Wall clock time and date at job start Mon Mar 30 2020 04:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 N 1.28605 * 124.61466 * 90.02384 * 3 2 1 5 5 C 1.31383 * 108.71213 * 180.02562 * 4 3 2 6 6 C 1.50701 * 127.04434 * 179.97438 * 5 4 3 7 7 C 1.39675 * 105.90420 * 0.02562 * 5 4 3 8 8 C 1.50700 * 127.05028 * 180.02562 * 7 5 4 9 9 H 1.08995 * 109.47182 * 345.00224 * 8 7 5 10 10 C 1.53005 * 109.47143 * 104.99741 * 8 7 5 11 11 N 1.46894 * 109.47151 * 224.99700 * 8 7 5 12 12 C 1.46898 * 111.00088 * 155.00011 * 11 8 7 13 13 C 1.52998 * 109.47216 * 180.02562 * 12 11 8 14 14 C 1.52999 * 109.47161 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47045 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00390 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99794 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00013 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00210 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47208 * 89.99647 * 19 17 15 21 21 H 1.48505 * 109.47333 * 209.99676 * 19 17 15 22 22 H 1.48505 * 109.46914 * 329.99635 * 19 17 15 23 23 N 1.28598 * 124.62129 * 269.72856 * 3 2 1 24 24 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 29 29 H 1.09001 * 109.46784 * 89.97734 * 6 5 4 30 30 H 1.08999 * 109.46948 * 209.97465 * 6 5 4 31 31 H 1.08998 * 109.47254 * 329.97907 * 6 5 4 32 32 H 1.09003 * 109.46999 * 59.99621 * 10 8 7 33 33 H 1.08996 * 109.47196 * 179.97438 * 10 8 7 34 34 H 1.08999 * 109.47012 * 300.00502 * 10 8 7 35 35 H 1.00903 * 111.00292 * 278.95535 * 11 8 7 36 36 H 1.09000 * 109.47303 * 300.00163 * 12 11 8 37 37 H 1.08993 * 109.46979 * 59.99937 * 12 11 8 38 38 H 1.09002 * 109.47411 * 299.99902 * 13 12 11 39 39 H 1.09002 * 109.47465 * 59.99748 * 13 12 11 40 40 H 1.08998 * 109.46922 * 299.99410 * 14 13 12 41 41 H 1.08993 * 109.47156 * 59.99692 * 14 13 12 42 42 H 0.97003 * 120.00029 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2624 2.0698 1.0584 5 6 2.6830 3.2613 0.6984 6 6 3.0836 4.3953 1.6065 7 6 2.6815 3.2618 -0.6983 8 6 3.0818 4.3960 -1.6063 9 1 3.1279 5.3217 -1.0327 10 6 4.4555 4.1032 -2.2130 11 7 2.0911 4.5353 -2.6819 12 6 2.0789 5.9051 -3.2123 13 6 1.0367 6.0109 -4.3274 14 6 1.0245 7.4374 -4.8804 15 6 -0.0025 7.5418 -5.9783 16 1 -0.5877 6.6771 -6.2545 17 6 -0.1951 8.7413 -6.6303 18 7 -1.0910 8.8323 -7.5888 19 14 0.8174 10.2368 -6.1532 20 1 2.0570 10.2764 -6.9699 21 1 0.0251 11.4691 -6.3962 22 1 1.1750 10.1539 -4.7143 23 7 2.2667 2.0683 -1.0583 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 4.1491 4.3263 1.8254 30 1 2.8744 5.3455 1.1150 31 1 2.5170 4.3343 2.5356 32 1 4.4095 3.1774 -2.7866 33 1 4.7448 4.9233 -2.8701 34 1 5.1907 3.9998 -1.4149 35 1 2.2584 3.8644 -3.4168 36 1 1.8272 6.6021 -2.4130 37 1 3.0637 6.1492 -3.6105 38 1 1.2879 5.3139 -5.1270 39 1 0.0520 5.7669 -3.9289 40 1 0.7733 8.1347 -4.0811 41 1 2.0092 7.6810 -5.2790 42 1 -1.2262 9.6761 -8.0478 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924940822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:31 Heat of formation + Delta-G solvation = 60.745191 kcal Electronic energy + Delta-G solvation = -19899.759110 eV Core-core repulsion = 16915.700953 eV Total energy + Delta-G solvation = -2984.058157 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.46718 -38.54762 -36.28241 -35.48395 -34.05718 -33.50791 -32.11897 -30.54079 -28.68335 -27.85846 -25.66121 -24.03808 -23.33643 -22.22024 -21.74508 -21.04757 -18.91093 -18.17344 -17.53324 -16.62907 -16.33727 -16.07689 -15.70121 -15.36009 -14.88579 -14.74182 -14.66808 -14.25411 -13.97622 -13.74413 -13.61981 -13.49537 -13.23468 -13.04248 -12.95448 -12.69896 -12.41766 -12.38692 -12.17140 -12.07696 -11.78057 -11.67666 -11.47862 -11.44611 -11.24648 -10.99726 -10.74220 -9.87236 -9.29844 -8.27442 -6.32078 0.88764 1.38261 1.41056 1.44698 1.49495 1.53473 2.39086 3.07942 3.16078 3.19623 3.80199 3.94329 3.97597 4.05533 4.16811 4.24110 4.27011 4.32522 4.43558 4.63248 4.68519 4.69667 4.72289 4.79693 4.83569 4.86530 5.00672 5.03335 5.06921 5.10874 5.15236 5.19729 5.31584 5.44556 5.55334 5.64605 5.69030 5.87815 6.14899 6.31936 6.46091 6.76621 7.32509 7.44926 8.89853 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.026009 B = 0.003409 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.284982 B = 8210.493280 C = 8767.975281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.128 3.872 3 N -0.164 5.164 4 N -0.311 5.311 5 C -0.008 4.008 6 C -0.063 4.063 7 C 0.009 3.991 8 C 0.174 3.826 9 H 0.111 0.889 10 C -0.168 4.168 11 N -0.691 5.691 12 C 0.072 3.928 13 C -0.091 4.091 14 C -0.008 4.008 15 C -0.535 4.535 16 H 0.025 0.975 17 C -0.002 4.002 18 N -0.956 5.956 19 Si 0.957 3.043 20 H -0.265 1.265 21 H -0.286 1.286 22 H -0.241 1.241 23 N -0.294 5.294 24 H 0.046 0.954 25 H 0.053 0.947 26 H 0.114 0.886 27 H 0.125 0.875 28 H 0.119 0.881 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.343 0.657 36 H 0.075 0.925 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.041 0.959 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.619 -14.658 20.483 28.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.010 3.990 3 N -0.066 5.066 4 N -0.154 5.154 5 C -0.171 4.171 6 C -0.121 4.121 7 C -0.154 4.154 8 C 0.062 3.938 9 H 0.128 0.872 10 C -0.228 4.228 11 N -0.322 5.322 12 C -0.056 4.056 13 C -0.129 4.129 14 C -0.046 4.046 15 C -0.573 4.573 16 H 0.043 0.957 17 C -0.198 4.198 18 N -0.597 5.597 19 Si 0.780 3.220 20 H -0.190 1.190 21 H -0.211 1.211 22 H -0.164 1.164 23 N -0.136 5.136 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.133 0.867 27 H 0.143 0.857 28 H 0.137 0.863 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.162 0.838 36 H 0.094 0.906 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.538 -15.804 20.803 28.560 hybrid contribution 0.676 1.222 -1.048 1.746 sum 12.214 -14.582 19.755 27.424 Atomic orbital electron populations 1.22133 0.92902 1.05072 1.02036 1.22300 0.96269 0.73312 1.07073 1.48417 1.45115 1.14181 0.98841 1.73892 1.18857 1.05963 1.16663 1.23584 1.04473 0.95005 0.94002 1.20197 1.02689 0.92200 0.97042 1.23171 1.04585 0.93895 0.93756 1.19805 0.89684 0.93511 0.90824 0.87160 1.22381 0.96587 1.02096 1.01696 1.60384 1.51551 1.05722 1.14574 1.21934 0.97586 0.89387 0.96737 1.21262 0.98334 0.96907 0.96444 1.19477 0.95472 0.94883 0.94794 1.21550 1.20725 0.96532 1.18516 0.95667 1.26130 0.96440 1.02758 0.94433 1.70094 1.36496 1.27387 1.25684 0.85556 0.78554 0.77295 0.80613 1.18969 1.21143 1.16446 1.73923 1.17322 1.06002 1.16363 0.93452 0.92763 0.86733 0.85651 0.86274 0.88868 0.89161 0.90361 0.93064 0.91043 0.90736 0.83821 0.90645 0.93904 0.93802 0.93972 0.95911 0.95891 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 10.24 71.98 0.74 -1.56 16 2 C 0.13 1.91 7.26 86.38 0.63 2.53 16 3 N -0.16 -3.99 3.95 -187.51 -0.74 -4.73 16 4 N -0.31 -7.94 12.05 -47.25 -0.57 -8.51 16 5 C -0.01 -0.18 7.35 42.97 0.32 0.13 16 6 C -0.06 -0.97 10.29 71.24 0.73 -0.24 16 7 C 0.01 0.24 6.19 42.97 0.27 0.51 16 8 C 0.17 4.00 3.03 44.17 0.13 4.13 16 9 H 0.11 2.20 6.85 -2.39 -0.02 2.18 16 10 C -0.17 -3.26 9.14 71.98 0.66 -2.60 16 11 N -0.69 -19.62 6.23 -495.48 -3.09 -22.71 16 12 C 0.07 2.19 5.48 86.30 0.47 2.66 16 13 C -0.09 -3.67 5.41 30.59 0.17 -3.50 16 14 C -0.01 -0.39 4.04 29.85 0.12 -0.27 16 15 C -0.54 -31.88 9.66 25.60 0.25 -31.64 16 16 H 0.02 1.66 7.99 -2.91 -0.02 1.64 16 17 C 0.00 -0.09 5.47 84.65 0.46 0.37 16 18 N -0.96 -61.47 13.96 21.45 0.30 -61.17 16 19 Si 0.96 44.52 27.47 68.60 1.88 46.41 16 20 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 21 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 22 H -0.24 -10.23 6.54 99.48 0.65 -9.58 16 23 N -0.29 -8.18 12.05 -47.25 -0.57 -8.75 16 24 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.09 1.20 7.32 -2.39 -0.02 1.18 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.05 1.09 8.13 -2.39 -0.02 1.07 16 33 H 0.07 1.31 7.45 -2.39 -0.02 1.29 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.34 9.89 8.47 -89.69 -0.76 9.13 16 36 H 0.08 2.19 8.06 -2.39 -0.02 2.17 16 37 H 0.04 1.18 7.43 -2.39 -0.02 1.16 16 38 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.02 1.04 7.20 -2.39 -0.02 1.02 16 41 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 42 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -75.06 346.24 2.33 -72.73 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.17 Total: 16.20 kcal Atomic # 6 Polarization: -34.42 SS G_CDS: 4.94 Total: -29.48 kcal Atomic # 7 Polarization: -101.20 SS G_CDS: -4.67 Total: -105.86 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.41 kcal Total: -75.06 2.33 -72.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924940822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.479 kcal (2) G-P(sol) polarization free energy of solvation -75.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds