Wall clock time and date at job start Mon Mar 30 2020 04:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46910 * 2 1 4 4 C 1.50694 * 109.47288 * 179.97438 * 3 2 1 5 5 C 1.39015 * 126.77486 * 270.00204 * 4 3 2 6 6 C 1.41492 * 126.01806 * 359.97438 * 5 4 3 7 7 H 1.08002 * 120.00152 * 354.25220 * 6 5 4 8 8 C 1.39735 * 119.99877 * 174.25863 * 6 5 4 9 9 N 1.30984 * 120.00120 * 6.02141 * 8 6 5 10 10 Si 1.86800 * 119.99946 * 186.02440 * 8 6 5 11 11 H 1.48498 * 109.47402 * 94.97991 * 10 8 6 12 12 H 1.48501 * 109.47004 * 214.97901 * 10 8 6 13 13 H 1.48499 * 109.47029 * 334.97649 * 10 8 6 14 14 N 1.34839 * 107.95871 * 179.97438 * 5 4 3 15 15 N 1.28672 * 109.64033 * 359.70729 * 14 5 4 16 16 N 1.35025 * 126.76938 * 89.99645 * 4 3 2 17 17 C 1.46495 * 126.49587 * 0.02562 * 16 4 3 18 18 C 1.52997 * 109.47485 * 89.99603 * 17 16 4 19 19 C 1.52996 * 109.47132 * 180.02562 * 18 17 16 20 20 N 1.46907 * 109.47189 * 179.97438 * 19 18 17 21 21 C 1.46900 * 110.99774 * 66.04118 * 20 19 18 22 22 C 1.46893 * 111.00083 * 190.00237 * 20 19 18 23 23 H 1.08997 * 109.47273 * 60.00359 * 1 2 3 24 24 H 1.09005 * 109.47017 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47170 * 299.99606 * 1 2 3 26 26 H 1.08999 * 109.47170 * 240.00394 * 2 1 3 27 27 H 1.08997 * 109.47273 * 119.99641 * 2 1 3 28 28 H 1.09006 * 109.47122 * 59.99904 * 3 2 1 29 29 H 1.09001 * 109.47146 * 300.00291 * 3 2 1 30 30 H 0.97007 * 120.00537 * 180.02562 * 9 8 6 31 31 H 1.09000 * 109.46747 * 329.99466 * 17 16 4 32 32 H 1.08999 * 109.47311 * 209.99872 * 17 16 4 33 33 H 1.09000 * 109.47240 * 60.00165 * 18 17 16 34 34 H 1.09004 * 109.46715 * 300.00100 * 18 17 16 35 35 H 1.08999 * 109.47233 * 300.00004 * 19 18 17 36 36 H 1.09000 * 109.47176 * 60.00372 * 19 18 17 37 37 H 1.09004 * 109.46861 * 60.00527 * 21 20 19 38 38 H 1.09002 * 109.46673 * 180.02562 * 21 20 19 39 39 H 1.08995 * 109.47512 * 300.00428 * 21 20 19 40 40 H 1.08996 * 109.47859 * 59.99920 * 22 20 19 41 41 H 1.08997 * 109.47412 * 180.02562 * 22 20 19 42 42 H 1.09010 * 109.47126 * 299.99799 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.3787 1.4428 1.1145 6 6 3.9595 1.4434 2.4659 7 1 2.9107 1.5375 2.7060 8 6 4.9026 1.3225 3.4899 9 7 6.1814 1.3272 3.2065 10 14 4.3395 1.1540 5.2631 11 1 4.2803 -0.2840 5.6291 12 1 5.2988 1.8528 6.1556 13 1 2.9919 1.7591 5.4141 14 7 5.6552 1.4423 0.6801 15 7 5.6742 1.4356 -0.6064 16 7 4.3556 1.4425 -1.0806 17 6 3.9344 1.4427 -2.4837 18 6 3.7880 2.8852 -2.9722 19 6 3.3475 2.8853 -4.4373 20 7 3.2064 4.2704 -4.9061 21 6 4.5072 4.9524 -4.9322 22 6 2.5611 4.3166 -6.2250 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 6.8361 1.2429 3.9173 31 1 2.9774 0.9290 -2.5758 32 1 4.6821 0.9287 -3.0877 33 1 4.7450 3.3988 -2.8801 34 1 3.0402 3.3991 -2.3682 35 1 4.0950 2.3712 -5.0415 36 1 2.3904 2.3718 -4.5290 37 1 5.1817 4.4227 -5.6049 38 1 4.3738 5.9759 -5.2825 39 1 4.9312 4.9647 -3.9281 40 1 1.5704 3.8668 -6.1608 41 1 2.4695 5.3534 -6.5485 42 1 3.1652 3.7639 -6.9446 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958541177.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:15 Heat of formation + Delta-G solvation = 50.522495 kcal Electronic energy + Delta-G solvation = -20507.131280 eV Core-core repulsion = 17522.629833 eV Total energy + Delta-G solvation = -2984.501447 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.88610 -38.76696 -36.29220 -35.74471 -34.75797 -32.07871 -31.37265 -28.52266 -28.40523 -27.15087 -26.27099 -24.14733 -22.54319 -22.17669 -21.79794 -20.60856 -19.00202 -17.12173 -16.85417 -16.56128 -16.36765 -15.89057 -15.71794 -15.38593 -15.28985 -14.90449 -14.58275 -13.92610 -13.57664 -13.40717 -13.24904 -13.07858 -12.92579 -12.82131 -12.73238 -12.63204 -12.49969 -12.32835 -12.30964 -11.98446 -11.96736 -11.72154 -11.49650 -11.47208 -11.14954 -10.71342 -10.21956 -9.33913 -9.31999 -8.28211 -6.15515 1.01678 1.44389 1.45002 1.58985 2.00351 2.34465 2.36826 3.00171 3.53948 3.73650 3.96206 4.06610 4.12865 4.17425 4.23686 4.33888 4.37011 4.39448 4.45883 4.62544 4.65301 4.68343 4.72192 4.76562 4.92105 4.94482 4.98608 5.03342 5.06698 5.13918 5.19195 5.27652 5.31327 5.39340 5.56495 5.58554 5.70438 6.01472 6.09404 6.42822 6.48488 6.92594 7.12394 8.31483 8.71978 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.021223 B = 0.004764 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.022030 B = 5875.672285 C = 6707.095801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 C -0.013 4.013 4 C -0.074 4.074 5 C 0.103 3.897 6 C -0.479 4.479 7 H 0.091 0.909 8 C 0.020 3.980 9 N -0.830 5.830 10 Si 0.983 3.017 11 H -0.269 1.269 12 H -0.279 1.279 13 H -0.250 1.250 14 N -0.284 5.284 15 N -0.179 5.179 16 N -0.358 5.358 17 C 0.128 3.872 18 C -0.117 4.117 19 C 0.067 3.933 20 N -0.565 5.565 21 C 0.021 3.979 22 C 0.025 3.975 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.271 0.729 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.043 0.957 36 H 0.097 0.903 37 H 0.030 0.970 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.270 1.819 -14.784 19.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.150 4.150 3 C -0.053 4.053 4 C -0.210 4.210 5 C -0.030 4.030 6 C -0.516 4.516 7 H 0.109 0.891 8 C -0.193 4.193 9 N -0.459 5.459 10 Si 0.805 3.195 11 H -0.194 1.194 12 H -0.204 1.204 13 H -0.173 1.173 14 N -0.153 5.153 15 N -0.153 5.153 16 N -0.152 5.152 17 C 0.006 3.994 18 C -0.156 4.156 19 C -0.061 4.061 20 N -0.289 5.289 21 C -0.127 4.127 22 C -0.122 4.122 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.131 0.869 32 H 0.112 0.888 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.116 0.884 37 H 0.049 0.951 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -10.788 2.064 -14.854 18.474 hybrid contribution 0.171 -0.406 0.603 0.746 sum -10.618 1.658 -14.252 17.849 Atomic orbital electron populations 1.21714 0.93318 1.02274 1.02510 1.21432 0.97098 0.95380 1.01125 1.19844 0.84632 0.98052 1.02777 1.22260 0.95385 1.16746 0.86602 1.19598 0.86511 1.01748 0.95145 1.18883 0.94968 1.49422 0.88312 0.89114 1.26739 0.94366 0.92863 1.05309 1.70198 1.02365 1.38255 1.35073 0.85179 0.79234 0.78808 0.76296 1.19409 1.20393 1.17316 1.75020 1.21846 1.17560 1.00886 1.81354 0.98763 1.28670 1.06531 1.49919 1.05750 1.52637 1.06858 1.21808 1.02247 0.98606 0.76717 1.21810 1.01518 0.95027 0.97253 1.21984 1.01977 0.89202 0.92960 1.61928 1.23005 1.16026 1.27989 1.22430 0.89631 0.99524 1.01149 1.22430 0.99403 1.02691 0.87714 0.91227 0.91906 0.92584 0.92611 0.93963 0.90869 0.89956 0.91931 0.86886 0.88831 0.93454 0.91703 0.93830 0.88438 0.95133 0.90316 0.92803 0.90283 0.90673 0.95125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.91 71.98 0.71 -2.35 16 2 C -0.11 -3.36 5.92 30.59 0.18 -3.18 16 3 C -0.01 -0.46 5.09 29.85 0.15 -0.31 16 4 C -0.07 -3.44 6.37 42.25 0.27 -3.17 16 5 C 0.10 5.94 6.71 39.67 0.27 6.21 16 6 C -0.48 -27.16 9.12 23.43 0.21 -26.95 16 7 H 0.09 4.71 7.26 -2.91 -0.02 4.69 16 8 C 0.02 1.14 5.49 85.18 0.47 1.61 16 9 N -0.83 -50.35 11.95 21.79 0.26 -50.09 16 10 Si 0.98 41.79 29.56 68.60 2.03 43.82 16 11 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 12 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 13 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 14 N -0.28 -17.68 10.58 -52.52 -0.56 -18.23 16 15 N -0.18 -9.83 13.74 37.02 0.51 -9.32 16 16 N -0.36 -15.74 3.63 -331.65 -1.20 -16.95 16 17 C 0.13 3.82 6.15 86.38 0.53 4.35 16 18 C -0.12 -3.16 5.46 30.59 0.17 -2.99 16 19 C 0.07 1.32 4.96 86.30 0.43 1.75 16 20 N -0.57 -11.50 5.02 -948.85 -4.76 -16.26 16 21 C 0.02 0.43 9.32 127.69 1.19 1.62 16 22 C 0.03 0.37 9.57 127.69 1.22 1.59 16 23 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 25 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.07 2.62 7.51 -2.38 -0.02 2.60 16 29 H 0.08 2.32 7.84 -2.39 -0.02 2.30 16 30 H 0.27 15.16 8.30 -92.70 -0.77 14.39 16 31 H 0.11 2.66 7.78 -2.39 -0.02 2.64 16 32 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.05 1.52 6.55 -2.39 -0.02 1.50 16 34 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.04 0.81 8.12 -2.39 -0.02 0.79 16 36 H 0.10 1.53 8.06 -2.39 -0.02 1.51 16 37 H 0.03 0.58 8.14 -2.38 -0.02 0.56 16 38 H 0.08 1.37 8.12 -2.39 -0.02 1.35 16 39 H 0.05 1.31 6.47 -2.39 -0.02 1.29 16 40 H 0.08 0.98 8.12 -2.39 -0.02 0.96 16 41 H 0.07 0.97 8.12 -2.39 -0.02 0.95 16 42 H 0.03 0.41 8.14 -2.38 -0.02 0.39 16 Total: -1.00 -75.23 345.41 3.05 -72.18 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.97 Total: 16.68 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: 5.80 Total: -21.83 kcal Atomic # 7 Polarization: -105.10 SS G_CDS: -5.75 Total: -110.85 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -75.23 3.05 -72.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958541177.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.706 kcal (2) G-P(sol) polarization free energy of solvation -75.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds