Wall clock time and date at job start Mon Mar 30 2020 04:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47494 * 2 1 4 4 C 1.50694 * 109.47331 * 179.97438 * 3 2 1 5 5 C 1.35352 * 126.91245 * 270.12871 * 4 3 2 6 6 C 1.50700 * 126.75197 * 0.02562 * 5 4 3 7 7 C 1.52996 * 109.47281 * 270.24456 * 6 5 4 8 8 N 1.46900 * 109.47485 * 179.97438 * 7 6 5 9 9 N 1.33775 * 106.49643 * 180.24182 * 5 4 3 10 10 N 1.28629 * 108.88590 * 359.77853 * 9 5 4 11 11 N 1.28716 * 110.17872 * 359.97438 * 10 9 5 12 12 C 1.46506 * 125.86711 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46967 * 90.03262 * 12 11 10 14 14 C 1.52996 * 109.47188 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47076 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00209 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99983 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99620 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00221 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46944 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47320 * 120.00109 * 19 17 15 22 22 H 1.48500 * 109.46985 * 240.00704 * 19 17 15 23 23 H 1.08996 * 109.47174 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47194 * 300.00379 * 1 2 3 25 25 H 1.08999 * 109.47057 * 60.00403 * 1 2 3 26 26 H 1.09000 * 109.47618 * 239.99705 * 2 1 3 27 27 H 1.09004 * 109.46967 * 120.00078 * 2 1 3 28 28 H 1.08995 * 109.47210 * 59.99630 * 3 2 1 29 29 H 1.08999 * 109.46640 * 299.99852 * 3 2 1 30 30 H 1.09004 * 109.46876 * 30.24757 * 6 5 4 31 31 H 1.09000 * 109.47267 * 150.24676 * 6 5 4 32 32 H 1.09002 * 109.47290 * 300.00505 * 7 6 5 33 33 H 1.09000 * 109.46790 * 59.99928 * 7 6 5 34 34 H 1.00899 * 111.00340 * 179.97438 * 8 7 6 35 35 H 1.00902 * 110.99890 * 303.95971 * 8 7 6 36 36 H 1.08994 * 109.46947 * 210.02680 * 12 11 10 37 37 H 1.08997 * 109.47271 * 330.03197 * 12 11 10 38 38 H 1.09011 * 109.46854 * 299.99834 * 13 12 11 39 39 H 1.09005 * 109.47366 * 59.99260 * 13 12 11 40 40 H 1.08994 * 109.46779 * 299.99451 * 14 13 12 41 41 H 1.08997 * 109.47218 * 59.99832 * 14 13 12 42 42 H 0.97008 * 119.99745 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3595 1.4401 1.0832 6 6 3.9350 1.4366 2.5292 7 6 3.7849 2.8778 3.0202 8 7 3.3706 2.8744 4.4296 9 7 5.6134 1.4465 0.6171 10 7 5.5796 1.4476 -0.6688 11 7 4.3602 1.4418 -1.0809 12 6 3.9271 1.4415 -2.4805 13 6 3.7832 -0.0011 -2.9695 14 6 3.3316 -0.0014 -4.4313 15 6 3.1904 -1.4223 -4.9131 16 1 3.4013 -2.2431 -4.2435 17 6 2.7910 -1.6746 -6.2084 18 7 2.5337 -0.6751 -7.0236 19 14 2.6154 -3.4358 -6.8055 20 1 2.9606 -4.3690 -5.7031 21 1 1.2144 -3.6753 -7.2357 22 1 3.5311 -3.6634 -7.9522 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9562 -0.8900 30 1 2.9810 0.9183 2.6265 31 1 4.6889 0.9254 3.1279 32 1 4.7389 3.3960 2.9228 33 1 3.0311 3.3890 2.4215 34 1 3.2649 3.8155 4.7777 35 1 2.5212 2.3444 4.5555 36 1 2.9671 1.9508 -2.5638 37 1 4.6674 1.9596 -3.0900 38 1 4.7434 -0.5105 -2.8861 39 1 3.0429 -0.5193 -2.3599 40 1 2.3716 0.5080 -4.5150 41 1 4.0722 0.5166 -5.0405 42 1 2.2531 -0.8526 -7.9351 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958543811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:08 Heat of formation + Delta-G solvation = 33.913535 kcal Electronic energy + Delta-G solvation = -20365.158858 eV Core-core repulsion = 17379.937193 eV Total energy + Delta-G solvation = -2985.221665 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.33089 -37.46611 -37.02781 -35.90249 -35.01176 -33.12371 -32.55593 -29.73974 -28.79424 -27.36612 -25.75783 -23.89520 -22.92296 -22.67833 -21.76145 -21.19873 -18.68899 -17.82253 -17.24791 -16.97017 -16.52702 -16.28491 -16.11005 -15.62273 -15.31339 -14.94247 -14.46955 -14.25449 -14.13752 -13.89527 -13.42046 -13.17793 -13.04986 -12.99117 -12.81011 -12.75706 -12.54101 -12.37446 -12.20749 -12.15547 -11.96431 -11.68836 -11.56217 -11.42433 -11.34664 -10.83041 -10.58849 -9.91543 -9.57052 -8.24493 -6.34349 0.60428 1.37506 1.39001 1.42700 1.48334 1.51466 2.38364 3.10038 3.26535 3.52582 3.64406 3.77069 3.91736 4.01461 4.07710 4.13579 4.22308 4.26783 4.35757 4.47128 4.49761 4.60004 4.72264 4.73705 4.79876 4.92184 4.96294 5.01520 5.07902 5.17517 5.24617 5.33667 5.34661 5.43185 5.49843 5.62392 5.65861 5.78216 6.18551 6.24908 6.67413 6.80143 7.34903 7.52941 8.87022 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.026737 B = 0.004027 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.982075 B = 6951.577902 C = 7510.077626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C -0.042 4.042 4 C -0.005 4.005 5 C -0.030 4.030 6 C -0.022 4.022 7 C 0.076 3.924 8 N -0.855 5.855 9 N -0.301 5.301 10 N -0.128 5.128 11 N -0.279 5.279 12 C 0.115 3.885 13 C -0.105 4.105 14 C 0.033 3.967 15 C -0.543 4.543 16 H 0.053 0.947 17 C 0.007 3.993 18 N -0.927 5.927 19 Si 0.958 3.042 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.280 1.280 23 H 0.055 0.945 24 H 0.076 0.924 25 H 0.053 0.947 26 H 0.042 0.958 27 H 0.070 0.930 28 H 0.118 0.882 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.037 0.963 34 H 0.352 0.648 35 H 0.351 0.649 36 H 0.125 0.875 37 H 0.104 0.896 38 H 0.042 0.958 39 H 0.065 0.935 40 H 0.012 0.988 41 H 0.000 1.000 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.443 6.841 18.757 20.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C -0.081 4.081 4 C -0.138 4.138 5 C -0.171 4.171 6 C -0.062 4.062 7 C -0.055 4.055 8 N -0.387 5.387 9 N -0.166 5.166 10 N -0.105 5.105 11 N -0.072 5.072 12 C -0.005 4.005 13 C -0.144 4.144 14 C -0.005 4.005 15 C -0.581 4.581 16 H 0.071 0.929 17 C -0.191 4.191 18 N -0.566 5.566 19 Si 0.783 3.217 20 H -0.191 1.191 21 H -0.200 1.200 22 H -0.205 1.205 23 H 0.074 0.926 24 H 0.095 0.905 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.136 0.864 29 H 0.103 0.897 30 H 0.119 0.881 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.166 0.834 35 H 0.165 0.835 36 H 0.143 0.857 37 H 0.122 0.878 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.031 0.969 41 H 0.019 0.981 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.258 6.535 18.252 19.849 hybrid contribution -1.492 -0.414 -1.217 1.969 sum -5.749 6.121 17.035 18.992 Atomic orbital electron populations 1.21723 0.93612 1.02312 1.02738 1.21563 0.97386 0.95098 1.01992 1.20347 0.83363 0.98874 1.05540 1.22531 0.97419 1.07893 0.85995 1.22102 0.88573 1.08410 0.98001 1.19832 1.02700 0.98108 0.85544 1.21546 0.99921 0.95191 0.88864 1.58595 1.41367 1.21009 1.17763 1.74956 1.22704 1.17865 1.01070 1.78272 1.03050 1.22266 1.06955 1.47585 1.04720 1.45397 1.09460 1.22401 1.03189 1.00285 0.74597 1.21793 1.00841 0.93318 0.98434 1.18882 0.95641 0.96078 0.89892 1.21582 1.45738 0.93525 0.97279 0.92870 1.25832 0.94902 1.01348 0.97051 1.70058 1.47057 1.32742 1.06793 0.85501 0.78021 0.79883 0.78291 1.19135 1.19992 1.20542 0.92629 0.90463 0.92769 0.93886 0.91176 0.86426 0.89672 0.88078 0.90461 0.92733 0.94454 0.83387 0.83496 0.85665 0.87772 0.93890 0.91656 0.96918 0.98144 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.91 71.98 0.71 -1.65 16 2 C -0.12 -2.43 5.92 30.59 0.18 -2.25 16 3 C -0.04 -0.78 5.19 29.85 0.15 -0.63 16 4 C 0.00 -0.13 6.25 41.35 0.26 0.13 16 5 C -0.03 -0.85 6.50 41.60 0.27 -0.58 16 6 C -0.02 -0.44 5.74 29.85 0.17 -0.27 16 7 C 0.08 1.29 6.77 86.30 0.58 1.87 16 8 N -0.86 -11.02 9.62 -186.72 -1.80 -12.82 16 9 N -0.30 -10.74 12.41 -48.60 -0.60 -11.34 16 10 N -0.13 -4.80 13.16 37.02 0.49 -4.32 16 11 N -0.28 -8.96 3.34 -334.40 -1.12 -10.08 16 12 C 0.12 3.61 6.19 86.38 0.53 4.14 16 13 C -0.11 -4.08 5.48 30.59 0.17 -3.91 16 14 C 0.03 1.59 4.97 29.85 0.15 1.74 16 15 C -0.54 -29.73 9.11 25.60 0.23 -29.49 16 16 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 17 C 0.01 0.40 5.46 84.66 0.46 0.86 16 18 N -0.93 -53.82 13.29 21.45 0.28 -53.53 16 19 Si 0.96 43.20 29.54 68.60 2.03 45.23 16 20 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 23 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.04 1.12 6.13 -2.39 -0.01 1.11 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 28 H 0.12 1.47 7.99 -2.39 -0.02 1.45 16 29 H 0.08 1.52 7.16 -2.39 -0.02 1.50 16 30 H 0.10 1.47 7.99 -2.38 -0.02 1.45 16 31 H 0.08 1.70 8.14 -2.39 -0.02 1.69 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.35 3.44 9.08 -89.70 -0.81 2.63 16 35 H 0.35 3.16 8.99 -89.69 -0.81 2.35 16 36 H 0.13 3.24 7.12 -2.39 -0.02 3.22 16 37 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 38 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 39 H 0.06 2.46 6.13 -2.38 -0.01 2.44 16 40 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 42 H 0.26 14.46 8.31 -92.70 -0.77 13.69 16 Total: -1.00 -67.75 346.36 2.55 -65.20 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -0.61 Total: 11.70 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: 3.88 Total: -30.04 kcal Atomic # 7 Polarization: -89.35 SS G_CDS: -2.74 Total: -92.09 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -67.75 2.55 -65.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958543811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.115 kcal (2) G-P(sol) polarization free energy of solvation -67.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds