Wall clock time and date at job start Mon Mar 30 2020 05:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52989 * 109.47233 * 2 1 4 4 H 1.09008 * 115.55216 * 29.42220 * 3 2 1 5 5 C 1.52996 * 117.50206 * 243.74804 * 3 2 1 6 6 C 1.53008 * 117.49968 * 175.08654 * 3 2 1 7 7 H 1.08995 * 117.49710 * 0.02562 * 6 3 2 8 8 C 1.52998 * 117.49898 * 214.98319 * 6 3 2 9 9 N 1.46903 * 109.47091 * 175.00156 * 8 6 3 10 10 C 1.46892 * 110.99967 * 169.99703 * 9 8 6 11 11 C 1.53241 * 109.34059 * 187.25418 * 10 9 8 12 12 H 1.08998 * 109.62625 * 65.88033 * 11 10 9 13 13 C 1.53003 * 109.63209 * 186.46529 * 11 10 9 14 14 N 1.47087 * 108.51849 * 306.17405 * 11 10 9 15 15 C 1.36942 * 120.87528 * 231.20580 * 14 11 10 16 16 H 1.07996 * 120.00413 * 52.72877 * 15 14 11 17 17 C 1.38810 * 119.99637 * 232.72375 * 15 14 11 18 18 N 1.31620 * 120.00141 * 18.80576 * 17 15 14 19 19 Si 1.86798 * 120.00188 * 198.81237 * 17 15 14 20 20 H 1.48497 * 109.47510 * 89.99520 * 19 17 15 21 21 H 1.48502 * 109.47193 * 210.00280 * 19 17 15 22 22 H 1.48508 * 109.46630 * 329.99911 * 19 17 15 23 23 C 1.47074 * 118.23722 * 51.18334 * 14 11 10 24 24 H 1.08996 * 109.62879 * 68.72331 * 23 14 11 25 25 C 1.53002 * 109.62645 * 189.10793 * 23 14 11 26 26 C 1.46894 * 110.99764 * 294.30182 * 9 8 6 27 27 H 1.09004 * 109.47344 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46690 * 299.99472 * 1 2 3 29 29 H 1.09001 * 109.47283 * 59.99858 * 1 2 3 30 30 H 1.08998 * 109.47134 * 120.00900 * 2 1 3 31 31 H 1.09003 * 109.46857 * 240.00017 * 2 1 3 32 32 H 1.08998 * 117.50130 * 0.02562 * 5 3 2 33 33 H 1.09001 * 117.50090 * 145.00098 * 5 3 2 34 34 H 1.09006 * 109.47104 * 294.99653 * 8 6 3 35 35 H 1.08995 * 109.47141 * 54.99865 * 8 6 3 36 36 H 1.08995 * 109.49837 * 307.21565 * 10 9 8 37 37 H 1.09006 * 109.49589 * 67.29716 * 10 9 8 38 38 H 1.08992 * 109.46896 * 59.99400 * 13 11 10 39 39 H 1.09002 * 109.47073 * 180.02562 * 13 11 10 40 40 H 1.09000 * 109.46606 * 299.99667 * 13 11 10 41 41 H 0.97002 * 120.00379 * 182.67612 * 18 17 15 42 42 H 1.09001 * 109.47721 * 52.01794 * 25 23 14 43 43 H 1.09000 * 109.47025 * 172.02699 * 25 23 14 44 44 H 1.09001 * 109.46777 * 292.02238 * 25 23 14 45 45 H 1.09001 * 109.49531 * 292.70371 * 26 9 8 46 46 H 1.09004 * 109.49625 * 52.78886 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3891 2.1712 0.4831 5 6 2.8415 1.9084 -1.2171 6 6 3.5504 1.6577 0.1162 7 1 4.1807 0.7717 0.1923 8 6 4.0314 2.8797 0.9012 9 7 5.4966 2.8505 1.0033 10 6 6.0124 4.1173 1.5388 11 6 7.5428 4.1159 1.4603 12 1 7.8558 4.1113 0.4163 13 6 8.0946 5.3590 2.1611 14 7 8.0438 2.9069 2.1317 15 6 9.0158 2.9886 3.0929 16 1 8.8909 3.6570 3.9319 17 6 10.1617 2.2120 2.9888 18 7 10.4995 1.6896 1.8289 19 14 11.2242 1.9084 4.4948 20 1 10.7570 0.6830 5.1915 21 1 12.6378 1.7310 4.0757 22 1 11.1226 3.0699 5.4146 23 6 7.4728 1.6082 1.7438 24 1 7.7821 1.3610 0.7283 25 6 7.9597 0.5243 2.7076 26 6 5.9452 1.7085 1.8111 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5140 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.0051 1.1875 -2.0181 33 1 2.7179 2.9437 -1.5348 34 1 3.7213 3.7883 0.3849 35 1 3.5971 2.8636 1.9007 36 1 5.6189 4.9473 0.9520 37 1 5.7016 4.2265 2.5779 38 1 7.7857 5.3540 3.2063 39 1 9.1831 5.3556 2.1033 40 1 7.7080 6.2533 1.6722 41 1 11.2785 1.1153 1.7641 42 1 7.7687 0.8380 3.7338 43 1 7.4278 -0.4058 2.5069 44 1 9.0295 0.3683 2.5685 45 1 5.6353 1.8511 2.8464 46 1 5.5030 0.7914 1.4217 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930829633.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:59 Heat of formation + Delta-G solvation = 41.565967 kcal Electronic energy + Delta-G solvation = -21468.550489 eV Core-core repulsion = 18587.201001 eV Total energy + Delta-G solvation = -2881.349487 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.86589 -37.58428 -34.65867 -32.76622 -32.11356 -31.12780 -27.81403 -26.70487 -25.76783 -24.41322 -23.78392 -21.98396 -20.47808 -20.42991 -19.66561 -19.01677 -16.18199 -15.56709 -15.11355 -14.82070 -14.55396 -14.32953 -14.21237 -13.91703 -13.39351 -13.08996 -12.82654 -12.71284 -12.15653 -11.94351 -11.82846 -11.52395 -11.49272 -11.32209 -11.26407 -11.07659 -10.84619 -10.73486 -10.60284 -10.43773 -10.34215 -10.10152 -9.79680 -9.74965 -9.67535 -9.63828 -9.27736 -8.08330 -7.69633 -6.29628 -5.65793 -3.46953 3.35172 3.43513 3.44768 3.79998 4.35590 4.48332 4.77157 4.89209 4.99975 5.10925 5.25404 5.31071 5.37356 5.40535 5.59181 5.66940 5.73593 5.82553 5.84506 5.92020 5.95315 6.00055 6.03469 6.04115 6.20760 6.24934 6.28344 6.31522 6.38553 6.48741 6.52965 6.55337 6.66072 6.79960 6.89997 7.01738 7.21246 7.28400 7.61681 7.64993 7.79008 7.83051 7.94319 8.67318 9.28344 9.81521 10.60943 11.24242 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.028860 B = 0.004588 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.952167 B = 6101.648532 C = 6681.763723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.156 4.156 4 H 0.099 0.901 5 C -0.170 4.170 6 C -0.135 4.135 7 H 0.109 0.891 8 C 0.086 3.914 9 N -0.531 5.531 10 C 0.050 3.950 11 C 0.172 3.828 12 H 0.032 0.968 13 C -0.129 4.129 14 N -0.580 5.580 15 C -0.260 4.260 16 H 0.051 0.949 17 C 0.035 3.965 18 N -0.874 5.874 19 Si 0.882 3.118 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.276 1.276 23 C 0.200 3.800 24 H 0.035 0.965 25 C -0.142 4.142 26 C 0.043 3.957 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.028 0.972 36 H 0.058 0.942 37 H 0.025 0.975 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.034 0.966 41 H 0.253 0.747 42 H 0.045 0.955 43 H 0.020 0.980 44 H 0.088 0.912 45 H 0.024 0.976 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.074 -0.435 -3.046 15.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.131 4.131 3 C -0.175 4.175 4 H 0.117 0.883 5 C -0.207 4.207 6 C -0.154 4.154 7 H 0.127 0.873 8 C -0.042 4.042 9 N -0.255 5.255 10 C -0.080 4.080 11 C 0.066 3.934 12 H 0.049 0.951 13 C -0.187 4.187 14 N -0.304 5.304 15 C -0.390 4.390 16 H 0.068 0.932 17 C -0.167 4.167 18 N -0.514 5.514 19 Si 0.710 3.290 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.201 1.201 23 C 0.093 3.907 24 H 0.053 0.947 25 C -0.200 4.200 26 C -0.086 4.086 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.043 0.957 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.039 0.961 44 H 0.106 0.894 45 H 0.042 0.958 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.695 -0.550 -3.583 15.136 hybrid contribution 0.216 -0.179 1.510 1.535 sum -14.480 -0.729 -2.073 14.646 Atomic orbital electron populations 1.21741 0.95755 1.01313 1.01719 1.21103 0.95628 0.94433 1.01949 1.22474 0.94102 0.97722 1.03184 0.88261 1.23132 1.04132 1.01884 0.91570 1.22442 0.93286 1.00448 0.99182 0.87327 1.21630 0.89140 0.96112 0.97337 1.61851 1.07379 1.03825 1.52430 1.22676 0.98687 0.90126 0.96479 1.20538 0.89000 0.88516 0.95365 0.95065 1.21690 1.02050 0.95321 0.99663 1.44037 1.43008 0.99558 1.43830 1.18675 0.95204 1.25285 0.99865 0.93163 1.25520 0.95530 1.00342 0.95316 1.70151 1.25946 1.33320 1.22018 0.86656 0.79859 0.78683 0.83806 1.20964 1.21640 1.20072 1.20271 0.86844 0.86819 0.96724 0.94737 1.21988 1.04089 0.95003 0.98964 1.22879 0.99691 0.92189 0.93858 0.92925 0.92827 0.92761 0.91751 0.91941 0.89151 0.89147 0.91508 0.95411 0.92386 0.95681 0.93338 0.91646 0.94681 0.93659 0.93560 0.96068 0.89370 0.95805 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.87 37.16 0.37 -0.87 16 2 C -0.09 -0.93 6.21 -26.74 -0.17 -1.09 16 3 C -0.16 -1.73 5.45 -90.62 -0.49 -2.23 16 4 H 0.10 1.06 8.08 -51.92 -0.42 0.64 16 5 C -0.17 -1.99 9.83 -26.69 -0.26 -2.25 16 6 C -0.14 -1.83 5.38 -90.58 -0.49 -2.31 16 7 H 0.11 1.61 6.33 -51.93 -0.33 1.28 16 8 C 0.09 1.30 5.24 -3.82 -0.02 1.28 16 9 N -0.53 -9.85 4.63 -234.33 -1.08 -10.93 16 10 C 0.05 0.94 4.91 -3.70 -0.02 0.92 16 11 C 0.17 3.80 3.66 -67.48 -0.25 3.55 16 12 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 13 C -0.13 -2.59 8.18 37.16 0.30 -2.28 16 14 N -0.58 -14.47 2.82 -157.00 -0.44 -14.91 16 15 C -0.26 -6.94 6.78 -15.06 -0.10 -7.04 16 16 H 0.05 1.37 7.13 -52.49 -0.37 0.99 16 17 C 0.03 0.94 3.36 -17.43 -0.06 0.88 16 18 N -0.87 -24.81 11.71 55.49 0.65 -24.16 16 19 Si 0.88 21.02 29.59 -169.99 -5.03 15.99 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C 0.20 4.70 3.14 -67.49 -0.21 4.48 16 24 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 25 C -0.14 -3.30 7.95 37.16 0.30 -3.00 16 26 C 0.04 0.85 4.76 -3.70 -0.02 0.84 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.61 7.88 -51.93 -0.41 0.20 16 32 H 0.09 1.01 8.03 -51.93 -0.42 0.59 16 33 H 0.09 1.01 8.03 -51.93 -0.42 0.60 16 34 H 0.07 0.94 7.70 -51.93 -0.40 0.54 16 35 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 36 H 0.06 0.98 7.99 -51.93 -0.41 0.56 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.97 7.56 -51.93 -0.39 0.58 16 39 H 0.06 1.43 7.69 -51.93 -0.40 1.03 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.25 6.95 8.32 -40.82 -0.34 6.61 16 42 H 0.05 1.08 7.68 -51.93 -0.40 0.68 16 43 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 2.27 4.94 -51.93 -0.26 2.02 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 1.09 6.12 -51.93 -0.32 0.77 16 LS Contribution 347.83 15.07 5.24 5.24 Total: -1.00 -27.93 347.83 -10.52 -38.45 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -8.73 Total: -0.55 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -1.12 Total: -9.12 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -0.88 Total: -50.00 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.93 -10.52 -38.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930829633.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.014 kcal (2) G-P(sol) polarization free energy of solvation -27.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds