Wall clock time and date at job start Mon Mar 30 2020 04:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47176 * 2 1 4 4 C 1.50698 * 109.47298 * 119.99953 * 2 1 3 5 5 C 1.35356 * 126.90738 * 305.39855 * 4 2 1 6 6 C 1.50696 * 126.75470 * 359.96480 * 5 4 2 7 7 C 1.52998 * 109.47208 * 96.61643 * 6 5 4 8 8 N 1.46902 * 109.46866 * 184.51239 * 7 6 5 9 9 N 1.33770 * 106.49288 * 180.22191 * 5 4 2 10 10 N 1.28635 * 108.88770 * 359.56569 * 9 5 4 11 11 N 1.28721 * 110.17588 * 0.44851 * 10 9 5 12 12 C 1.46500 * 125.86537 * 179.70093 * 11 10 9 13 13 C 1.53001 * 109.47151 * 270.01877 * 12 11 10 14 14 C 1.52994 * 109.46907 * 180.02562 * 13 12 11 15 15 C 1.50708 * 109.46902 * 180.02562 * 14 13 12 16 16 H 1.07994 * 119.99932 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99549 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99491 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00480 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47118 * 90.00133 * 19 17 15 21 21 H 1.48500 * 109.47090 * 210.00271 * 19 17 15 22 22 H 1.48501 * 109.46866 * 329.99907 * 19 17 15 23 23 H 1.08996 * 109.47278 * 307.21804 * 1 2 3 24 24 H 1.09004 * 109.46935 * 67.21324 * 1 2 3 25 25 H 1.08996 * 109.47346 * 187.21342 * 1 2 3 26 26 H 1.09000 * 109.47072 * 240.00394 * 2 1 3 27 27 H 1.09004 * 109.47185 * 176.32901 * 3 2 1 28 28 H 1.09006 * 109.47001 * 296.33111 * 3 2 1 29 29 H 1.08996 * 109.47278 * 56.33028 * 3 2 1 30 30 H 1.08993 * 109.47107 * 336.61293 * 6 5 4 31 31 H 1.09005 * 109.46878 * 216.61417 * 6 5 4 32 32 H 1.08995 * 109.47383 * 64.50595 * 7 6 5 33 33 H 1.09004 * 109.47107 * 304.50461 * 7 6 5 34 34 H 1.00908 * 110.99847 * 180.02562 * 8 7 6 35 35 H 1.00906 * 111.00047 * 303.94371 * 8 7 6 36 36 H 1.08994 * 109.47384 * 30.03115 * 12 11 10 37 37 H 1.09004 * 109.46559 * 150.02624 * 12 11 10 38 38 H 1.08989 * 109.47540 * 300.00776 * 13 12 11 39 39 H 1.09004 * 109.46779 * 60.00881 * 13 12 11 40 40 H 1.08997 * 109.47746 * 300.00423 * 14 13 12 41 41 H 1.09000 * 109.47276 * 60.00528 * 14 13 12 42 42 H 0.97000 * 119.99674 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.7122 -0.4340 2.5162 6 6 0.7817 0.6475 3.0014 7 6 -0.6073 0.0540 3.2446 8 7 -1.5405 1.1270 3.6133 9 7 2.3888 -1.3061 3.2719 10 7 3.0748 -2.0776 2.5045 11 7 2.8934 -1.7533 1.2721 12 6 3.5132 -2.4016 0.1137 13 6 4.8380 -1.7083 -0.2104 14 6 5.4849 -2.3849 -1.4205 15 6 6.7902 -1.7024 -1.7395 16 1 7.1249 -0.8697 -1.1389 17 6 7.5568 -2.1412 -2.7981 18 7 8.6962 -1.5459 -3.0761 19 14 6.9781 -3.5821 -3.8365 20 1 6.1534 -3.0796 -4.9645 21 1 8.1560 -4.3117 -4.3710 22 1 6.1651 -4.5005 -2.9994 23 1 -0.3633 0.6216 0.8183 24 1 -0.3633 0.3980 -0.9475 25 1 -0.3634 -1.0195 0.1290 26 1 1.8933 -0.5138 -0.8900 27 1 3.1280 1.4432 0.0658 28 1 1.7313 1.9370 -0.9211 29 1 1.6240 1.9750 0.8552 30 1 0.7145 1.4333 2.2491 31 1 1.1656 1.0668 3.9314 32 1 -0.5544 -0.6753 4.0529 33 1 -0.9575 -0.4356 2.3358 34 1 -2.4657 0.7602 3.7797 35 1 -1.2049 1.6382 4.4159 36 1 3.6984 -3.4514 0.3408 37 1 2.8451 -2.3279 -0.7444 38 1 4.6527 -0.6585 -0.4375 39 1 5.5061 -1.7819 0.6477 40 1 5.6702 -3.4349 -1.1939 41 1 4.8167 -2.3110 -2.2785 42 1 9.2354 -1.8544 -3.8211 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958544013.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:10 Heat of formation + Delta-G solvation = 65.096656 kcal Electronic energy + Delta-G solvation = -20607.176421 eV Core-core repulsion = 17623.306957 eV Total energy + Delta-G solvation = -2983.869464 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.18871 -36.79045 -36.10131 -34.89813 -33.30144 -31.67306 -30.70952 -28.28061 -27.60714 -27.25963 -24.01218 -23.29770 -22.34443 -20.86759 -20.44615 -19.94118 -17.27147 -16.69156 -16.06964 -15.92973 -15.54807 -14.78748 -14.62918 -14.38409 -14.18421 -14.08965 -13.26677 -13.02665 -12.85826 -12.53944 -12.35554 -12.20669 -12.09576 -12.01380 -11.53524 -11.42519 -11.26905 -11.22791 -11.04337 -10.92177 -10.37259 -10.31032 -10.14615 -9.94133 -9.53431 -9.33522 -9.02005 -8.78388 -8.64879 -6.14331 -4.14369 1.77232 2.57049 2.64490 3.22049 3.30685 3.31724 4.18875 4.34543 4.34776 4.62597 4.71472 4.74763 4.96630 5.04298 5.07696 5.18935 5.20477 5.26161 5.30007 5.42263 5.49036 5.53995 5.61383 5.74708 5.80803 5.83094 5.93041 5.98563 6.14722 6.16167 6.18856 6.30399 6.39758 6.56366 6.80073 6.82892 7.03937 7.11985 7.16867 7.63754 8.41006 8.72794 8.89436 9.46188 10.98926 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.032470 B = 0.004015 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.135635 B = 6972.663946 C = 7216.130478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.023 4.023 3 C -0.146 4.146 4 C -0.003 4.003 5 C -0.026 4.026 6 C -0.032 4.032 7 C 0.063 3.937 8 N -0.851 5.851 9 N -0.276 5.276 10 N -0.087 5.087 11 N -0.276 5.276 12 C 0.104 3.896 13 C -0.114 4.114 14 C -0.008 4.008 15 C -0.524 4.524 16 H 0.072 0.928 17 C 0.068 3.932 18 N -0.900 5.900 19 Si 0.880 3.120 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.265 1.265 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.030 0.970 33 H 0.076 0.924 34 H 0.342 0.658 35 H 0.340 0.660 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.021 0.979 41 H 0.015 0.985 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.544 3.809 7.617 22.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.044 4.044 3 C -0.203 4.203 4 C -0.136 4.136 5 C -0.165 4.165 6 C -0.071 4.071 7 C -0.069 4.069 8 N -0.380 5.380 9 N -0.142 5.142 10 N -0.065 5.065 11 N -0.068 5.068 12 C -0.016 4.016 13 C -0.153 4.153 14 C -0.046 4.046 15 C -0.562 4.562 16 H 0.090 0.910 17 C -0.134 4.134 18 N -0.538 5.538 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.190 1.190 23 H 0.094 0.906 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.102 0.898 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.048 0.952 33 H 0.094 0.906 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.039 0.961 41 H 0.034 0.966 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.456 3.074 7.749 21.167 hybrid contribution -0.503 -0.781 -0.570 1.090 sum -19.959 2.293 7.179 21.334 Atomic orbital electron populations 1.22040 0.93308 1.02303 1.03121 1.19659 0.96271 0.95958 0.92483 1.21892 1.01895 0.94070 1.02492 1.21933 0.98723 0.94683 0.98260 1.21429 1.03989 1.01674 0.89448 1.19899 0.91086 0.93950 1.02179 1.21850 0.91869 0.92557 1.00580 1.58745 1.05683 1.28623 1.44981 1.74981 1.08058 1.04758 1.26384 1.78293 1.20145 1.21216 0.86868 1.47527 1.29219 1.22069 1.08029 1.22567 0.96919 0.98707 0.83375 1.21889 0.92257 0.99888 1.01283 1.19512 0.96587 0.96437 0.92061 1.21016 1.03014 1.17402 1.14789 0.90967 1.25025 0.94657 0.96577 0.97093 1.69910 1.12919 1.41408 1.29552 0.86776 0.78537 0.83160 0.80794 1.20188 1.21227 1.18987 0.90626 0.91694 0.92808 0.89753 0.92028 0.91463 0.91807 0.88989 0.90625 0.95152 0.90568 0.84615 0.84754 0.87791 0.88288 0.91758 0.91340 0.96082 0.96642 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.07 37.16 0.30 -1.05 16 2 C -0.02 -0.26 3.02 -91.77 -0.28 -0.53 16 3 C -0.15 -1.53 9.05 37.16 0.34 -1.20 16 4 C 0.00 -0.04 5.70 -82.09 -0.47 -0.51 16 5 C -0.03 -0.37 6.33 -82.78 -0.52 -0.89 16 6 C -0.03 -0.34 5.08 -27.89 -0.14 -0.48 16 7 C 0.06 0.58 6.22 -3.82 -0.02 0.56 16 8 N -0.85 -6.20 9.62 -10.37 -0.10 -6.30 16 9 N -0.28 -4.77 12.41 33.29 0.41 -4.36 16 10 N -0.09 -1.57 13.17 60.35 0.79 -0.78 16 11 N -0.28 -4.39 3.34 -57.05 -0.19 -4.58 16 12 C 0.10 1.57 6.09 -4.04 -0.02 1.54 16 13 C -0.11 -2.13 5.48 -26.73 -0.15 -2.27 16 14 C -0.01 -0.17 4.04 -27.88 -0.11 -0.29 16 15 C -0.52 -14.45 9.66 -34.44 -0.33 -14.78 16 16 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 17 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 18 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 19 Si 0.88 20.84 27.47 -169.99 -4.67 16.17 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 23 H 0.07 0.66 4.58 -51.93 -0.24 0.43 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.50 8.12 -51.93 -0.42 0.08 16 26 H 0.08 0.94 6.80 -51.93 -0.35 0.59 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.61 5.79 -51.93 -0.30 0.31 16 30 H 0.09 0.90 4.48 -51.93 -0.23 0.66 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.73 6.37 -51.93 -0.33 0.39 16 34 H 0.34 1.96 9.08 -39.29 -0.36 1.61 16 35 H 0.34 2.11 8.99 -39.29 -0.35 1.76 16 36 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.10 1.24 7.04 -51.93 -0.37 0.88 16 38 H 0.06 1.20 8.14 -51.94 -0.42 0.78 16 39 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 41 H 0.02 0.32 7.57 -51.93 -0.39 -0.07 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 332.38 15.07 5.01 5.01 Total: -1.00 -31.89 332.38 -6.17 -38.06 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -6.69 Total: 1.32 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -1.51 Total: -18.07 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 1.69 Total: -42.48 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.89 -6.17 -38.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544013.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.152 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds