Wall clock time and date at job start Mon Mar 30 2020 05:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52989 * 109.47233 * 2 1 4 4 H 1.09008 * 115.55216 * 29.42220 * 3 2 1 5 5 C 1.52996 * 117.50206 * 243.74804 * 3 2 1 6 6 C 1.53008 * 117.49968 * 175.08654 * 3 2 1 7 7 H 1.08995 * 117.49710 * 0.02562 * 6 3 2 8 8 C 1.52998 * 117.49898 * 214.98319 * 6 3 2 9 9 N 1.46903 * 109.47091 * 175.00156 * 8 6 3 10 10 C 1.46892 * 110.99967 * 169.99703 * 9 8 6 11 11 C 1.53241 * 109.34059 * 187.25418 * 10 9 8 12 12 H 1.08998 * 109.62625 * 65.88033 * 11 10 9 13 13 C 1.53003 * 109.63209 * 186.46529 * 11 10 9 14 14 N 1.47087 * 108.51849 * 306.17405 * 11 10 9 15 15 C 1.36942 * 120.87528 * 231.20580 * 14 11 10 16 16 H 1.07996 * 120.00413 * 52.72877 * 15 14 11 17 17 C 1.38810 * 119.99637 * 232.72375 * 15 14 11 18 18 N 1.31620 * 120.00141 * 18.80576 * 17 15 14 19 19 Si 1.86798 * 120.00188 * 198.81237 * 17 15 14 20 20 H 1.48497 * 109.47510 * 89.99520 * 19 17 15 21 21 H 1.48502 * 109.47193 * 210.00280 * 19 17 15 22 22 H 1.48508 * 109.46630 * 329.99911 * 19 17 15 23 23 C 1.47074 * 118.23722 * 51.18334 * 14 11 10 24 24 H 1.08996 * 109.62879 * 68.72331 * 23 14 11 25 25 C 1.53002 * 109.62645 * 189.10793 * 23 14 11 26 26 C 1.46894 * 110.99764 * 294.30182 * 9 8 6 27 27 H 1.09004 * 109.47344 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46690 * 299.99472 * 1 2 3 29 29 H 1.09001 * 109.47283 * 59.99858 * 1 2 3 30 30 H 1.08998 * 109.47134 * 120.00900 * 2 1 3 31 31 H 1.09003 * 109.46857 * 240.00017 * 2 1 3 32 32 H 1.08998 * 117.50130 * 0.02562 * 5 3 2 33 33 H 1.09001 * 117.50090 * 145.00098 * 5 3 2 34 34 H 1.09006 * 109.47104 * 294.99653 * 8 6 3 35 35 H 1.08995 * 109.47141 * 54.99865 * 8 6 3 36 36 H 1.08995 * 109.49837 * 307.21565 * 10 9 8 37 37 H 1.09006 * 109.49589 * 67.29716 * 10 9 8 38 38 H 1.08992 * 109.46896 * 59.99400 * 13 11 10 39 39 H 1.09002 * 109.47073 * 180.02562 * 13 11 10 40 40 H 1.09000 * 109.46606 * 299.99667 * 13 11 10 41 41 H 0.97002 * 120.00379 * 182.67612 * 18 17 15 42 42 H 1.09001 * 109.47721 * 52.01794 * 25 23 14 43 43 H 1.09000 * 109.47025 * 172.02699 * 25 23 14 44 44 H 1.09001 * 109.46777 * 292.02238 * 25 23 14 45 45 H 1.09001 * 109.49531 * 292.70371 * 26 9 8 46 46 H 1.09004 * 109.49625 * 52.78886 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3891 2.1712 0.4831 5 6 2.8415 1.9084 -1.2171 6 6 3.5504 1.6577 0.1162 7 1 4.1807 0.7717 0.1923 8 6 4.0314 2.8797 0.9012 9 7 5.4966 2.8505 1.0033 10 6 6.0124 4.1173 1.5388 11 6 7.5428 4.1159 1.4603 12 1 7.8558 4.1113 0.4163 13 6 8.0946 5.3590 2.1611 14 7 8.0438 2.9069 2.1317 15 6 9.0158 2.9886 3.0929 16 1 8.8909 3.6570 3.9319 17 6 10.1617 2.2120 2.9888 18 7 10.4995 1.6896 1.8289 19 14 11.2242 1.9084 4.4948 20 1 10.7570 0.6830 5.1915 21 1 12.6378 1.7310 4.0757 22 1 11.1226 3.0699 5.4146 23 6 7.4728 1.6082 1.7438 24 1 7.7821 1.3610 0.7283 25 6 7.9597 0.5243 2.7076 26 6 5.9452 1.7085 1.8111 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5140 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.0051 1.1875 -2.0181 33 1 2.7179 2.9437 -1.5348 34 1 3.7213 3.7883 0.3849 35 1 3.5971 2.8636 1.9007 36 1 5.6189 4.9473 0.9520 37 1 5.7016 4.2265 2.5779 38 1 7.7857 5.3540 3.2063 39 1 9.1831 5.3556 2.1033 40 1 7.7080 6.2533 1.6722 41 1 11.2785 1.1153 1.7641 42 1 7.7687 0.8380 3.7338 43 1 7.4278 -0.4058 2.5069 44 1 9.0295 0.3683 2.5685 45 1 5.6353 1.8511 2.8464 46 1 5.5030 0.7914 1.4217 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930829633.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:59 Heat of formation + Delta-G solvation = 26.773902 kcal Electronic energy + Delta-G solvation = -21469.191921 eV Core-core repulsion = 18587.201001 eV Total energy + Delta-G solvation = -2881.990920 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.28288 -38.83383 -36.27831 -34.47298 -33.38010 -32.68668 -29.59740 -28.16567 -27.42411 -26.20163 -24.59888 -23.49242 -22.12594 -21.35848 -20.91836 -20.83149 -18.10526 -17.11871 -16.47812 -16.25874 -16.09135 -15.94689 -15.33192 -15.27843 -14.88722 -14.61170 -14.35811 -13.87455 -13.59600 -13.32788 -13.25353 -12.96606 -12.89949 -12.74533 -12.60470 -12.45194 -12.38807 -12.27914 -12.06925 -12.03032 -11.92931 -11.83625 -11.53438 -11.44949 -11.16550 -10.74484 -10.53150 -10.12562 -9.17024 -8.34617 -7.67719 -5.56486 1.44048 1.47336 1.54038 2.49718 2.77313 3.14639 3.26446 3.59683 3.73430 3.96385 4.06591 4.26858 4.31179 4.32838 4.37899 4.51056 4.52791 4.55544 4.63170 4.66855 4.73223 4.78284 4.83922 4.87880 4.89116 4.91198 4.97271 4.98209 5.02125 5.04043 5.18665 5.25382 5.26198 5.30905 5.37606 5.48304 5.53779 5.56275 5.70129 5.76602 5.84391 6.25976 6.35406 6.59049 7.27042 7.84382 8.58875 9.17243 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.028860 B = 0.004588 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.952167 B = 6101.648532 C = 6681.763723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.138 4.138 4 H 0.109 0.891 5 C -0.165 4.165 6 C -0.156 4.156 7 H 0.092 0.908 8 C 0.092 3.908 9 N -0.544 5.544 10 C 0.061 3.939 11 C 0.162 3.838 12 H 0.005 0.995 13 C -0.118 4.118 14 N -0.596 5.596 15 C -0.263 4.263 16 H 0.045 0.955 17 C -0.003 4.003 18 N -0.908 5.908 19 Si 0.937 3.063 20 H -0.279 1.279 21 H -0.294 1.294 22 H -0.269 1.269 23 C 0.198 3.802 24 H -0.002 1.002 25 C -0.134 4.134 26 C 0.060 3.940 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.029 0.971 36 H 0.086 0.914 37 H 0.022 0.978 38 H 0.046 0.954 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.250 0.750 42 H 0.039 0.961 43 H 0.047 0.953 44 H 0.061 0.939 45 H 0.018 0.982 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.340 0.003 -2.794 17.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.133 4.133 3 C -0.156 4.156 4 H 0.127 0.873 5 C -0.202 4.202 6 C -0.175 4.175 7 H 0.110 0.890 8 C -0.036 4.036 9 N -0.268 5.268 10 C -0.068 4.068 11 C 0.056 3.944 12 H 0.023 0.977 13 C -0.176 4.176 14 N -0.321 5.321 15 C -0.393 4.393 16 H 0.062 0.938 17 C -0.202 4.202 18 N -0.550 5.550 19 Si 0.764 3.236 20 H -0.205 1.205 21 H -0.221 1.221 22 H -0.193 1.193 23 C 0.092 3.908 24 H 0.016 0.984 25 C -0.192 4.192 26 C -0.069 4.069 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.099 0.901 35 H 0.047 0.953 36 H 0.104 0.896 37 H 0.040 0.960 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.090 0.910 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.036 0.964 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.988 -0.100 -3.325 17.310 hybrid contribution 0.898 -0.297 1.362 1.659 sum -16.089 -0.397 -1.963 16.213 Atomic orbital electron populations 1.21717 0.94389 1.02039 1.02082 1.21137 0.96808 0.93604 1.01777 1.22540 0.92376 0.98606 1.02119 0.87342 1.23204 1.03281 1.02537 0.91215 1.22318 0.94874 0.99339 1.00969 0.89011 1.21650 0.86466 0.97562 0.97875 1.61814 1.09950 1.03089 1.51908 1.22487 0.96065 0.91353 0.96909 1.20713 0.91518 0.88329 0.93810 0.97706 1.21566 1.00249 0.96009 0.99746 1.44321 1.43120 1.00864 1.43781 1.18797 0.95575 1.24921 1.00019 0.93765 1.26061 0.96546 1.00353 0.97286 1.70261 1.26548 1.34331 1.23826 0.85776 0.78025 0.78701 0.81059 1.20540 1.22058 1.19348 1.20211 0.89458 0.86532 0.94647 0.98413 1.21850 1.02688 0.96275 0.98408 1.22552 0.96708 0.93758 0.93887 0.92102 0.92529 0.92315 0.92202 0.91933 0.88784 0.88375 0.90056 0.95267 0.89613 0.95966 0.93511 0.94338 0.91015 0.94037 0.94216 0.93380 0.92041 0.96395 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.87 71.98 0.71 -1.33 16 2 C -0.10 -1.69 6.21 30.59 0.19 -1.50 16 3 C -0.14 -2.70 5.45 -10.80 -0.06 -2.76 16 4 H 0.11 1.96 8.08 -2.38 -0.02 1.94 16 5 C -0.17 -3.47 9.83 30.62 0.30 -3.17 16 6 C -0.16 -3.93 5.38 -10.77 -0.06 -3.99 16 7 H 0.09 2.63 6.33 -2.39 -0.02 2.61 16 8 C 0.09 2.56 5.24 86.30 0.45 3.01 16 9 N -0.54 -19.48 4.63 -895.27 -4.14 -23.62 16 10 C 0.06 2.22 4.91 86.39 0.42 2.64 16 11 C 0.16 7.17 3.66 44.96 0.16 7.33 16 12 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 13 C -0.12 -4.65 8.18 71.98 0.59 -4.06 16 14 N -0.60 -30.23 2.82 -650.64 -1.83 -32.06 16 15 C -0.26 -14.22 6.78 84.03 0.57 -13.65 16 16 H 0.04 2.43 7.13 -2.91 -0.02 2.41 16 17 C 0.00 -0.18 3.36 84.86 0.29 0.10 16 18 N -0.91 -53.05 11.71 21.65 0.25 -52.79 16 19 Si 0.94 43.74 29.59 68.60 2.03 45.77 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 C 0.20 9.46 3.14 44.96 0.14 9.60 16 24 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 25 C -0.13 -6.27 7.95 71.98 0.57 -5.70 16 26 C 0.06 2.36 4.76 86.38 0.41 2.77 16 27 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.10 7.88 -2.39 -0.02 1.08 16 32 H 0.09 1.90 8.03 -2.39 -0.02 1.88 16 33 H 0.10 1.92 8.03 -2.39 -0.02 1.90 16 34 H 0.08 2.03 7.70 -2.38 -0.02 2.02 16 35 H 0.03 0.82 8.12 -2.39 -0.02 0.80 16 36 H 0.09 2.64 7.99 -2.39 -0.02 2.62 16 37 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.05 1.83 7.56 -2.39 -0.02 1.82 16 39 H 0.04 1.69 7.69 -2.39 -0.02 1.67 16 40 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.25 14.17 8.32 -92.71 -0.77 13.40 16 42 H 0.04 1.86 7.68 -2.39 -0.02 1.84 16 43 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.06 3.23 4.94 -2.39 -0.01 3.22 16 45 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.08 2.70 6.12 -2.38 -0.01 2.69 16 Total: -1.00 -60.94 347.83 1.91 -59.04 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.91 Total: 14.37 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 4.70 Total: -10.70 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -5.72 Total: -108.48 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -60.94 1.91 -59.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930829633.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.810 kcal (2) G-P(sol) polarization free energy of solvation -60.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds