Wall clock time and date at job start Mon Mar 30 2020 04:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46910 * 2 1 4 4 C 1.50694 * 109.47288 * 179.97438 * 3 2 1 5 5 C 1.39015 * 126.77486 * 270.00204 * 4 3 2 6 6 C 1.41492 * 126.01806 * 359.97438 * 5 4 3 7 7 H 1.08002 * 120.00152 * 354.25220 * 6 5 4 8 8 C 1.39735 * 119.99877 * 174.25863 * 6 5 4 9 9 N 1.30984 * 120.00120 * 6.02141 * 8 6 5 10 10 Si 1.86800 * 119.99946 * 186.02440 * 8 6 5 11 11 H 1.48498 * 109.47402 * 94.97991 * 10 8 6 12 12 H 1.48501 * 109.47004 * 214.97901 * 10 8 6 13 13 H 1.48499 * 109.47029 * 334.97649 * 10 8 6 14 14 N 1.34839 * 107.95871 * 179.97438 * 5 4 3 15 15 N 1.28672 * 109.64033 * 359.70729 * 14 5 4 16 16 N 1.35025 * 126.76938 * 89.99645 * 4 3 2 17 17 C 1.46495 * 126.49587 * 0.02562 * 16 4 3 18 18 C 1.52997 * 109.47485 * 89.99603 * 17 16 4 19 19 C 1.52996 * 109.47132 * 180.02562 * 18 17 16 20 20 N 1.46907 * 109.47189 * 179.97438 * 19 18 17 21 21 C 1.46900 * 110.99774 * 66.04118 * 20 19 18 22 22 C 1.46893 * 111.00083 * 190.00237 * 20 19 18 23 23 H 1.08997 * 109.47273 * 60.00359 * 1 2 3 24 24 H 1.09005 * 109.47017 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47170 * 299.99606 * 1 2 3 26 26 H 1.08999 * 109.47170 * 240.00394 * 2 1 3 27 27 H 1.08997 * 109.47273 * 119.99641 * 2 1 3 28 28 H 1.09006 * 109.47122 * 59.99904 * 3 2 1 29 29 H 1.09001 * 109.47146 * 300.00291 * 3 2 1 30 30 H 0.97007 * 120.00537 * 180.02562 * 9 8 6 31 31 H 1.09000 * 109.46747 * 329.99466 * 17 16 4 32 32 H 1.08999 * 109.47311 * 209.99872 * 17 16 4 33 33 H 1.09000 * 109.47240 * 60.00165 * 18 17 16 34 34 H 1.09004 * 109.46715 * 300.00100 * 18 17 16 35 35 H 1.08999 * 109.47233 * 300.00004 * 19 18 17 36 36 H 1.09000 * 109.47176 * 60.00372 * 19 18 17 37 37 H 1.09004 * 109.46861 * 60.00527 * 21 20 19 38 38 H 1.09002 * 109.46673 * 180.02562 * 21 20 19 39 39 H 1.08995 * 109.47512 * 300.00428 * 21 20 19 40 40 H 1.08996 * 109.47859 * 59.99920 * 22 20 19 41 41 H 1.08997 * 109.47412 * 180.02562 * 22 20 19 42 42 H 1.09010 * 109.47126 * 299.99799 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.3787 1.4428 1.1145 6 6 3.9595 1.4434 2.4659 7 1 2.9107 1.5375 2.7060 8 6 4.9026 1.3225 3.4899 9 7 6.1814 1.3272 3.2065 10 14 4.3395 1.1540 5.2631 11 1 4.2803 -0.2840 5.6291 12 1 5.2988 1.8528 6.1556 13 1 2.9919 1.7591 5.4141 14 7 5.6552 1.4423 0.6801 15 7 5.6742 1.4356 -0.6064 16 7 4.3556 1.4425 -1.0806 17 6 3.9344 1.4427 -2.4837 18 6 3.7880 2.8852 -2.9722 19 6 3.3475 2.8853 -4.4373 20 7 3.2064 4.2704 -4.9061 21 6 4.5072 4.9524 -4.9322 22 6 2.5611 4.3166 -6.2250 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 6.8361 1.2429 3.9173 31 1 2.9774 0.9290 -2.5758 32 1 4.6821 0.9287 -3.0877 33 1 4.7450 3.3988 -2.8801 34 1 3.0402 3.3991 -2.3682 35 1 4.0950 2.3712 -5.0415 36 1 2.3904 2.3718 -4.5290 37 1 5.1817 4.4227 -5.6049 38 1 4.3738 5.9759 -5.2825 39 1 4.9312 4.9647 -3.9281 40 1 1.5704 3.8668 -6.1608 41 1 2.4695 5.3534 -6.5485 42 1 3.1652 3.7639 -6.9446 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958541177.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:16 Heat of formation + Delta-G solvation = 72.607135 kcal Electronic energy + Delta-G solvation = -20506.173618 eV Core-core repulsion = 17522.629833 eV Total energy + Delta-G solvation = -2983.543785 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.97850 -37.83401 -34.78349 -34.19932 -32.99898 -30.59717 -29.60709 -27.73246 -26.86019 -25.87032 -24.40825 -22.94057 -21.23606 -20.82754 -20.21160 -18.89598 -17.09774 -15.88119 -15.54403 -15.15379 -14.92189 -14.73344 -14.29060 -14.13940 -13.90928 -13.42144 -12.91311 -12.61162 -12.50178 -12.36727 -12.06099 -11.83232 -11.69861 -11.55981 -11.40323 -11.29355 -11.08625 -10.93010 -10.78450 -10.64780 -10.46158 -10.24217 -10.07578 -9.64244 -9.22168 -8.78595 -8.50823 -8.35837 -7.32497 -6.31061 -4.09267 2.86628 3.19625 3.24502 3.27464 3.58170 3.92767 4.18670 4.37539 4.86016 4.99779 5.05174 5.22793 5.29155 5.37835 5.43052 5.45253 5.47889 5.49244 5.59504 5.61551 5.64776 5.65818 5.71220 5.85113 5.95703 6.14284 6.14942 6.24458 6.34081 6.36291 6.51132 6.67011 6.86094 6.86717 6.89701 7.02664 7.21027 7.49312 7.59435 8.23547 8.49584 8.90086 9.15622 10.28015 10.66202 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.021223 B = 0.004764 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.022030 B = 5875.672285 C = 6707.095801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.013 4.013 4 C -0.108 4.108 5 C 0.152 3.848 6 C -0.451 4.451 7 H 0.080 0.920 8 C 0.074 3.926 9 N -0.778 5.778 10 Si 0.904 3.096 11 H -0.274 1.274 12 H -0.281 1.281 13 H -0.265 1.265 14 N -0.229 5.229 15 N -0.137 5.137 16 N -0.375 5.375 17 C 0.141 3.859 18 C -0.130 4.130 19 C 0.059 3.941 20 N -0.548 5.548 21 C 0.020 3.980 22 C 0.025 3.975 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.270 0.730 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.025 0.975 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.952 2.030 -13.186 16.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.053 4.053 4 C -0.240 4.240 5 C 0.022 3.978 6 C -0.487 4.487 7 H 0.098 0.902 8 C -0.145 4.145 9 N -0.405 5.405 10 Si 0.729 3.271 11 H -0.200 1.200 12 H -0.206 1.206 13 H -0.189 1.189 14 N -0.101 5.101 15 N -0.113 5.113 16 N -0.171 5.171 17 C 0.017 3.983 18 C -0.170 4.170 19 C -0.070 4.070 20 N -0.272 5.272 21 C -0.128 4.128 22 C -0.123 4.123 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.044 0.956 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -7.488 2.269 -13.175 15.323 hybrid contribution -0.731 -0.502 0.361 0.957 sum -8.219 1.767 -12.814 15.325 Atomic orbital electron populations 1.21782 0.96624 1.00866 1.01364 1.21522 0.94321 0.97655 1.02143 1.19613 0.88405 0.95953 1.01325 1.21429 0.93187 1.21953 0.87417 1.18979 0.85911 0.99516 0.93365 1.18512 0.94284 1.48264 0.87656 0.90163 1.25759 0.94581 0.93666 1.00480 1.70030 1.00872 1.35921 1.33634 0.86381 0.79308 0.78743 0.82625 1.19960 1.20599 1.18894 1.75077 1.20233 1.15210 0.99591 1.81486 0.96816 1.25754 1.07222 1.49444 1.06867 1.56149 1.04614 1.21242 1.00320 0.96754 0.80032 1.21986 1.03032 0.96993 0.94968 1.22069 1.00761 0.88597 0.95526 1.61945 1.22851 1.16186 1.26175 1.22458 0.89496 0.98594 1.02251 1.22374 0.99110 1.01820 0.89031 0.93373 0.93371 0.92703 0.93242 0.91137 0.90566 0.93253 0.91894 0.90301 0.90151 0.91056 0.90492 0.94619 0.90612 0.95641 0.91550 0.90700 0.91362 0.91465 0.95813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.55 16 2 C -0.12 -1.93 5.92 -26.73 -0.16 -2.09 16 3 C -0.01 -0.24 5.09 -27.89 -0.14 -0.38 16 4 C -0.11 -2.52 6.37 -80.90 -0.52 -3.03 16 5 C 0.15 4.25 6.71 -85.02 -0.57 3.68 16 6 C -0.45 -12.41 9.12 -37.78 -0.34 -12.76 16 7 H 0.08 2.05 7.26 -52.49 -0.38 1.67 16 8 C 0.07 1.99 5.49 -17.35 -0.10 1.90 16 9 N -0.78 -22.42 11.95 55.54 0.66 -21.75 16 10 Si 0.90 19.87 29.56 -169.99 -5.03 14.85 16 11 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 14 N -0.23 -6.78 10.58 32.05 0.34 -6.44 16 15 N -0.14 -3.63 13.74 60.35 0.83 -2.81 16 16 N -0.38 -8.29 3.63 -56.18 -0.20 -8.50 16 17 C 0.14 2.26 6.15 -4.05 -0.02 2.23 16 18 C -0.13 -1.87 5.46 -26.73 -0.15 -2.02 16 19 C 0.06 0.67 4.96 -3.82 -0.02 0.65 16 20 N -0.55 -6.26 5.02 -251.26 -1.26 -7.52 16 21 C 0.02 0.22 9.32 60.06 0.56 0.78 16 22 C 0.03 0.22 9.57 60.06 0.57 0.80 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 28 H 0.08 1.43 7.51 -51.93 -0.39 1.04 16 29 H 0.05 0.80 7.84 -51.93 -0.41 0.39 16 30 H 0.27 7.16 8.30 -40.82 -0.34 6.82 16 31 H 0.08 1.10 7.78 -51.93 -0.40 0.70 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.14 6.55 -51.93 -0.34 0.80 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 36 H 0.08 0.77 8.06 -51.93 -0.42 0.35 16 37 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 39 H 0.07 0.90 6.47 -51.93 -0.34 0.57 16 40 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 41 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 42 H 0.02 0.20 8.14 -51.92 -0.42 -0.23 16 LS Contribution 345.41 15.07 5.21 5.21 Total: -1.00 -32.25 345.41 -7.27 -39.52 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -7.30 Total: -0.75 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -0.51 Total: -11.80 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 0.37 Total: -47.02 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.03 Total: 14.85 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.25 -7.27 -39.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958541177.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.130 kcal (2) G-P(sol) polarization free energy of solvation -32.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds