5.99902 -3.97425 1.81975 2.23348 2.39332 3.33329 3.40589 3.44578 3.96858 4.28246 4.48938 4.55558 4.56779 4.78335 4.81112 4.88762 5.06617 5.16966 5.24040 5.34014 5.34311 5.43514 5.48053 5.55270 5.64948 5.72996 5.77071 5.79243 5.87387 6.01199 6.16992 6.22516 6.28633 6.60870 6.63474 6.72289 6.96469 7.25849 7.40888 7.49048 7.63491 7.84985 8.38512 8.59837 9.06047 9.62755 11.13775 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.026009 B = 0.003409 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.284982 B = 8210.493280 C = 8767.975281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.140 3.860 3 N -0.162 5.162 4 N -0.295 5.295 5 C 0.001 3.999 6 C -0.063 4.063 7 C 0.026 3.974 8 C 0.172 3.828 9 H 0.096 0.904 10 C -0.176 4.176 11 N -0.680 5.680 12 C 0.057 3.943 13 C -0.099 4.099 14 C -0.012 4.012 15 C -0.518 4.518 16 H 0.071 0.929 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.881 3.119 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.265 1.265 23 N -0.271 5.271 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.345 0.655 36 H 0.067 0.933 37 H 0.027 0.973 38 H 0.051 0.949 39 H 0.061 0.939 40 H 0.016 0.984 41 H 0.009 0.991 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.398 -15.288 18.554 26.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.021 3.979 3 N -0.062 5.062 4 N -0.137 5.137 5 C -0.162 4.162 6 C -0.122 4.122 7 C -0.138 4.138 8 C 0.059 3.941 9 H 0.114 0.886 10 C -0.236 4.236 11 N -0.311 5.311 12 C -0.071 4.071 13 C -0.137 4.137 14 C -0.050 4.050 15 C -0.556 4.556 16 H 0.089 0.911 17 C -0.137 4.137 18 N -0.545 5.545 19 Si 0.708 3.292 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.190 1.190 23 N -0.112 5.112 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.102 0.898 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.164 0.836 36 H 0.086 0.914 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.034 0.966 41 H 0.027 0.973 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.309 -16.406 18.855 26.671 hybrid contribution 1.470 1.566 -0.421 2.189 sum 10.780 -14.840 18.434 26.004 Atomic orbital electron populations 1.22181 0.93210 1.03627 1.03917 1.21881 0.96024 0.74739 1.05279 1.47952 1.45651 1.13243 0.99392 1.73908 1.18242 1.05385 1.16181 1.23002 1.05065 0.94394 0.93771 1.20049 1.01516 0.93145 0.97493 1.22938 1.04038 0.93748 0.93054 1.19714 0.89643 0.93075 0.91638 0.88607 1.22470 0.97294 1.02431 1.01406 1.60474 1.49873 1.06590 1.14144 1.22197 0.98517 0.88320 0.98094 1.21435 0.97716 0.99347 0.95226 1.19539 0.96743 0.92422 0.96326 1.21167 1.19881 0.97754 1.16800 0.91063 1.25051 0.95090 0.98816 0.94702 1.69924 1.34340 1.26144 1.24077 0.86760 0.80332 0.82490 0.79580 1.20389 1.21455 1.18973 1.73975 1.16629 1.05274 1.15302 0.91098 0.91556 0.89824 0.87855 0.87632 0.90705 0.90166 0.90801 0.92087 0.91598 0.92165 0.83612 0.91417 0.95519 0.93038 0.92005 0.96613 0.97260 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 10.24 37.16 0.38 -0.88 16 2 C 0.14 1.12 7.26 -4.04 -0.03 1.09 16 3 N -0.16 -2.03 3.95 -10.62 -0.04 -2.07 16 4 N -0.29 -3.91 12.05 33.72 0.41 -3.50 16 5 C 0.00 0.01 7.35 -82.25 -0.60 -0.59 16 6 C -0.06 -0.56 10.29 36.01 0.37 -0.19 16 7 C 0.03 0.36 6.19 -82.25 -0.51 -0.15 16 8 C 0.17 2.15 3.03 -68.86 -0.21 1.94 16 9 H 0.10 1.10 6.85 -51.93 -0.36 0.74 16 10 C -0.18 -1.91 9.14 37.16 0.34 -1.57 16 11 N -0.68 -10.09 6.23 -107.96 -0.67 -10.76 16 12 C 0.06 0.93 5.48 -3.83 -0.02 0.91 16 13 C -0.10 -2.01 5.41 -26.73 -0.14 -2.15 16 14 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 15 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 16 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 17 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 18 N -0.91 -28.44 13.96 55.43 0.77 -27.67 16 19 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 23 N -0.27 -3.83 12.05 33.71 0.41 -3.43 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.64 7.32 -51.93 -0.38 0.26 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 33 H 0.07 0.70 7.45 -51.93 -0.39 0.31 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.35 5.08 8.47 -39.29 -0.33 4.74 16 36 H 0.07 1.08 8.06 -51.93 -0.42 0.67 16 37 H 0.03 0.41 7.43 -51.93 -0.39 0.02 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 41 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 42 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 346.24 15.07 5.22 5.22 Total: -1.00 -34.03 346.24 -6.81 -40.85 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -7.26 Total: -0.31 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -0.97 Total: -15.65 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.87 Total: -47.42 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.03 -6.81 -40.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924940822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.730 kcal (2) G-P(sol) polarization free energy of solvation -34.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds