Wall clock time and date at job start Mon Mar 30 2020 04:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47494 * 2 1 4 4 C 1.50694 * 109.47331 * 179.97438 * 3 2 1 5 5 C 1.35352 * 126.91245 * 270.12871 * 4 3 2 6 6 C 1.50700 * 126.75197 * 0.02562 * 5 4 3 7 7 C 1.52996 * 109.47281 * 270.24456 * 6 5 4 8 8 N 1.46900 * 109.47485 * 179.97438 * 7 6 5 9 9 N 1.33775 * 106.49643 * 180.24182 * 5 4 3 10 10 N 1.28629 * 108.88590 * 359.77853 * 9 5 4 11 11 N 1.28716 * 110.17872 * 359.97438 * 10 9 5 12 12 C 1.46506 * 125.86711 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46967 * 90.03262 * 12 11 10 14 14 C 1.52996 * 109.47188 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47076 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00209 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99983 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99620 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00221 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46944 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47320 * 120.00109 * 19 17 15 22 22 H 1.48500 * 109.46985 * 240.00704 * 19 17 15 23 23 H 1.08996 * 109.47174 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47194 * 300.00379 * 1 2 3 25 25 H 1.08999 * 109.47057 * 60.00403 * 1 2 3 26 26 H 1.09000 * 109.47618 * 239.99705 * 2 1 3 27 27 H 1.09004 * 109.46967 * 120.00078 * 2 1 3 28 28 H 1.08995 * 109.47210 * 59.99630 * 3 2 1 29 29 H 1.08999 * 109.46640 * 299.99852 * 3 2 1 30 30 H 1.09004 * 109.46876 * 30.24757 * 6 5 4 31 31 H 1.09000 * 109.47267 * 150.24676 * 6 5 4 32 32 H 1.09002 * 109.47290 * 300.00505 * 7 6 5 33 33 H 1.09000 * 109.46790 * 59.99928 * 7 6 5 34 34 H 1.00899 * 111.00340 * 179.97438 * 8 7 6 35 35 H 1.00902 * 110.99890 * 303.95971 * 8 7 6 36 36 H 1.08994 * 109.46947 * 210.02680 * 12 11 10 37 37 H 1.08997 * 109.47271 * 330.03197 * 12 11 10 38 38 H 1.09011 * 109.46854 * 299.99834 * 13 12 11 39 39 H 1.09005 * 109.47366 * 59.99260 * 13 12 11 40 40 H 1.08994 * 109.46779 * 299.99451 * 14 13 12 41 41 H 1.08997 * 109.47218 * 59.99832 * 14 13 12 42 42 H 0.97008 * 119.99745 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3595 1.4401 1.0832 6 6 3.9350 1.4366 2.5292 7 6 3.7849 2.8778 3.0202 8 7 3.3706 2.8744 4.4296 9 7 5.6134 1.4465 0.6171 10 7 5.5796 1.4476 -0.6688 11 7 4.3602 1.4418 -1.0809 12 6 3.9271 1.4415 -2.4805 13 6 3.7832 -0.0011 -2.9695 14 6 3.3316 -0.0014 -4.4313 15 6 3.1904 -1.4223 -4.9131 16 1 3.4013 -2.2431 -4.2435 17 6 2.7910 -1.6746 -6.2084 18 7 2.5337 -0.6751 -7.0236 19 14 2.6154 -3.4358 -6.8055 20 1 2.9606 -4.3690 -5.7031 21 1 1.2144 -3.6753 -7.2357 22 1 3.5311 -3.6634 -7.9522 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9562 -0.8900 30 1 2.9810 0.9183 2.6265 31 1 4.6889 0.9254 3.1279 32 1 4.7389 3.3960 2.9228 33 1 3.0311 3.3890 2.4215 34 1 3.2649 3.8155 4.7777 35 1 2.5212 2.3444 4.5555 36 1 2.9671 1.9508 -2.5638 37 1 4.6674 1.9596 -3.0900 38 1 4.7434 -0.5105 -2.8861 39 1 3.0429 -0.5193 -2.3599 40 1 2.3716 0.5080 -4.5150 41 1 4.0722 0.5166 -5.0405 42 1 2.2531 -0.8526 -7.9351 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958543811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:09 Heat of formation + Delta-G solvation = 54.452487 kcal Electronic energy + Delta-G solvation = -20364.268222 eV Core-core repulsion = 17379.937193 eV Total energy + Delta-G solvation = -2984.331029 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.11168 -36.29209 -35.99965 -34.81506 -33.32685 -31.73002 -31.29519 -28.72441 -27.21300 -26.39569 -24.00081 -22.99439 -21.97028 -21.03463 -20.65205 -19.99085 -17.02770 -16.33925 -16.16284 -15.91318 -15.31150 -15.20751 -14.56473 -14.37883 -14.29622 -14.12670 -13.32815 -13.07157 -12.72968 -12.39113 -12.16255 -12.11385 -12.02017 -11.81185 -11.48767 -11.37820 -11.17223 -11.07570 -11.00856 -10.78718 -10.69293 -10.43477 -9.96330 -9.94344 -9.48810 -9.20503 -8.98786 -8.75461 -8.48451 -6.13345 -4.16374 1.80240 2.64068 2.67799 3.23932 3.32116 3.36279 4.19312 4.36009 4.47057 4.70237 4.74418 4.85428 4.96338 5.00277 5.09881 5.21366 5.23598 5.28767 5.37611 5.41858 5.53442 5.55779 5.67415 5.71039 5.84620 5.91314 5.98626 6.06608 6.12066 6.21999 6.31702 6.40910 6.45890 6.77080 6.82455 6.90743 7.14146 7.45596 7.55242 7.83952 8.24433 8.77453 8.89390 9.48871 10.97892 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.026737 B = 0.004027 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.982075 B = 6951.577902 C = 7510.077626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.044 4.044 4 C -0.012 4.012 5 C -0.029 4.029 6 C -0.026 4.026 7 C 0.068 3.932 8 N -0.851 5.851 9 N -0.275 5.275 10 N -0.087 5.087 11 N -0.273 5.273 12 C 0.107 3.893 13 C -0.123 4.123 14 C 0.027 3.973 15 C -0.522 4.522 16 H 0.056 0.944 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.026 0.974 34 H 0.342 0.658 35 H 0.340 0.660 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.020 0.980 41 H 0.021 0.979 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.640 6.904 17.238 19.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.084 4.084 4 C -0.145 4.145 5 C -0.168 4.168 6 C -0.066 4.066 7 C -0.063 4.063 8 N -0.381 5.381 9 N -0.140 5.140 10 N -0.065 5.065 11 N -0.066 5.066 12 C -0.013 4.013 13 C -0.162 4.162 14 C -0.011 4.011 15 C -0.561 4.561 16 H 0.075 0.925 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.045 0.955 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.038 0.962 41 H 0.040 0.960 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.465 6.595 16.717 18.140 hybrid contribution -2.037 -0.439 -0.813 2.237 sum -4.502 6.156 15.904 17.638 Atomic orbital electron populations 1.21744 0.95109 1.02135 1.01740 1.21609 0.96158 0.95269 1.03261 1.20154 0.85944 0.98679 1.03595 1.21915 0.95975 1.09711 0.86941 1.21502 0.89617 1.09492 0.96234 1.19725 1.01937 0.96908 0.88017 1.21736 1.00490 0.96465 0.87645 1.58670 1.40456 1.19929 1.19028 1.75004 1.20715 1.17200 1.01068 1.78297 1.01832 1.19948 1.06400 1.47604 1.04707 1.45191 1.09114 1.22580 1.01759 1.02597 0.74378 1.22133 1.02064 0.90916 1.01078 1.19044 0.96671 0.97931 0.87449 1.21167 1.45919 0.92074 0.96895 0.92547 1.25002 0.95217 0.97241 0.96812 1.69959 1.46234 1.30683 1.06379 0.86514 0.77763 0.84786 0.78857 1.19683 1.20909 1.20876 0.92325 0.92928 0.92314 0.90801 0.91685 0.89663 0.90335 0.90618 0.89433 0.90661 0.95531 0.84559 0.84835 0.88313 0.87817 0.91963 0.92156 0.96158 0.96036 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.05 16 2 C -0.12 -1.39 5.92 -26.73 -0.16 -1.54 16 3 C -0.04 -0.48 5.19 -27.89 -0.14 -0.62 16 4 C -0.01 -0.17 6.25 -82.09 -0.51 -0.68 16 5 C -0.03 -0.42 6.50 -82.77 -0.54 -0.95 16 6 C -0.03 -0.29 5.74 -27.89 -0.16 -0.45 16 7 C 0.07 0.65 6.77 -3.83 -0.03 0.62 16 8 N -0.85 -6.61 9.62 -10.37 -0.10 -6.71 16 9 N -0.27 -4.87 12.41 33.29 0.41 -4.46 16 10 N -0.09 -1.60 13.16 60.35 0.79 -0.81 16 11 N -0.27 -4.45 3.34 -57.05 -0.19 -4.64 16 12 C 0.11 1.69 6.19 -4.04 -0.02 1.66 16 13 C -0.12 -2.36 5.48 -26.73 -0.15 -2.51 16 14 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 15 C -0.52 -14.13 9.11 -34.44 -0.31 -14.44 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 19 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 1.00 6.13 -51.93 -0.32 0.69 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.73 7.99 -51.93 -0.42 0.32 16 29 H 0.08 0.82 7.16 -51.93 -0.37 0.45 16 30 H 0.08 0.69 7.99 -51.93 -0.42 0.27 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.34 2.10 9.08 -39.29 -0.36 1.75 16 35 H 0.34 2.09 8.99 -39.29 -0.35 1.74 16 36 H 0.10 1.35 7.12 -51.93 -0.37 0.98 16 37 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 38 H 0.06 1.28 8.14 -51.92 -0.42 0.85 16 39 H 0.06 1.13 6.13 -51.93 -0.32 0.81 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 346.36 15.07 5.22 5.22 Total: -1.00 -31.03 346.36 -7.15 -38.18 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -7.11 Total: 0.11 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -1.89 Total: -17.94 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 1.65 Total: -41.63 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.03 -7.15 -38.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958543811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.628 kcal (2) G-P(sol) polarization free energy of solvation -31.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds